RNA–Protein interactions for RNA: ENST00000569063.5

CLK3-225, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 833 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-225ENST00000569063 FBXO33Q7Z6M2 555 aa25.36■■□□□ 1.65
CLK3-225ENST00000569063 CAPNS2Q96L46 248 aa25.36■■□□□ 1.65
CLK3-225ENST00000569063 FBXO3Q9UK99 471 aa25.36■■□□□ 1.65
CLK3-225ENST00000569063 FAM205AQ6ZU69 1335 aa25.36■■□□□ 1.65
CLK3-225ENST00000569063 PUM3Q15397 648 aaKnown RBP25.34■■□□□ 1.65
CLK3-225ENST00000569063 ZKSCAN2Q63HK3 967 aa25.34■■□□□ 1.65
CLK3-225ENST00000569063 CYP4F22Q6NT55 531 aa25.34■■□□□ 1.65
CLK3-225ENST00000569063 ATG9AQ7Z3C6 839 aa25.34■■□□□ 1.65
CLK3-225ENST00000569063 ZBED3Q96IU2 234 aaPredicted RBP25.34■■□□□ 1.65
CLK3-225ENST00000569063 TNNQ9UQP3 1299 aa25.34■■□□□ 1.65
CLK3-225ENST00000569063 CIAO1O76071 339 aa25.33■■□□□ 1.65
CLK3-225ENST00000569063 FGFR2P21802 821 aa25.33■■□□□ 1.65
CLK3-225ENST00000569063 CAVIN4Q5BKX8 364 aa25.33■■□□□ 1.65
CLK3-225ENST00000569063 PAXIP1Q6ZW49 1069 aaPredicted RBP25.33■■□□□ 1.65
CLK3-225ENST00000569063 CDCA5Q96FF9 252 aa25.33■■□□□ 1.65
CLK3-225ENST00000569063 VPS37DQ86XT2 251 aa25.32■■□□□ 1.64
CLK3-225ENST00000569063 C2orf69Q8N8R5 385 aa25.32■■□□□ 1.64
CLK3-225ENST00000569063 MTMR14Q8NCE2 650 aa25.32■■□□□ 1.64
CLK3-225ENST00000569063 CLUAP1Q96AJ1 413 aa25.32■■□□□ 1.64
CLK3-225ENST00000569063 GBA2Q9HCG7 927 aaPredicted RBP25.32■■□□□ 1.64
CLK3-225ENST00000569063 JAG2Q9Y219 1238 aa25.32■■□□□ 1.64
CLK3-225ENST00000569063 IFIT1P09914 478 aaKnown RBP25.31■■□□□ 1.64
CLK3-225ENST00000569063 COPRSQ9NQ92 184 aa25.31■■□□□ 1.64
CLK3-225ENST00000569063 WBP1LQ9NX94 342 aa25.31■■□□□ 1.64
CLK3-225ENST00000569063 HUNKP57058 714 aa25.3■■□□□ 1.64
CLK3-225ENST00000569063 MTX1Q13505 466 aa25.3■■□□□ 1.64
CLK3-225ENST00000569063 DLGAP5Q15398 846 aa25.3■■□□□ 1.64
CLK3-225ENST00000569063 MFSD14BQ5SR56 506 aa25.3■■□□□ 1.64
CLK3-225ENST00000569063 THSD7BQ9C0I4 1608 aa25.3■■□□□ 1.64
CLK3-225ENST00000569063 F8W031 263 aaPredicted RBP25.29■■□□□ 1.64
CLK3-225ENST00000569063 MAP2K2P36507 400 aa25.29■■□□□ 1.64
CLK3-225ENST00000569063 MAP2K1Q02750 393 aaPredicted RBP25.29■■□□□ 1.64
CLK3-225ENST00000569063 LPIN2Q92539 896 aa25.29■■□□□ 1.64
CLK3-225ENST00000569063 SIL1Q9H173 461 aa25.29■■□□□ 1.64
CLK3-225ENST00000569063 SCAF8Q9UPN6 1271 aaKnown RBP25.29■■□□□ 1.64
CLK3-225ENST00000569063 IL15P40933 162 aaPredicted RBP25.28■■□□□ 1.64
CLK3-225ENST00000569063 BCAMP50895 628 aa25.28■■□□□ 1.64
CLK3-225ENST00000569063 GRM1Q13255 1194 aa25.28■■□□□ 1.64
CLK3-225ENST00000569063 TMEM57Q8N5G2 664 aa25.28■■□□□ 1.64
CLK3-225ENST00000569063 SLC5A1P13866 664 aa25.27■■□□□ 1.64
CLK3-225ENST00000569063 APOBEC3FQ8IUX4 373 aaKnown RBP25.27■■□□□ 1.64
CLK3-225ENST00000569063 CEP126Q9P2H0 1117 aa25.27■■□□□ 1.64
CLK3-225ENST00000569063 PA2G4Q9UQ80 394 aaKnown RBP25.27■■□□□ 1.64
CLK3-225ENST00000569063 FOXN1O15353 648 aa25.26■■□□□ 1.63
CLK3-225ENST00000569063 SRGAP3O43295 1099 aa25.26■■□□□ 1.63
CLK3-225ENST00000569063 GNAI2P04899 355 aa25.26■■□□□ 1.63
CLK3-225ENST00000569063 FKBP1BP68106 108 aa25.26■■□□□ 1.63
CLK3-225ENST00000569063 CFAP100Q494V2 611 aa25.26■■□□□ 1.63
CLK3-225ENST00000569063 AIDAQ96BJ3 306 aa25.26■■□□□ 1.63
CLK3-225ENST00000569063 IQSEC3Q9UPP2 1182 aaPredicted RBP25.26■■□□□ 1.63
CLK3-225ENST00000569063 SPDYE2BA6NHP3 402 aa25.25■■□□□ 1.63
CLK3-225ENST00000569063 AOC2O75106 756 aa25.25■■□□□ 1.63
CLK3-225ENST00000569063 FRAT2O75474 233 aaPredicted RBP25.25■■□□□ 1.63
CLK3-225ENST00000569063 SPDYE6P0CI01 402 aa25.25■■□□□ 1.63
CLK3-225ENST00000569063 RGMBQ6NW40 437 aa25.25■■□□□ 1.63
CLK3-225ENST00000569063 TBC1D22AQ8WUA7 517 aa25.25■■□□□ 1.63
CLK3-225ENST00000569063 PCDHAC2Q9Y5I4 1007 aa25.25■■□□□ 1.63
CLK3-225ENST00000569063 COL13A1Q5TAT6 717 aaPredicted RBP25.24■■□□□ 1.63
CLK3-225ENST00000569063 PRMT6Q96LA8 375 aaPredicted RBP25.24■■□□□ 1.63
CLK3-225ENST00000569063 SERPINA10Q9UK55 444 aa25.24■■□□□ 1.63
CLK3-225ENST00000569063 TTF2Q9UNY4 1162 aaKnown RBP25.24■■□□□ 1.63
CLK3-225ENST00000569063 MYO1BO43795 1136 aa25.23■■□□□ 1.63
CLK3-225ENST00000569063 CHAF1AQ13111 956 aaPredicted RBP25.23■■□□□ 1.63
CLK3-225ENST00000569063 ATP2B3Q16720 1220 aa25.23■■□□□ 1.63
CLK3-225ENST00000569063 PRAMEF18Q5VWM3 479 aa25.23■■□□□ 1.63
CLK3-225ENST00000569063 FTSJ3Q8IY81 847 aaKnown RBP25.23■■□□□ 1.63
CLK3-225ENST00000569063 DZIP1LQ8IYY4 767 aaKnown RBP25.23■■□□□ 1.63
CLK3-225ENST00000569063 ARAP2Q8WZ64 1704 aa25.23■■□□□ 1.63
CLK3-225ENST00000569063 CTCFP49711 727 aaPredicted RBP25.22■■□□□ 1.63
CLK3-225ENST00000569063 NOGQ13253 232 aa25.22■■□□□ 1.63
CLK3-225ENST00000569063 CCDC102AQ96A19 550 aa25.22■■□□□ 1.63
CLK3-225ENST00000569063 COL1A1P02452 1464 aaPredicted RBP25.21■■□□□ 1.63
CLK3-225ENST00000569063 PAPPA2Q9BXP8 1791 aa25.21■■□□□ 1.63
CLK3-225ENST00000569063 FAM155AB1AL88 458 aaPredicted RBP25.21■■□□□ 1.63
CLK3-225ENST00000569063 RBM5P52756 815 aaKnown RBP eCLIP25.21■■□□□ 1.63
CLK3-225ENST00000569063 RLBP1P12271 317 aa25.2■■□□□ 1.62
CLK3-225ENST00000569063 NF2P35240 595 aa25.2■■□□□ 1.62
CLK3-225ENST00000569063 ZNF157P51786 506 aaPredicted RBP25.2■■□□□ 1.62
CLK3-225ENST00000569063 HDLBPQ00341 1268 aaKnown RBP25.2■■□□□ 1.62
CLK3-225ENST00000569063 GRIK5Q16478 980 aa25.2■■□□□ 1.62
CLK3-225ENST00000569063 DEFB129Q9H1M3 183 aa25.2■■□□□ 1.62
CLK3-225ENST00000569063 SUGT1Q9Y2Z0 365 aa25.2■■□□□ 1.62
CLK3-225ENST00000569063 ECM29Q5VYK3 1845 aa25.19■■□□□ 1.62
CLK3-225ENST00000569063 BEGAINQ9BUH8 593 aa25.19■■□□□ 1.62
CLK3-225ENST00000569063 PPP2R3BQ9Y5P8 575 aa25.19■■□□□ 1.62
CLK3-225ENST00000569063 AOX1Q06278 1338 aa25.18■■□□□ 1.62
CLK3-225ENST00000569063 PNMA6EA0A0J9YXQ4 647 aa25.18■■□□□ 1.62
CLK3-225ENST00000569063 CLRN2A0PK11 232 aa25.18■■□□□ 1.62
CLK3-225ENST00000569063 ZBTB22O15209 634 aa25.18■■□□□ 1.62
CLK3-225ENST00000569063 CRKP46108 304 aa25.18■■□□□ 1.62
CLK3-225ENST00000569063 MRIQ9BWK5 157 aa25.18■■□□□ 1.62
CLK3-225ENST00000569063 PRDM10Q9NQV6 1147 aa25.18■■□□□ 1.62
CLK3-225ENST00000569063 ZBTB7BO15156 539 aaPredicted RBP25.17■■□□□ 1.62
CLK3-225ENST00000569063 SLC10A3P09131 477 aa25.17■■□□□ 1.62
CLK3-225ENST00000569063 IFFO2Q5TF58 517 aa25.17■■□□□ 1.62
CLK3-225ENST00000569063 MOB2Q70IA6 237 aa25.17■■□□□ 1.62
CLK3-225ENST00000569063 ITPRIPQ8IWB1 547 aa25.17■■□□□ 1.62
CLK3-225ENST00000569063 WDR66Q8TBY9 1149 aa25.17■■□□□ 1.62
CLK3-225ENST00000569063 GNL3LQ9NVN8 582 aaKnown RBP25.17■■□□□ 1.62
CLK3-225ENST00000569063 SPDYE2Q495Y8 402 aa25.16■■□□□ 1.62
Retrieved 100 of 20,778 RNA–protein pairs in 147.3 ms