RNA–Protein interactions for RNA: ENST00000568452.6

CLN3-233, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,616 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-233ENST00000568452 WTIPA6NIX2 430 aaPredicted RBP22.77■■□□□ 1.24
CLN3-233ENST00000568452 K7ELQ4 463 aaPredicted RBP22.77■■□□□ 1.24
CLN3-233ENST00000568452 CREB3L3Q68CJ9 461 aa22.77■■□□□ 1.24
CLN3-233ENST00000568452 GGA1Q9UJY5 639 aa22.77■■□□□ 1.24
CLN3-233ENST00000568452 IRS2Q9Y4H2 1338 aa22.76■■□□□ 1.23
CLN3-233ENST00000568452 FRAT2O75474 233 aaPredicted RBP22.76■■□□□ 1.23
CLN3-233ENST00000568452 PDE6AP16499 860 aa22.76■■□□□ 1.23
CLN3-233ENST00000568452 GPSM2P81274 684 aa22.76■■□□□ 1.23
CLN3-233ENST00000568452 NSFL1CQ9UNZ2 370 aaKnown RBP22.76■■□□□ 1.23
CLN3-233ENST00000568452 DOCK2Q92608 1830 aa22.76■■□□□ 1.23
CLN3-233ENST00000568452 M0R2C6 588 aa22.75■■□□□ 1.23
CLN3-233ENST00000568452 SLC27A2O14975 620 aa22.75■■□□□ 1.23
CLN3-233ENST00000568452 MCM2P49736 904 aa22.75■■□□□ 1.23
CLN3-233ENST00000568452 NEK4P51957 841 aa22.75■■□□□ 1.23
CLN3-233ENST00000568452 SLFNL1Q499Z3 407 aa22.75■■□□□ 1.23
CLN3-233ENST00000568452 TM6SF1Q9BZW5 370 aa22.75■■□□□ 1.23
CLN3-233ENST00000568452 PDGFDQ9GZP0 370 aaPredicted RBP22.75■■□□□ 1.23
CLN3-233ENST00000568452 TMX4Q9H1E5 349 aaPredicted RBP22.75■■□□□ 1.23
CLN3-233ENST00000568452 ATP6V0A2Q9Y487 856 aa22.75■■□□□ 1.23
CLN3-233ENST00000568452 LRRC37AA6NMS7 1700 aa22.75■■□□□ 1.23
CLN3-233ENST00000568452 H0YIN7 160 aa22.75■■□□□ 1.23
CLN3-233ENST00000568452 UFL1O94874 794 aa22.75■■□□□ 1.23
CLN3-233ENST00000568452 KLRK1P26718 216 aa22.75■■□□□ 1.23
CLN3-233ENST00000568452 ZNF804AQ7Z570 1209 aa22.75■■□□□ 1.23
CLN3-233ENST00000568452 RASEFQ8IZ41 740 aa22.75■■□□□ 1.23
CLN3-233ENST00000568452 LRP2BPQ9P2M1 347 aa22.75■■□□□ 1.23
CLN3-233ENST00000568452 IQSEC3Q9UPP2 1182 aaPredicted RBP22.75■■□□□ 1.23
CLN3-233ENST00000568452 ZNF532Q9HCE3 1301 aa22.74■■□□□ 1.23
CLN3-233ENST00000568452 STYK1Q6J9G0 422 aa22.74■■□□□ 1.23
CLN3-233ENST00000568452 C2CD5Q86YS7 1000 aa22.74■■□□□ 1.23
CLN3-233ENST00000568452 WWC3Q9ULE0 1092 aa22.74■■□□□ 1.23
CLN3-233ENST00000568452 CD2BP2O95400 341 aaKnown RBP22.73■■□□□ 1.23
CLN3-233ENST00000568452 HSPD1P10809 573 aaKnown RBP22.73■■□□□ 1.23
CLN3-233ENST00000568452 PSMA5P28066 241 aa22.73■■□□□ 1.23
CLN3-233ENST00000568452 KRT32Q14532 448 aa22.73■■□□□ 1.23
CLN3-233ENST00000568452 TSGA10IPQ3SY00 556 aa22.73■■□□□ 1.23
CLN3-233ENST00000568452 PUS7LQ9H0K6 701 aaKnown RBP22.73■■□□□ 1.23
CLN3-233ENST00000568452 TCRBV5S4A2TA0A5A2 114 aa22.72■■□□□ 1.23
CLN3-233ENST00000568452 PSDA5PKW4 1024 aaPredicted RBP22.72■■□□□ 1.23
CLN3-233ENST00000568452 IGSF3O75054 1194 aa22.72■■□□□ 1.23
CLN3-233ENST00000568452 MAGEB6Q8N7X4 407 aa22.72■■□□□ 1.23
CLN3-233ENST00000568452 COL11A2P13942 1736 aaPredicted RBP22.72■■□□□ 1.23
CLN3-233ENST00000568452 GPAA1O43292 621 aa22.71■■□□□ 1.23
CLN3-233ENST00000568452 TMED8Q6PL24 325 aaPredicted RBP22.71■■□□□ 1.23
CLN3-233ENST00000568452 CTNNA3Q9UI47 895 aa22.71■■□□□ 1.23
CLN3-233ENST00000568452 COL1A1P02452 1464 aaPredicted RBP22.71■■□□□ 1.23
CLN3-233ENST00000568452 TXNRD3Q86VQ6 643 aa22.71■■□□□ 1.23
CLN3-233ENST00000568452 ZNF622Q969S3 477 aaKnown RBP eCLIP22.71■■□□□ 1.23
CLN3-233ENST00000568452 ABCF2Q9UG63 623 aa22.71■■□□□ 1.23
