RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 ATG9AQ7Z3C6 839 aa18.78■□□□□ 0.6
VPS39-210ENST00000568357 PDE4DIPQ5VU43 2346 aa18.78■□□□□ 0.6
VPS39-210ENST00000568357 ASTN2O75129 1339 aaPredicted RBP18.77■□□□□ 0.6
VPS39-210ENST00000568357 RLBP1P12271 317 aa18.77■□□□□ 0.6
VPS39-210ENST00000568357 CDC37L1Q7L3B6 337 aa18.77■□□□□ 0.6
VPS39-210ENST00000568357 USP48Q86UV5 1035 aa18.77■□□□□ 0.6
VPS39-210ENST00000568357 MYOZ2Q9NPC6 264 aa18.77■□□□□ 0.6
VPS39-210ENST00000568357 PA2G4Q9UQ80 394 aaKnown RBP18.77■□□□□ 0.6
VPS39-210ENST00000568357 TLL2Q9Y6L7 1015 aa18.77■□□□□ 0.6
VPS39-210ENST00000568357 HIBADHP31937 336 aaKnown RBP18.76■□□□□ 0.59
VPS39-210ENST00000568357 DGKZQ13574 1117 aa18.76■□□□□ 0.59
VPS39-210ENST00000568357 SCARF1Q14162 830 aa18.76■□□□□ 0.59
VPS39-210ENST00000568357 FBXO33Q7Z6M2 555 aa18.76■□□□□ 0.59
VPS39-210ENST00000568357 DZIP1LQ8IYY4 767 aaKnown RBP18.76■□□□□ 0.59
VPS39-210ENST00000568357 CERS5Q8N5B7 392 aa18.76■□□□□ 0.59
VPS39-210ENST00000568357 TDRD7Q8NHU6 1098 aaKnown RBP18.76■□□□□ 0.59
VPS39-210ENST00000568357 SIL1Q9H173 461 aa18.76■□□□□ 0.59
VPS39-210ENST00000568357 JAG2Q9Y219 1238 aa18.76■□□□□ 0.59
VPS39-210ENST00000568357 MYO3BQ8WXR4 1341 aa18.75■□□□□ 0.59
VPS39-210ENST00000568357 SASH1O94885 1247 aa18.75■□□□□ 0.59
VPS39-210ENST00000568357 GNAI2P04899 355 aa18.75■□□□□ 0.59
VPS39-210ENST00000568357 FGFR2P21802 821 aa18.75■□□□□ 0.59
VPS39-210ENST00000568357 KIAA0825Q8IV33 1275 aa18.75■□□□□ 0.59
VPS39-210ENST00000568357 COPRSQ9NQ92 184 aa18.75■□□□□ 0.59
VPS39-210ENST00000568357 CIAO1O76071 339 aa18.74■□□□□ 0.59
VPS39-210ENST00000568357 MAP2K2P36507 400 aa18.74■□□□□ 0.59
VPS39-210ENST00000568357 MTX1Q13505 466 aa18.74■□□□□ 0.59
VPS39-210ENST00000568357 FTSJ3Q8IY81 847 aaKnown RBP18.74■□□□□ 0.59
VPS39-210ENST00000568357 OGFOD1Q8N543 542 aa18.74■□□□□ 0.59
VPS39-210ENST00000568357 DCPSQ96C86 337 aaKnown RBP18.74■□□□□ 0.59
VPS39-210ENST00000568357 FBXO3Q9UK99 471 aa18.74■□□□□ 0.59
VPS39-210ENST00000568357 A0A1B0GUL6 1792 aa18.73■□□□□ 0.59
VPS39-210ENST00000568357 SRGAP3O43295 1099 aa18.73■□□□□ 0.59
VPS39-210ENST00000568357 BCAMP50895 628 aa18.73■□□□□ 0.59
VPS39-210ENST00000568357 PUM3Q15397 648 aaKnown RBP18.73■□□□□ 0.59
VPS39-210ENST00000568357 NBPF9Q3BBW0 867 aa18.73■□□□□ 0.59
VPS39-210ENST00000568357 KRT26Q7Z3Y9 468 aa18.73■□□□□ 0.59
VPS39-210ENST00000568357 ADM5C9JUS6 153 aa18.72■□□□□ 0.59
VPS39-210ENST00000568357 ZBTB7BO15156 539 aaPredicted RBP18.72■□□□□ 0.59
VPS39-210ENST00000568357 CELF2O95319 508 aaKnown RBP18.72■□□□□ 0.59
VPS39-210ENST00000568357 ANGEL2Q5VTE6 544 aaKnown RBP18.72■□□□□ 0.59
VPS39-210ENST00000568357 PANK1Q8TE04 598 aa18.72■□□□□ 0.59
VPS39-210ENST00000568357 GGA3Q9NZ52 723 aa18.72■□□□□ 0.59
VPS39-210ENST00000568357 IQSEC3Q9UPP2 1182 aaPredicted RBP18.72■□□□□ 0.59
VPS39-210ENST00000568357 FAM205AQ6ZU69 1335 aa18.72■□□□□ 0.59
VPS39-210ENST00000568357 PNMA6EA0A0J9YXQ4 647 aa18.71■□□□□ 0.59
VPS39-210ENST00000568357 F8W031 263 aaPredicted RBP18.71■□□□□ 0.59
VPS39-210ENST00000568357 WNT10BO00744 389 aa18.71■□□□□ 0.59
VPS39-210ENST00000568357 IFIT1P09914 478 aaKnown RBP18.71■□□□□ 0.59
VPS39-210ENST00000568357 IL15P40933 162 aaPredicted RBP18.71■□□□□ 0.59
VPS39-210ENST00000568357 FKBP1AP62942 108 aaKnown RBP18.71■□□□□ 0.59
VPS39-210ENST00000568357 CAVIN4Q5BKX8 364 aa18.71■□□□□ 0.59
VPS39-210ENST00000568357 VPS37DQ86XT2 251 aa18.71■□□□□ 0.59
VPS39-210ENST00000568357 ITPRIPQ8IWB1 547 aa18.71■□□□□ 0.59
VPS39-210ENST00000568357 LPIN2Q92539 896 aa18.71■□□□□ 0.59
VPS39-210ENST00000568357 CEP126Q9P2H0 1117 aa18.71■□□□□ 0.59
VPS39-210ENST00000568357 PSME4Q14997 1843 aa18.71■□□□□ 0.59
VPS39-210ENST00000568357 CA12O43570 354 aa18.7■□□□□ 0.58
VPS39-210ENST00000568357 MMP14P50281 582 aa18.7■□□□□ 0.58
VPS39-210ENST00000568357 SOX10P56693 466 aa18.7■□□□□ 0.58
VPS39-210ENST00000568357 SAPCD2Q86UD0 394 aa18.7■□□□□ 0.58
VPS39-210ENST00000568357 ZBED3Q96IU2 234 aaPredicted RBP18.7■□□□□ 0.58
VPS39-210ENST00000568357 ZNF408Q9H9D4 720 aa18.7■□□□□ 0.58
VPS39-210ENST00000568357 RCAN3Q9UKA8 241 aa18.7■□□□□ 0.58
VPS39-210ENST00000568357 HDAC9Q9UKV0 1011 aa18.7■□□□□ 0.58
VPS39-210ENST00000568357 SCAF8Q9UPN6 1271 aaKnown RBP18.7■□□□□ 0.58
VPS39-210ENST00000568357 ZNF646O15015 1829 aaPredicted RBP18.7■□□□□ 0.58
VPS39-210ENST00000568357 SLC5A1P13866 664 aa18.69■□□□□ 0.58
VPS39-210ENST00000568357 SULF1Q8IWU6 871 aa18.69■□□□□ 0.58
VPS39-210ENST00000568357 C1orf115Q9H7X2 142 aa18.69■□□□□ 0.58
VPS39-210ENST00000568357 PCDHAC2Q9Y5I4 1007 aa18.69■□□□□ 0.58
VPS39-210ENST00000568357 MFSD14BQ5SR56 506 aa18.68■□□□□ 0.58
VPS39-210ENST00000568357 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP18.68■□□□□ 0.58
VPS39-210ENST00000568357 ATP8B2P98198 1209 aa18.67■□□□□ 0.58
VPS39-210ENST00000568357 CHAF1AQ13111 956 aaPredicted RBP18.67■□□□□ 0.58
VPS39-210ENST00000568357 GRIK5Q16478 980 aa18.67■□□□□ 0.58
VPS39-210ENST00000568357 ATP2B3Q16720 1220 aa18.67■□□□□ 0.58
VPS39-210ENST00000568357 FRAT2O75474 233 aaPredicted RBP18.66■□□□□ 0.58
VPS39-210ENST00000568357 TIMM10P62072 90 aa18.66■□□□□ 0.58
VPS39-210ENST00000568357 TFCP2Q12800 502 aa18.66■□□□□ 0.58
VPS39-210ENST00000568357 POLA2Q14181 598 aa18.66■□□□□ 0.58
VPS39-210ENST00000568357 DLGAP5Q15398 846 aa18.66■□□□□ 0.58
VPS39-210ENST00000568357 MTMR14Q8NCE2 650 aa18.66■□□□□ 0.58
VPS39-210ENST00000568357 ZIC5Q96T25 663 aa18.66■□□□□ 0.58
VPS39-210ENST00000568357 PITPNM2Q9BZ72 1349 aa18.66■□□□□ 0.58
VPS39-210ENST00000568357 ADORA1P30542 326 aa18.65■□□□□ 0.58
VPS39-210ENST00000568357 CFAP100Q494V2 611 aa18.65■□□□□ 0.58
VPS39-210ENST00000568357 PRAMEF18Q5VWM3 479 aa18.65■□□□□ 0.58
VPS39-210ENST00000568357 CDCA5Q96FF9 252 aa18.65■□□□□ 0.58
VPS39-210ENST00000568357 PRMT6Q96LA8 375 aaPredicted RBP18.65■□□□□ 0.58
VPS39-210ENST00000568357 TTF2Q9UNY4 1162 aaKnown RBP18.65■□□□□ 0.58
VPS39-210ENST00000568357 MS4A1P11836 297 aa18.64■□□□□ 0.57
VPS39-210ENST00000568357 PRPF38BQ5VTL8 546 aaKnown RBP18.64■□□□□ 0.57
VPS39-210ENST00000568357 SSH3Q8TE77 659 aa18.64■□□□□ 0.57
VPS39-210ENST00000568357 AOX1Q06278 1338 aa18.64■□□□□ 0.57
VPS39-210ENST00000568357 SPDYE2BA6NHP3 402 aa18.63■□□□□ 0.57
VPS39-210ENST00000568357 SPDYE6P0CI01 402 aa18.63■□□□□ 0.57
VPS39-210ENST00000568357 G3BP1Q13283 466 aaKnown RBP eCLIP18.63■□□□□ 0.57
VPS39-210ENST00000568357 HHIPL1Q96JK4 782 aa18.63■□□□□ 0.57
VPS39-210ENST00000568357 GBA2Q9HCG7 927 aaPredicted RBP18.63■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms