RNA–Protein interactions for RNA: ENST00000568291.2

SF3B3-211, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 1,067 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-211ENST00000568291 ECM29Q5VYK3 1845 aa11.93□□□□□ -0.5
SF3B3-211ENST00000568291 SLC10A3P09131 477 aa11.93□□□□□ -0.5
SF3B3-211ENST00000568291 UBTFL1P0CB47 393 aaPredicted RBP11.93□□□□□ -0.5
SF3B3-211ENST00000568291 ZNF157P51786 506 aaPredicted RBP11.93□□□□□ -0.5
SF3B3-211ENST00000568291 ZNF280AP59817 542 aaPredicted RBP11.93□□□□□ -0.5
SF3B3-211ENST00000568291 RABL6Q3YEC7 729 aaPredicted RBP11.93□□□□□ -0.5
SF3B3-211ENST00000568291 ANGEL2Q5VTE6 544 aaKnown RBP11.93□□□□□ -0.5
SF3B3-211ENST00000568291 AGBL3Q8NEM8 1001 aa11.93□□□□□ -0.5
SF3B3-211ENST00000568291 CCDC102AQ96A19 550 aa11.93□□□□□ -0.5
SF3B3-211ENST00000568291 LEMD3Q9Y2U8 911 aa11.93□□□□□ -0.5
SF3B3-211ENST00000568291 LRRFIP2Q9Y608 721 aaKnown RBP11.93□□□□□ -0.5
SF3B3-211ENST00000568291 MED23Q9ULK4 1368 aa11.92□□□□□ -0.5
SF3B3-211ENST00000568291 KIF23Q02241 960 aaPredicted RBP11.92□□□□□ -0.5
SF3B3-211ENST00000568291 MLLT1Q03111 559 aaPredicted RBP11.92□□□□□ -0.5
SF3B3-211ENST00000568291 ATF7IPQ6VMQ6 1270 aa11.92□□□□□ -0.5
SF3B3-211ENST00000568291 TMEM57Q8N5G2 664 aa11.92□□□□□ -0.5
SF3B3-211ENST00000568291 SIL1Q9H173 461 aa11.92□□□□□ -0.5
SF3B3-211ENST00000568291 SAGE1Q9NXZ1 904 aa11.92□□□□□ -0.5
SF3B3-211ENST00000568291 SCAF8Q9UPN6 1271 aaKnown RBP11.92□□□□□ -0.5
SF3B3-211ENST00000568291 PITPNM2Q9BZ72 1349 aa11.91□□□□□ -0.5
SF3B3-211ENST00000568291 USP17L3A6NCW0 530 aa11.91□□□□□ -0.5
SF3B3-211ENST00000568291 USP17L4A6NCW7 530 aa11.91□□□□□ -0.5
SF3B3-211ENST00000568291 RFX5P48382 616 aaPredicted RBP11.91□□□□□ -0.5
SF3B3-211ENST00000568291 SCARF1Q14162 830 aa11.91□□□□□ -0.5
SF3B3-211ENST00000568291 INTS3Q68E01 1043 aaKnown RBP11.91□□□□□ -0.5
SF3B3-211ENST00000568291 USP17L1Q7RTZ2 530 aa11.91□□□□□ -0.5
SF3B3-211ENST00000568291 RASAL3Q86YV0 1011 aa11.91□□□□□ -0.5
SF3B3-211ENST00000568291 ARHGAP45Q92619 1136 aa11.91□□□□□ -0.5
SF3B3-211ENST00000568291 YTHDC1Q96MU7 727 aaKnown RBP11.91□□□□□ -0.5
SF3B3-211ENST00000568291 GMLQ99445 158 aa11.91□□□□□ -0.5
SF3B3-211ENST00000568291 MYOZ2Q9NPC6 264 aa11.91□□□□□ -0.5
SF3B3-211ENST00000568291 PA2G4Q9UQ80 394 aaKnown RBP11.91□□□□□ -0.5
SF3B3-211ENST00000568291 RIPOR2Q9Y4F9 1068 aa11.91□□□□□ -0.5
SF3B3-211ENST00000568291 KIF16BQ96L93 1317 aa11.9□□□□□ -0.5
SF3B3-211ENST00000568291 IPO8O15397 1037 aaKnown RBP11.9□□□□□ -0.5
SF3B3-211ENST00000568291 USP17L8P0C7I0 530 aa11.9□□□□□ -0.5
SF3B3-211ENST00000568291 RLBP1P12271 317 aa11.9□□□□□ -0.5
SF3B3-211ENST00000568291 GYG1P46976 350 aa11.9□□□□□ -0.5
SF3B3-211ENST00000568291 RGS19P49795 217 aa11.9□□□□□ -0.5
SF3B3-211ENST00000568291 GTF2IP78347 998 aa11.9□□□□□ -0.5
SF3B3-211ENST00000568291 METTL24Q5JXM2 366 aa11.9□□□□□ -0.5
SF3B3-211ENST00000568291 ZKSCAN2Q63HK3 967 aa11.9□□□□□ -0.5
SF3B3-211ENST00000568291 SAMD1Q6SPF0 538 aaPredicted RBP11.9□□□□□ -0.5
SF3B3-211ENST00000568291 PODNQ7Z5L7 613 aa11.9□□□□□ -0.5
SF3B3-211ENST00000568291 COA1Q9GZY4 146 aa11.9□□□□□ -0.5
SF3B3-211ENST00000568291 CD209Q9NNX6 404 aa11.9□□□□□ -0.5
SF3B3-211ENST00000568291 IQSEC3Q9UPP2 1182 aaPredicted RBP11.9□□□□□ -0.5
SF3B3-211ENST00000568291 IRS2Q9Y4H2 1338 aa11.89□□□□□ -0.51
SF3B3-211ENST00000568291 TRPA1O75762 1119 aa11.89□□□□□ -0.51
SF3B3-211ENST00000568291 FKBP1BP68106 108 aa11.89□□□□□ -0.51
SF3B3-211ENST00000568291 PTPN12Q05209 780 aaKnown RBP11.89□□□□□ -0.51
SF3B3-211ENST00000568291 DACT2Q5SW24 774 aa11.89□□□□□ -0.51
SF3B3-211ENST00000568291 TTLL5Q6EMB2 1281 aa11.89□□□□□ -0.51
SF3B3-211ENST00000568291 RNF186Q9NXI6 227 aa11.89□□□□□ -0.51
SF3B3-211ENST00000568291 LAMB1P07942 1786 aa11.88□□□□□ -0.51
SF3B3-211ENST00000568291 F8W031 263 aaPredicted RBP11.88□□□□□ -0.51
SF3B3-211ENST00000568291 KIAA0825Q8IV33 1275 aa11.88□□□□□ -0.51
SF3B3-211ENST00000568291 PANK1Q8TE04 598 aa11.88□□□□□ -0.51
SF3B3-211ENST00000568291 C1orf115Q9H7X2 142 aa11.88□□□□□ -0.51
SF3B3-211ENST00000568291 PCDHAC2Q9Y5I4 1007 aa11.88□□□□□ -0.51
SF3B3-211ENST00000568291 ARAP2Q8WZ64 1704 aa11.88□□□□□ -0.51
SF3B3-211ENST00000568291 MYO3BQ8WXR4 1341 aa11.87□□□□□ -0.51
SF3B3-211ENST00000568291 BCAMP50895 628 aa11.87□□□□□ -0.51
SF3B3-211ENST00000568291 ATG9AQ7Z3C6 839 aa11.87□□□□□ -0.51
SF3B3-211ENST00000568291 CERS5Q8N5B7 392 aa11.87□□□□□ -0.51
SF3B3-211ENST00000568291 FAM84BQ96KN1 310 aaPredicted RBP11.87□□□□□ -0.51
SF3B3-211ENST00000568291 CSRNP1Q96S65 589 aa11.87□□□□□ -0.51