CLN3-233ENST00000568452 ZGPATQ8N5A5 531 aaKnown RBP22.7■■□□□ 1.22
CLN3-233ENST00000568452 TBC1D16Q8TBP0 767 aa22.7■■□□□ 1.22
CLN3-233ENST00000568452 CNKSR1Q969H4 720 aa22.7■■□□□ 1.22
CLN3-233ENST00000568452 JAKMIP1Q96N16 626 aaKnown RBP22.7■■□□□ 1.22
CLN3-233ENST00000568452 RAI14Q9P0K7 980 aa22.7■■□□□ 1.22
CLN3-233ENST00000568452 MYO5AQ9Y4I1 1855 aaKnown RBP22.7■■□□□ 1.22
CLN3-233ENST00000568452 VPS53Q5VIR6 699 aa22.69■■□□□ 1.22
CLN3-233ENST00000568452 TDRD7Q8NHU6 1098 aaKnown RBP22.69■■□□□ 1.22
CLN3-233ENST00000568452 AIDAQ96BJ3 306 aa22.69■■□□□ 1.22
CLN3-233ENST00000568452 UPF3BQ9BZI7 483 aaKnown RBP22.69■■□□□ 1.22
CLN3-233ENST00000568452 ZSWIM6Q9HCJ5 1215 aa22.69■■□□□ 1.22
CLN3-233ENST00000568452 CYP46A1Q9Y6A2 500 aa22.69■■□□□ 1.22
CLN3-233ENST00000568452 MYH13Q9UKX3 1938 aa22.69■■□□□ 1.22
CLN3-233ENST00000568452 C6orf229H3BNL8 230 aa22.68■■□□□ 1.22
CLN3-233ENST00000568452 CASTP20810 708 aaKnown RBP22.68■■□□□ 1.22
CLN3-233ENST00000568452 SPTY2D1Q68D10 685 aaPredicted RBP22.68■■□□□ 1.22
CLN3-233ENST00000568452 WDR66Q8TBY9 1149 aa22.68■■□□□ 1.22
CLN3-233ENST00000568452 RPAP1Q9BWH6 1393 aaPredicted RBP22.68■■□□□ 1.22
CLN3-233ENST00000568452 HSP90AA1P07900 732 aaKnown RBP22.68■■□□□ 1.22
CLN3-233ENST00000568452 LTBP1Q14766 1721 aa22.68■■□□□ 1.22
CLN3-233ENST00000568452 SLC51AQ86UW1 340 aa22.68■■□□□ 1.22
CLN3-233ENST00000568452 MPNDQ8N594 471 aa22.68■■□□□ 1.22
CLN3-233ENST00000568452 POLLQ9UGP5 575 aa22.68■■□□□ 1.22
CLN3-233ENST00000568452 C10orf71Q711Q0 1435 aa22.67■■□□□ 1.22
CLN3-233ENST00000568452 CHAF1AQ13111 956 aaPredicted RBP22.67■■□□□ 1.22
CLN3-233ENST00000568452 SALL1Q9NSC2 1324 aa22.67■■□□□ 1.22
CLN3-233ENST00000568452 ZBTB7AO95365 584 aa22.66■■□□□ 1.22
CLN3-233ENST00000568452 CYP21A2P08686 494 aa22.66■■□□□ 1.22
CLN3-233ENST00000568452 GNAT2P19087 354 aa22.66■■□□□ 1.22
CLN3-233ENST00000568452 CYP7A1P22680 504 aa22.66■■□□□ 1.22
CLN3-233ENST00000568452 ADCK5Q3MIX3 580 aa22.66■■□□□ 1.22
CLN3-233ENST00000568452 RUFY3Q7L099 469 aa22.66■■□□□ 1.22
CLN3-233ENST00000568452 IL1R1P14778 569 aa22.65■■□□□ 1.22
CLN3-233ENST00000568452 BLOC1S2Q6QNY1 142 aa22.65■■□□□ 1.22
CLN3-233ENST00000568452 DPP8Q6V1X1 898 aaPredicted RBP22.65■■□□□ 1.22
CLN3-233ENST00000568452 TTC14Q96N46 770 aa22.65■■□□□ 1.22
CLN3-233ENST00000568452 STRBPQ96SI9 672 aaKnown RBP22.65■■□□□ 1.22
CLN3-233ENST00000568452 CD209Q9NNX6 404 aa22.65■■□□□ 1.22
CLN3-233ENST00000568452 MBD4O95243 580 aa22.64■■□□□ 1.22
CLN3-233ENST00000568452 IMMTQ16891 758 aaKnown RBP22.64■■□□□ 1.22
CLN3-233ENST00000568452 NAA16Q6N069 864 aaPredicted RBP22.64■■□□□ 1.22
CLN3-233ENST00000568452 GPR101Q96P66 508 aaPredicted RBP22.64■■□□□ 1.22
CLN3-233ENST00000568452 MTFR1LQ9H019 292 aa22.64■■□□□ 1.22
CLN3-233ENST00000568452 DUOX1Q9NRD9 1551 aa22.64■■□□□ 1.22
CLN3-233ENST00000568452 SPRYD3Q8NCJ5 442 aa22.64■■□□□ 1.21
CLN3-233ENST00000568452 NEK1Q96PY6 1258 aa22.64■■□□□ 1.21
CLN3-233ENST00000568452 SLKQ9H2G2 1235 aaPredicted RBP22.64■■□□□ 1.21
CLN3-233ENST00000568452 PDRG1Q9NUG6 133 aa22.64■■□□□ 1.21
CLN3-233ENST00000568452 FOXP2O15409 715 aa22.63■■□□□ 1.21
CLN3-233ENST00000568452 FGAP02671 866 aa22.63■■□□□ 1.21
CLN3-233ENST00000568452 HMGB1P09429 215 aaKnown RBP22.63■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms