RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 FAM205AQ6ZU69 1335 aa24.12■■□□□ 1.45
CLN3-225ENST00000566824 ADAMTSL1Q8N6G6 1762 aa24.12■■□□□ 1.45
CLN3-225ENST00000566824 CHAF1AQ13111 956 aaPredicted RBP24.11■■□□□ 1.45
CLN3-225ENST00000566824 GRIK5Q16478 980 aa24.11■■□□□ 1.45
CLN3-225ENST00000566824 DPF2Q92785 391 aa24.11■■□□□ 1.45
CLN3-225ENST00000566824 CCDC8Q9H0W5 538 aaPredicted RBP24.11■■□□□ 1.45
CLN3-225ENST00000566824 DCTPP1Q9H773 170 aa24.11■■□□□ 1.45
CLN3-225ENST00000566824 IQCA1LA6NCM1 817 aa24.1■■□□□ 1.45
CLN3-225ENST00000566824 RPS12P25398 132 aaKnown RBP24.1■■□□□ 1.45
CLN3-225ENST00000566824 LMOD1P29536 600 aaPredicted RBP24.1■■□□□ 1.45
CLN3-225ENST00000566824 TRPM4Q8TD43 1214 aa24.1■■□□□ 1.45
CLN3-225ENST00000566824 SMARCA5O60264 1052 aaPredicted RBP24.1■■□□□ 1.45
CLN3-225ENST00000566824 HIRAP54198 1017 aaPredicted RBP24.1■■□□□ 1.45
CLN3-225ENST00000566824 HSP90AB4PQ58FF6 505 aa24.1■■□□□ 1.45
CLN3-225ENST00000566824 SAMD7Q7Z3H4 446 aa24.1■■□□□ 1.45
CLN3-225ENST00000566824 ERC1Q8IUD2 1116 aa24.1■■□□□ 1.45
CLN3-225ENST00000566824 AGBL3Q8NEM8 1001 aa24.1■■□□□ 1.45
CLN3-225ENST00000566824 BCL11AQ9H165 835 aa24.1■■□□□ 1.45
CLN3-225ENST00000566824 DBNLQ9UJU6 430 aaKnown RBP24.1■■□□□ 1.45
CLN3-225ENST00000566824 AKAP11Q9UKA4 1901 aa24.08■■□□□ 1.45
CLN3-225ENST00000566824 RAB11FIP3O75154 756 aa24.08■■□□□ 1.44
CLN3-225ENST00000566824 SCARF1Q14162 830 aa24.08■■□□□ 1.44
CLN3-225ENST00000566824 TBC1D10BQ4KMP7 808 aaPredicted RBP24.08■■□□□ 1.44
CLN3-225ENST00000566824 EAPPQ56P03 285 aaPredicted RBP24.08■■□□□ 1.44
CLN3-225ENST00000566824 KIAA0825Q8IV33 1275 aa24.08■■□□□ 1.44
CLN3-225ENST00000566824 KIF1BPQ96EK5 621 aa24.08■■□□□ 1.44
CLN3-225ENST00000566824 FRAT2O75474 233 aaPredicted RBP24.07■■□□□ 1.44
CLN3-225ENST00000566824 ZNF280AP59817 542 aaPredicted RBP24.07■■□□□ 1.44
CLN3-225ENST00000566824 RASGRF1Q13972 1273 aa24.07■■□□□ 1.44
CLN3-225ENST00000566824 PI16Q6UXB8 463 aa24.07■■□□□ 1.44
CLN3-225ENST00000566824 AACSQ86V21 672 aa24.07■■□□□ 1.44
CLN3-225ENST00000566824 ADARB2Q9NS39 739 aaKnown RBP24.07■■□□□ 1.44
CLN3-225ENST00000566824 F8W031 263 aaPredicted RBP24.06■■□□□ 1.44
CLN3-225ENST00000566824 IGHDP01880 384 aa24.06■■□□□ 1.44
CLN3-225ENST00000566824 USP17L8P0C7I0 530 aa24.06■■□□□ 1.44
CLN3-225ENST00000566824 MFSD14BQ5SR56 506 aa24.06■■□□□ 1.44
CLN3-225ENST00000566824 GORABQ5T7V8 394 aa24.06■■□□□ 1.44
CLN3-225ENST00000566824 RBM26Q5T8P6 1007 aaKnown RBP24.06■■□□□ 1.44
CLN3-225ENST00000566824 H7C1D1 291 aa24.05■■□□□ 1.44
CLN3-225ENST00000566824 POLR2AP24928 1970 aaKnown RBP24.05■■□□□ 1.44
CLN3-225ENST00000566824 HDAC1Q13547 482 aaPredicted RBP24.05■■□□□ 1.44
CLN3-225ENST00000566824 AAMPQ13685 434 aa24.05■■□□□ 1.44
CLN3-225ENST00000566824 C16orf71Q8IYS4 520 aaPredicted RBP24.05■■□□□ 1.44
CLN3-225ENST00000566824 PCDHAC2Q9Y5I4 1007 aa24.05■■□□□ 1.44
CLN3-225ENST00000566824 ASTN2O75129 1339 aaPredicted RBP24.04■■□□□ 1.44
CLN3-225ENST00000566824 MYO3BQ8WXR4 1341 aa24.04■■□□□ 1.44
CLN3-225ENST00000566824 TOMM70O94826 608 aa24.04■■□□□ 1.44
CLN3-225ENST00000566824 FKBP1AP62942 108 aaKnown RBP24.04■■□□□ 1.44
CLN3-225ENST00000566824 GNL3LQ9NVN8 582 aaKnown RBP24.04■■□□□ 1.44
CLN3-225ENST00000566824 HMG20BQ9P0W2 317 aa24.04■■□□□ 1.44
CLN3-225ENST00000566824 ARID4AP29374 1257 aaPredicted RBP24.03■■□□□ 1.44
CLN3-225ENST00000566824 MCAMP43121 646 aa24.03■■□□□ 1.44
CLN3-225ENST00000566824 USP50Q70EL3 339 aaPredicted RBP24.03■■□□□ 1.44
CLN3-225ENST00000566824 LRRCC1Q9C099 1032 aa24.03■■□□□ 1.44
CLN3-225ENST00000566824 MYO5AQ9Y4I1 1855 aaKnown RBP24.03■■□□□ 1.44
CLN3-225ENST00000566824 PNMA8AQ86V59 439 aaPredicted RBP24.02■■□□□ 1.44
CLN3-225ENST00000566824 MYOZ2Q9NPC6 264 aa24.02■■□□□ 1.44
CLN3-225ENST00000566824 SNRKQ9NRH2 765 aa24.02■■□□□ 1.44
CLN3-225ENST00000566824 AOX1Q06278 1338 aa24.01■■□□□ 1.43
CLN3-225ENST00000566824 SEMA3EO15041 775 aa24.01■■□□□ 1.43
CLN3-225ENST00000566824 KIF4BQ2VIQ3 1234 aa24.01■■□□□ 1.43
CLN3-225ENST00000566824 CLASRPQ8N2M8 674 aaKnown RBP24.01■■□□□ 1.43
CLN3-225ENST00000566824 RBM46Q8TBY0 533 aaKnown RBP24.01■■□□□ 1.43
CLN3-225ENST00000566824 DENND2AQ9ULE3 1009 aa24.01■■□□□ 1.43
CLN3-225ENST00000566824 CLEC11AQ9Y240 323 aa24.01■■□□□ 1.43
CLN3-225ENST00000566824 ZBTB22O15209 634 aa24■■□□□ 1.43
CLN3-225ENST00000566824 TTC39AQ5SRH9 613 aa24■■□□□ 1.43
CLN3-225ENST00000566824 MAP1SQ66K74 1059 aaPredicted RBP24■■□□□ 1.43
CLN3-225ENST00000566824 LDHDQ86WU2 507 aa24■■□□□ 1.43
CLN3-225ENST00000566824 CHADLQ6NUI6 762 aa23.99■■□□□ 1.43
CLN3-225ENST00000566824 SPATA5Q8NB90 893 aa23.99■■□□□ 1.43
CLN3-225ENST00000566824 WDR66Q8TBY9 1149 aa23.99■■□□□ 1.43
CLN3-225ENST00000566824 TBC1D22AQ8WUA7 517 aa23.99■■□□□ 1.43
CLN3-225ENST00000566824 TTF2Q9UNY4 1162 aaKnown RBP23.99■■□□□ 1.43
CLN3-225ENST00000566824 NDUFB9Q9Y6M9 179 aa23.99■■□□□ 1.43
CLN3-225ENST00000566824 CENPBP07199 599 aaPredicted RBP23.98■■□□□ 1.43
CLN3-225ENST00000566824 UQCRFS1P1P0C7P4 283 aa23.98■■□□□ 1.43
CLN3-225ENST00000566824 PRDX5P30044 214 aa23.98■■□□□ 1.43
CLN3-225ENST00000566824 NBPF9Q3BBW0 867 aa23.98■■□□□ 1.43
CLN3-225ENST00000566824 CCDC158Q5M9N0 1113 aa23.98■■□□□ 1.43
CLN3-225ENST00000566824 TBC1D9Q6ZT07 1266 aa23.98■■□□□ 1.43
CLN3-225ENST00000566824 ZBED3Q96IU2 234 aaPredicted RBP23.98■■□□□ 1.43
CLN3-225ENST00000566824 IFIT2P09913 472 aaKnown RBP23.97■■□□□ 1.43
CLN3-225ENST00000566824 DLK2Q6UY11 383 aa23.97■■□□□ 1.43
CLN3-225ENST00000566824 OGFOD1Q8N543 542 aa23.97■■□□□ 1.43
CLN3-225ENST00000566824 OTUD7AQ8TE49 926 aaPredicted RBP23.97■■□□□ 1.43
CLN3-225ENST00000566824 RWDD1Q9H446 243 aaPredicted RBP23.97■■□□□ 1.43
CLN3-225ENST00000566824 PDS5AQ29RF7 1337 aaKnown RBP23.96■■□□□ 1.43
CLN3-225ENST00000566824 SALL1Q9NSC2 1324 aa23.96■■□□□ 1.43
CLN3-225ENST00000566824 FMR1Q06787 632 aaKnown RBP eCLIP23.96■■□□□ 1.43
CLN3-225ENST00000566824 CFAP100Q494V2 611 aa23.96■■□□□ 1.43
CLN3-225ENST00000566824 SMC1BQ8NDV3 1235 aa23.96■■□□□ 1.43
CLN3-225ENST00000566824 ZNF512BQ96KM6 892 aaPredicted RBP23.96■■□□□ 1.43
CLN3-225ENST00000566824 PGAP2Q9UHJ9 254 aa23.96■■□□□ 1.43
CLN3-225ENST00000566824 SCAF8Q9UPN6 1271 aaKnown RBP23.96■■□□□ 1.43
CLN3-225ENST00000566824 ECM29Q5VYK3 1845 aa23.95■■□□□ 1.43
CLN3-225ENST00000566824 WNT10BO00744 389 aa23.95■■□□□ 1.42
CLN3-225ENST00000566824 ZAP70P43403 619 aa23.95■■□□□ 1.42
CLN3-225ENST00000566824 C1QTNF8P60827 252 aa23.95■■□□□ 1.42
CLN3-225ENST00000566824 HDAC9Q9UKV0 1011 aa23.95■■□□□ 1.42
Retrieved 100 of 20,778 RNA–protein pairs in 62.1 ms