SF3B3-211ENST00000568291 EYA2O00167 538 aa11.86□□□□□ -0.51
SF3B3-211ENST00000568291 SASH1O94885 1247 aa11.86□□□□□ -0.51
SF3B3-211ENST00000568291 NBPF9Q3BBW0 867 aa11.86□□□□□ -0.51
SF3B3-211ENST00000568291 STRIP1Q5VSL9 837 aa11.86□□□□□ -0.51
SF3B3-211ENST00000568291 PRAMEF18Q5VWM3 479 aa11.86□□□□□ -0.51
SF3B3-211ENST00000568291 MOB2Q70IA6 237 aa11.86□□□□□ -0.51
SF3B3-211ENST00000568291 ZNF804AQ7Z570 1209 aa11.86□□□□□ -0.51
SF3B3-211ENST00000568291 ITPRIPQ8IWB1 547 aa11.86□□□□□ -0.51
SF3B3-211ENST00000568291 FTSJ3Q8IY81 847 aaKnown RBP11.86□□□□□ -0.51
SF3B3-211ENST00000568291 REM2Q8IYK8 340 aaPredicted RBP11.86□□□□□ -0.51
SF3B3-211ENST00000568291 DZIP1LQ8IYY4 767 aaKnown RBP11.86□□□□□ -0.51
SF3B3-211ENST00000568291 OGFOD1Q8N543 542 aa11.86□□□□□ -0.51
SF3B3-211ENST00000568291 VGLL2Q8N8G2 317 aa11.86□□□□□ -0.51
SF3B3-211ENST00000568291 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP11.86□□□□□ -0.51
SF3B3-211ENST00000568291 MROH5Q6ZUA9 1318 aa11.86□□□□□ -0.51
SF3B3-211ENST00000568291 OTOFQ9HC10 1997 aa11.85□□□□□ -0.51
SF3B3-211ENST00000568291 COL1A1P02452 1464 aaPredicted RBP11.85□□□□□ -0.51
SF3B3-211ENST00000568291 PNMA6EA0A0J9YXQ4 647 aa11.85□□□□□ -0.51
SF3B3-211ENST00000568291 UBE2Q2LH0YL09 131 aa11.85□□□□□ -0.51
SF3B3-211ENST00000568291 SRGAP3O43295 1099 aa11.85□□□□□ -0.51
SF3B3-211ENST00000568291 PDE8BO95263 885 aa11.85□□□□□ -0.51
SF3B3-211ENST00000568291 SLC34A2O95436 690 aa11.85□□□□□ -0.51
SF3B3-211ENST00000568291 GNAI3P08754 354 aa11.85□□□□□ -0.51
SF3B3-211ENST00000568291 HIBADHP31937 336 aaKnown RBP11.85□□□□□ -0.51
SF3B3-211ENST00000568291 NF2P35240 595 aa11.85□□□□□ -0.51
SF3B3-211ENST00000568291 SOX10P56693 466 aa11.85□□□□□ -0.51
SF3B3-211ENST00000568291 CHAF1AQ13111 956 aaPredicted RBP11.85□□□□□ -0.51
SF3B3-211ENST00000568291 UBE4AQ14139 1066 aa11.85□□□□□ -0.51
SF3B3-211ENST00000568291 TTLL12Q14166 644 aaPredicted RBP11.85□□□□□ -0.51
SF3B3-211ENST00000568291 GRIK5Q16478 980 aa11.85□□□□□ -0.51
SF3B3-211ENST00000568291 C15orf52Q6ZUT6 534 aaKnown RBP11.85□□□□□ -0.51
SF3B3-211ENST00000568291 CTU1Q7Z7A3 348 aaKnown RBP11.85□□□□□ -0.51
SF3B3-211ENST00000568291 WNT10BO00744 389 aa11.84□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms