RNA–Protein interactions for RNA: ENST00000566466.1

SMPD3-207, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 4

Gene SMPD3, Length 582 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-207ENST00000566466 HMG20BQ9P0W2 317 aa11.34□□□□□ -0.59
SMPD3-207ENST00000566466 FAM205AQ6ZU69 1335 aa11.34□□□□□ -0.59
SMPD3-207ENST00000566466 GSPT1P15170 499 aaKnown RBP11.33□□□□□ -0.6
SMPD3-207ENST00000566466 KCNJ4P48050 445 aa11.33□□□□□ -0.6
SMPD3-207ENST00000566466 PDE1AP54750 535 aa11.33□□□□□ -0.6
SMPD3-207ENST00000566466 DACT2Q5SW24 774 aa11.33□□□□□ -0.6
SMPD3-207ENST00000566466 LARGE2Q8N3Y3 721 aa11.33□□□□□ -0.6
SMPD3-207ENST00000566466 EDC3Q96F86 508 aaKnown RBP11.33□□□□□ -0.6
SMPD3-207ENST00000566466 NEUROD6Q96NK8 337 aa11.33□□□□□ -0.6
SMPD3-207ENST00000566466 GMLQ99445 158 aa11.33□□□□□ -0.6
SMPD3-207ENST00000566466 ZC3H12CQ9C0D7 883 aaKnown RBP11.33□□□□□ -0.6
SMPD3-207ENST00000566466 OSBPL3Q9H4L5 887 aa11.33□□□□□ -0.6
SMPD3-207ENST00000566466 PDS5AQ29RF7 1337 aaKnown RBP11.33□□□□□ -0.6
SMPD3-207ENST00000566466 ATP5JP18859 108 aa11.32□□□□□ -0.6
SMPD3-207ENST00000566466 CXCL9Q07325 125 aa11.32□□□□□ -0.6
SMPD3-207ENST00000566466 ZNF804AQ7Z570 1209 aa11.32□□□□□ -0.6
SMPD3-207ENST00000566466 PODNQ7Z5L7 613 aa11.32□□□□□ -0.6
SMPD3-207ENST00000566466 PPIL4Q8WUA2 492 aaKnown RBP eCLIP11.32□□□□□ -0.6
SMPD3-207ENST00000566466 ANTXR1Q9H6X2 564 aa11.32□□□□□ -0.6
SMPD3-207ENST00000566466 RNF181Q9P0P0 153 aa11.32□□□□□ -0.6
SMPD3-207ENST00000566466 ZNRF3Q9ULT6 936 aa11.32□□□□□ -0.6
SMPD3-207ENST00000566466 JAG2Q9Y219 1238 aa11.32□□□□□ -0.6
SMPD3-207ENST00000566466 DOCK2Q92608 1830 aa11.32□□□□□ -0.6
SMPD3-207ENST00000566466 ADAMTSL1Q8N6G6 1762 aa11.31□□□□□ -0.6
SMPD3-207ENST00000566466 SHTN1A0MZ66 631 aa11.31□□□□□ -0.6
SMPD3-207ENST00000566466 PSMD14O00487 310 aa11.31□□□□□ -0.6
SMPD3-207ENST00000566466 CHGBP05060 677 aa11.31□□□□□ -0.6
SMPD3-207ENST00000566466 CYP2E1P05181 493 aaPredicted RBP11.31□□□□□ -0.6
SMPD3-207ENST00000566466 IFIT2P09913 472 aaKnown RBP11.31□□□□□ -0.6
SMPD3-207ENST00000566466 MX1P20591 662 aa11.31□□□□□ -0.6
SMPD3-207ENST00000566466 ZAP70P43403 619 aa11.31□□□□□ -0.6
SMPD3-207ENST00000566466 NIM1KQ8IY84 436 aa11.31□□□□□ -0.6
SMPD3-207ENST00000566466 TMX4Q9H1E5 349 aaPredicted RBP11.31□□□□□ -0.6
SMPD3-207ENST00000566466 PIH1D3Q9NQM4 214 aaKnown RBP11.31□□□□□ -0.6
SMPD3-207ENST00000566466 ECHDC1Q9NTX5 307 aa11.31□□□□□ -0.6
SMPD3-207ENST00000566466 AOX1Q06278 1338 aa11.31□□□□□ -0.6
SMPD3-207ENST00000566466 TTC41PQ6P2S7 1318 aa11.31□□□□□ -0.6
SMPD3-207ENST00000566466 SALL1Q9NSC2 1324 aa11.31□□□□□ -0.6
SMPD3-207ENST00000566466 ABCB7O75027 752 aa11.3□□□□□ -0.6
SMPD3-207ENST00000566466 RAD17O75943 681 aa11.3□□□□□ -0.6
SMPD3-207ENST00000566466 VIL1P09327 827 aaKnown RBP11.3□□□□□ -0.6
SMPD3-207ENST00000566466 STRIP1Q5VSL9 837 aa11.3□□□□□ -0.6
SMPD3-207ENST00000566466 SPATA5Q8NB90 893 aa11.3□□□□□ -0.6
SMPD3-207ENST00000566466 HAUS7Q99871 368 aa11.3□□□□□ -0.6
SMPD3-207ENST00000566466 SNRKQ9NRH2 765 aa11.3□□□□□ -0.6
SMPD3-207ENST00000566466 POTECB2RU33 542 aa11.29□□□□□ -0.6
SMPD3-207ENST00000566466 SEMA3EO15041 775 aa11.29□□□□□ -0.6
SMPD3-207ENST00000566466 PRDX5P30044 214 aa11.29□□□□□ -0.6
SMPD3-207ENST00000566466 SCNN1DP51172 638 aa11.29□□□□□ -0.6
SMPD3-207ENST00000566466 GTF2IP78347 998 aa11.29□□□□□ -0.6
SMPD3-207ENST00000566466 CAVIN4Q5BKX8 364 aa11.29□□□□□ -0.6
SMPD3-207ENST00000566466 TTC39AQ5SRH9 613 aa11.29□□□□□ -0.6
SMPD3-207ENST00000566466 TBC1D9Q6ZT07 1266 aa11.29□□□□□ -0.6
SMPD3-207ENST00000566466 BCL11AQ9H165 835 aa11.29□□□□□ -0.6
SMPD3-207ENST00000566466 BOLA2Q9H3K6 86 aa11.29□□□□□ -0.6
SMPD3-207ENST00000566466 ZBTB12Q9Y330 459 aaPredicted RBP11.29□□□□□ -0.6
SMPD3-207ENST00000566466 MYO5AQ9Y4I1 1855 aaKnown RBP11.29□□□□□ -0.6
SMPD3-207ENST00000566466 ZC3H4Q9UPT8 1303 aaKnown RBP11.29□□□□□ -0.6
SMPD3-207ENST00000566466 MYH13Q9UKX3 1938 aa11.29□□□□□ -0.6
SMPD3-207ENST00000566466 MAST2Q6P0Q8 1798 aa11.28□□□□□ -0.6
SMPD3-207ENST00000566466 USP17L3A6NCW0 530 aa11.28□□□□□ -0.6
SMPD3-207ENST00000566466 USP17L4A6NCW7 530 aa11.28□□□□□ -0.6
SMPD3-207ENST00000566466 UQCRFS1P1P0C7P4 283 aa11.28□□□□□ -0.6
SMPD3-207ENST00000566466 FKBP1AP62942 108 aaKnown RBP11.28□□□□□ -0.6
SMPD3-207ENST00000566466 SLFNL1Q499Z3 407 aa11.28□□□□□ -0.6
SMPD3-207ENST00000566466 CCDC158Q5M9N0 1113 aa11.28□□□□□ -0.6
SMPD3-207ENST00000566466 RSBN1LQ6PCB5 846 aaPredicted RBP11.28□□□□□ -0.6
SMPD3-207ENST00000566466 USP17L1Q7RTZ2 530 aa11.28□□□□□ -0.6
SMPD3-207ENST00000566466 PCDHAC2Q9Y5I4 1007 aa11.28□□□□□ -0.6
SMPD3-207ENST00000566466 WDR90Q96KV7 1748 aa11.28□□□□□ -0.6
SMPD3-207ENST00000566466 DDNO94850 711 aaPredicted RBP11.27□□□□□ -0.61
SMPD3-207ENST00000566466 EGFRP00533 1210 aa11.27□□□□□ -0.61
SMPD3-207ENST00000566466 CHAF1AQ13111 956 aaPredicted RBP11.27□□□□□ -0.61
SMPD3-207ENST00000566466 TTC22Q5TAA0 569 aa11.27□□□□□ -0.61
SMPD3-207ENST00000566466 CIAPIN1Q6FI81 312 aa11.27□□□□□ -0.61
SMPD3-207ENST00000566466 ADGRA1Q86SQ6 560 aa11.27□□□□□ -0.61
SMPD3-207ENST00000566466 JDP2Q8WYK2 163 aa11.27□□□□□ -0.61
SMPD3-207ENST00000566466 DENND2AQ9ULE3 1009 aa11.27□□□□□ -0.61
SMPD3-207ENST00000566466 TCRBV5S4A2TA0A5A2 114 aa11.26□□□□□ -0.61
SMPD3-207ENST00000566466 GOLIM4O00461 696 aa11.26□□□□□ -0.61
SMPD3-207ENST00000566466 GLRX3O76003 335 aaKnown RBP11.26□□□□□ -0.61
SMPD3-207ENST00000566466 MAP4K4O95819 1239 aaPredicted RBP11.26□□□□□ -0.61
SMPD3-207ENST00000566466 GMPSP49915 693 aaPredicted RBP11.26□□□□□ -0.61
SMPD3-207ENST00000566466 MKRN4PQ13434 485 aaPredicted RBP11.26□□□□□ -0.61
SMPD3-207ENST00000566466 MFSD14BQ5SR56 506 aa11.26□□□□□ -0.61
SMPD3-207ENST00000566466 GORABQ5T7V8 394 aa11.26□□□□□ -0.61
SMPD3-207ENST00000566466 TTLL5Q6EMB2 1281 aa11.26□□□□□ -0.61
SMPD3-207ENST00000566466 VPS37DQ86XT2 251 aa11.26□□□□□ -0.61
SMPD3-207ENST00000566466 ZBED3Q96IU2 234 aaPredicted RBP11.26□□□□□ -0.61
SMPD3-207ENST00000566466 L3MBTL3Q96JM7 780 aaPredicted RBP11.26□□□□□ -0.61
SMPD3-207ENST00000566466 ZNF280AP59817 542 aaPredicted RBP11.25□□□□□ -0.61
SMPD3-207ENST00000566466 GPC2Q8N158 579 aa11.25□□□□□ -0.61
SMPD3-207ENST00000566466 WDR66Q8TBY9 1149 aa11.25□□□□□ -0.61
SMPD3-207ENST00000566466 NSUN4Q96CB9 384 aaKnown RBP11.25□□□□□ -0.61
SMPD3-207ENST00000566466 DNAJC2Q99543 621 aaKnown RBP11.25□□□□□ -0.61
SMPD3-207ENST00000566466 IL25Q9H293 177 aa11.25□□□□□ -0.61
SMPD3-207ENST00000566466 GNL3LQ9NVN8 582 aaKnown RBP11.25□□□□□ -0.61
SMPD3-207ENST00000566466 PAG1Q9NWQ8 432 aa11.25□□□□□ -0.61
SMPD3-207ENST00000566466 RFX7Q2KHR2 1363 aa11.25□□□□□ -0.61
SMPD3-207ENST00000566466 GLTPD2A6NH11 291 aa11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms