RNA–Protein interactions for RNA: ENST00000566926.1

CLK3-218, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-218ENST00000566926 TDRD7Q8NHU6 1098 aaKnown RBP16.64■□□□□ 0.25
CLK3-218ENST00000566926 LPIN2Q92539 896 aa16.64■□□□□ 0.25
CLK3-218ENST00000566926 ECM29Q5VYK3 1845 aa16.63■□□□□ 0.25
CLK3-218ENST00000566926 FRAT2O75474 233 aaPredicted RBP16.63■□□□□ 0.25
CLK3-218ENST00000566926 FBXO33Q7Z6M2 555 aa16.63■□□□□ 0.25
CLK3-218ENST00000566926 FAM205AQ6ZU69 1335 aa16.63■□□□□ 0.25
CLK3-218ENST00000566926 ARAP2Q8WZ64 1704 aa16.62■□□□□ 0.25
CLK3-218ENST00000566926 EGFRP00533 1210 aa16.62■□□□□ 0.25
CLK3-218ENST00000566926 FGFR2P21802 821 aa16.62■□□□□ 0.25
CLK3-218ENST00000566926 SCARF1Q14162 830 aa16.62■□□□□ 0.25
CLK3-218ENST00000566926 KRT26Q7Z3Y9 468 aa16.62■□□□□ 0.25
CLK3-218ENST00000566926 KIAA0825Q8IV33 1275 aa16.62■□□□□ 0.25
CLK3-218ENST00000566926 SULF1Q8IWU6 871 aa16.62■□□□□ 0.25
CLK3-218ENST00000566926 CRBNQ96SW2 442 aa16.62■□□□□ 0.25
CLK3-218ENST00000566926 MXD3Q9BW11 206 aa16.62■□□□□ 0.25
CLK3-218ENST00000566926 GLIS2Q9BZE0 524 aaPredicted RBP16.62■□□□□ 0.25
CLK3-218ENST00000566926 DDX19BQ9UMR2 479 aa16.62■□□□□ 0.25
CLK3-218ENST00000566926 PA2G4Q9UQ80 394 aaKnown RBP16.62■□□□□ 0.25
CLK3-218ENST00000566926 ZBTB7BO15156 539 aaPredicted RBP16.61■□□□□ 0.25
CLK3-218ENST00000566926 RLBP1P12271 317 aa16.61■□□□□ 0.25
CLK3-218ENST00000566926 MVPQ14764 893 aaKnown RBP16.61■□□□□ 0.25
CLK3-218ENST00000566926 ATP2B3Q16720 1220 aa16.61■□□□□ 0.25
CLK3-218ENST00000566926 C20orf194Q5TEA3 1177 aa16.61■□□□□ 0.25
CLK3-218ENST00000566926 TBC1D22AQ8WUA7 517 aa16.61■□□□□ 0.25
CLK3-218ENST00000566926 GGA3Q9NZ52 723 aa16.61■□□□□ 0.25
CLK3-218ENST00000566926 AKAP2Q9Y2D5 859 aa16.61■□□□□ 0.25
CLK3-218ENST00000566926 PITPNM2Q9BZ72 1349 aa16.61■□□□□ 0.25
CLK3-218ENST00000566926 TRAF5O00463 557 aa16.6■□□□□ 0.25
CLK3-218ENST00000566926 G3BP1Q13283 466 aaKnown RBP eCLIP16.6■□□□□ 0.25
CLK3-218ENST00000566926 USP48Q86UV5 1035 aa16.6■□□□□ 0.25
CLK3-218ENST00000566926 EXOC6Q8TAG9 804 aa16.6■□□□□ 0.25
CLK3-218ENST00000566926 GNL3LQ9NVN8 582 aaKnown RBP16.6■□□□□ 0.25
CLK3-218ENST00000566926 ABT1Q9ULW3 272 aaKnown RBP16.6■□□□□ 0.25
CLK3-218ENST00000566926 CELF2O95319 508 aaKnown RBP16.59■□□□□ 0.25
CLK3-218ENST00000566926 ATP8B2P98198 1209 aa16.59■□□□□ 0.25
CLK3-218ENST00000566926 DLGAP5Q15398 846 aa16.59■□□□□ 0.25
CLK3-218ENST00000566926 DEFB115Q30KQ5 88 aa16.59■□□□□ 0.25
CLK3-218ENST00000566926 MFSD14BQ5SR56 506 aa16.59■□□□□ 0.25
CLK3-218ENST00000566926 ANGEL2Q5VTE6 544 aaKnown RBP16.59■□□□□ 0.25
CLK3-218ENST00000566926 PANK1Q8TE04 598 aa16.59■□□□□ 0.25
CLK3-218ENST00000566926 PNMA6EA0A0J9YXQ4 647 aa16.58■□□□□ 0.24
CLK3-218ENST00000566926 WNT10BO00744 389 aa16.58■□□□□ 0.24
CLK3-218ENST00000566926 BCAMP50895 628 aa16.58■□□□□ 0.24
CLK3-218ENST00000566926 CERS5Q8N5B7 392 aa16.58■□□□□ 0.24
CLK3-218ENST00000566926 JMYQ8N9B5 988 aa16.58■□□□□ 0.24
CLK3-218ENST00000566926 MTMR14Q8NCE2 650 aa16.58■□□□□ 0.24
CLK3-218ENST00000566926 MKRN1Q9UHC7 482 aaKnown RBP16.58■□□□□ 0.24
CLK3-218ENST00000566926 CNTNAP1P78357 1384 aa16.58■□□□□ 0.24
CLK3-218ENST00000566926 RASSF10A6NK89 507 aa16.57■□□□□ 0.24
CLK3-218ENST00000566926 MYO1BO43795 1136 aa16.57■□□□□ 0.24
CLK3-218ENST00000566926 FMR1Q06787 632 aaKnown RBP eCLIP16.57■□□□□ 0.24
CLK3-218ENST00000566926 CHAF1AQ13111 956 aaPredicted RBP16.57■□□□□ 0.24
CLK3-218ENST00000566926 NBPF9Q3BBW0 867 aa16.57■□□□□ 0.24
CLK3-218ENST00000566926 CST9Q5W186 159 aa16.57■□□□□ 0.24
CLK3-218ENST00000566926 SSH3Q8TE77 659 aa16.57■□□□□ 0.24
CLK3-218ENST00000566926 CCDC136Q96JN2 1154 aa16.57■□□□□ 0.24
CLK3-218ENST00000566926 ZNF408Q9H9D4 720 aa16.57■□□□□ 0.24
CLK3-218ENST00000566926 IQSEC3Q9UPP2 1182 aaPredicted RBP16.57■□□□□ 0.24
CLK3-218ENST00000566926 JAG2Q9Y219 1238 aa16.57■□□□□ 0.24
CLK3-218ENST00000566926 COG6Q9Y2V7 657 aa16.57■□□□□ 0.24
CLK3-218ENST00000566926 F8W031 263 aaPredicted RBP16.56■□□□□ 0.24
CLK3-218ENST00000566926 SEMA3EO15041 775 aa16.56■□□□□ 0.24
CLK3-218ENST00000566926 POLA2Q14181 598 aa16.56■□□□□ 0.24
CLK3-218ENST00000566926 APOBEC3FQ8IUX4 373 aaKnown RBP16.56■□□□□ 0.24
CLK3-218ENST00000566926 WDR66Q8TBY9 1149 aa16.56■□□□□ 0.24
CLK3-218ENST00000566926 SUGT1Q9Y2Z0 365 aa16.56■□□□□ 0.24
CLK3-218ENST00000566926 TLL2Q9Y6L7 1015 aa16.56■□□□□ 0.24
CLK3-218ENST00000566926 MAST3O60307 1309 aa16.55■□□□□ 0.24
CLK3-218ENST00000566926 ADM5C9JUS6 153 aa16.55■□□□□ 0.24
CLK3-218ENST00000566926 ZBTB22O15209 634 aa16.55■□□□□ 0.24
CLK3-218ENST00000566926 ECE1P42892 770 aa16.55■□□□□ 0.24
CLK3-218ENST00000566926 RBM5P52756 815 aaKnown RBP eCLIP16.55■□□□□ 0.24
CLK3-218ENST00000566926 TFCP2Q12800 502 aa16.55■□□□□ 0.24
CLK3-218ENST00000566926 OS9Q13438 667 aaPredicted RBP16.55■□□□□ 0.24
CLK3-218ENST00000566926 CFAP100Q494V2 611 aa16.55■□□□□ 0.24
CLK3-218ENST00000566926 C2orf69Q8N8R5 385 aa16.55■□□□□ 0.24
CLK3-218ENST00000566926 ZBED3Q96IU2 234 aaPredicted RBP16.55■□□□□ 0.24
CLK3-218ENST00000566926 HHIPL1Q96JK4 782 aa16.55■□□□□ 0.24
CLK3-218ENST00000566926 C1orf115Q9H7X2 142 aa16.55■□□□□ 0.24
CLK3-218ENST00000566926 SERPINA10Q9UK55 444 aa16.55■□□□□ 0.24
CLK3-218ENST00000566926 TTF2Q9UNY4 1162 aaKnown RBP16.55■□□□□ 0.24
CLK3-218ENST00000566926 ASTN2O75129 1339 aaPredicted RBP16.54■□□□□ 0.24
CLK3-218ENST00000566926 A0A1B0GUL7 405 aa16.54■□□□□ 0.24
CLK3-218ENST00000566926 HDLBPQ00341 1268 aaKnown RBP16.54■□□□□ 0.24
CLK3-218ENST00000566926 DENND2AQ9ULE3 1009 aa16.54■□□□□ 0.24
CLK3-218ENST00000566926 SURF6O75683 361 aaKnown RBP16.53■□□□□ 0.24
CLK3-218ENST00000566926 NF2P35240 595 aa16.53■□□□□ 0.24
CLK3-218ENST00000566926 TIMM10P62072 90 aa16.53■□□□□ 0.24
CLK3-218ENST00000566926 PAXIP1Q6ZW49 1069 aaPredicted RBP16.53■□□□□ 0.24
CLK3-218ENST00000566926 SAPCD2Q86UD0 394 aa16.53■□□□□ 0.24
CLK3-218ENST00000566926 CDCA5Q96FF9 252 aa16.53■□□□□ 0.24
CLK3-218ENST00000566926 NEUROD6Q96NK8 337 aa16.53■□□□□ 0.24
CLK3-218ENST00000566926 MRIQ9BWK5 157 aa16.53■□□□□ 0.24
CLK3-218ENST00000566926 GBA2Q9HCG7 927 aaPredicted RBP16.53■□□□□ 0.24
CLK3-218ENST00000566926 SPDYE2BA6NHP3 402 aa16.52■□□□□ 0.24
CLK3-218ENST00000566926 SPDYE6P0CI01 402 aa16.52■□□□□ 0.24
CLK3-218ENST00000566926 VEGFBP49765 207 aa16.52■□□□□ 0.24
CLK3-218ENST00000566926 FKBP1BP68106 108 aa16.52■□□□□ 0.24
CLK3-218ENST00000566926 GORABQ5T7V8 394 aa16.52■□□□□ 0.24
CLK3-218ENST00000566926 CCDC102BQ68D86 513 aa16.52■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms