RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 DLGAP5Q15398 846 aa25.96■■□□□ 1.75
CLN3-219ENST00000565778 RGMBQ6NW40 437 aa25.96■■□□□ 1.75
CLN3-219ENST00000565778 VPS37DQ86XT2 251 aa25.96■■□□□ 1.75
CLN3-219ENST00000565778 HDAC5Q9UQL6 1122 aa25.96■■□□□ 1.75
CLN3-219ENST00000565778 PDE8BO95263 885 aa25.95■■□□□ 1.74
CLN3-219ENST00000565778 LBX1P52954 281 aa25.95■■□□□ 1.74
CLN3-219ENST00000565778 FKBP1AP62942 108 aaKnown RBP25.95■■□□□ 1.74
CLN3-219ENST00000565778 PRAMEF18Q5VWM3 479 aa25.95■■□□□ 1.74
CLN3-219ENST00000565778 TDRD7Q8NHU6 1098 aaKnown RBP25.95■■□□□ 1.74
CLN3-219ENST00000565778 ARHGAP45Q92619 1136 aa25.95■■□□□ 1.74
CLN3-219ENST00000565778 KIF16BQ96L93 1317 aa25.94■■□□□ 1.74
CLN3-219ENST00000565778 ZNF157P51786 506 aaPredicted RBP25.94■■□□□ 1.74
CLN3-219ENST00000565778 CAVIN4Q5BKX8 364 aa25.94■■□□□ 1.74
CLN3-219ENST00000565778 PRDM10Q9NQV6 1147 aa25.94■■□□□ 1.74
CLN3-219ENST00000565778 IPO8O15397 1037 aaKnown RBP25.93■■□□□ 1.74
CLN3-219ENST00000565778 NOGQ13253 232 aa25.93■■□□□ 1.74
CLN3-219ENST00000565778 CCDC102AQ96A19 550 aa25.93■■□□□ 1.74
CLN3-219ENST00000565778 FRAT2O75474 233 aaPredicted RBP25.92■■□□□ 1.74
CLN3-219ENST00000565778 RFX5P48382 616 aaPredicted RBP25.92■■□□□ 1.74
CLN3-219ENST00000565778 FRAT1Q92837 279 aaPredicted RBP25.92■■□□□ 1.74
CLN3-219ENST00000565778 FAM205AQ6ZU69 1335 aa25.91■■□□□ 1.74
CLN3-219ENST00000565778 EYA2O00167 538 aa25.91■■□□□ 1.74
CLN3-219ENST00000565778 BCAR3O75815 825 aa25.91■■□□□ 1.74
CLN3-219ENST00000565778 HSPA8P11142 646 aaKnown RBP25.91■■□□□ 1.74
CLN3-219ENST00000565778 RBM5P52756 815 aaKnown RBP eCLIP25.91■■□□□ 1.74
CLN3-219ENST00000565778 PTPN12Q05209 780 aaKnown RBP25.91■■□□□ 1.74
CLN3-219ENST00000565778 CFAP100Q494V2 611 aa25.91■■□□□ 1.74
CLN3-219ENST00000565778 FBXO33Q7Z6M2 555 aa25.91■■□□□ 1.74
CLN3-219ENST00000565778 ZBED3Q96IU2 234 aaPredicted RBP25.91■■□□□ 1.74
CLN3-219ENST00000565778 NF2P35240 595 aa25.9■■□□□ 1.74
CLN3-219ENST00000565778 FKBP1BP68106 108 aa25.9■■□□□ 1.74
CLN3-219ENST00000565778 MFSD14BQ5SR56 506 aa25.9■■□□□ 1.74
CLN3-219ENST00000565778 APOBEC3FQ8IUX4 373 aaKnown RBP25.9■■□□□ 1.74
CLN3-219ENST00000565778 VGLL2Q8N8G2 317 aa25.9■■□□□ 1.74
CLN3-219ENST00000565778 MTMR14Q8NCE2 650 aa25.9■■□□□ 1.74
CLN3-219ENST00000565778 IQSEC3Q9UPP2 1182 aaPredicted RBP25.9■■□□□ 1.74
CLN3-219ENST00000565778 LRRFIP2Q9Y608 721 aaKnown RBP25.9■■□□□ 1.74
CLN3-219ENST00000565778 MYO1BO43795 1136 aa25.89■■□□□ 1.74
CLN3-219ENST00000565778 IFIT1P09914 478 aaKnown RBP25.89■■□□□ 1.74
CLN3-219ENST00000565778 TTLL12Q14166 644 aaPredicted RBP25.89■■□□□ 1.74
CLN3-219ENST00000565778 INTS3Q68E01 1043 aaKnown RBP25.89■■□□□ 1.74
CLN3-219ENST00000565778 ZIC5Q96T25 663 aa25.89■■□□□ 1.74
CLN3-219ENST00000565778 MEIS3Q99687 375 aa25.89■■□□□ 1.74
CLN3-219ENST00000565778 A0A1B0GUL6 1792 aa25.89■■□□□ 1.73
CLN3-219ENST00000565778 ZNF646O15015 1829 aaPredicted RBP25.88■■□□□ 1.73
CLN3-219ENST00000565778 FAM155AB1AL88 458 aaPredicted RBP25.88■■□□□ 1.73
CLN3-219ENST00000565778 PUM3Q15397 648 aaKnown RBP25.88■■□□□ 1.73
CLN3-219ENST00000565778 MOB2Q70IA6 237 aa25.88■■□□□ 1.73
CLN3-219ENST00000565778 PRMT6Q96LA8 375 aaPredicted RBP25.88■■□□□ 1.73
CLN3-219ENST00000565778 SIL1Q9H173 461 aa25.88■■□□□ 1.73
CLN3-219ENST00000565778 PCDHAC2Q9Y5I4 1007 aa25.88■■□□□ 1.73
CLN3-219ENST00000565778 UBE2Q2LH0YL09 131 aa25.87■■□□□ 1.73
CLN3-219ENST00000565778 GNAI3P08754 354 aa25.87■■□□□ 1.73
CLN3-219ENST00000565778 BCAMP50895 628 aa25.87■■□□□ 1.73
CLN3-219ENST00000565778 CHAF1AQ13111 956 aaPredicted RBP25.87■■□□□ 1.73
CLN3-219ENST00000565778 TTF2Q9UNY4 1162 aaKnown RBP25.87■■□□□ 1.73
CLN3-219ENST00000565778 TSKSQ9UJT2 592 aa25.86■■□□□ 1.73
CLN3-219ENST00000565778 SPDYE2BA6NHP3 402 aa25.85■■□□□ 1.73
CLN3-219ENST00000565778 CA12O43570 354 aa25.85■■□□□ 1.73
CLN3-219ENST00000565778 SPDYE6P0CI01 402 aa25.85■■□□□ 1.73
CLN3-219ENST00000565778 SLC5A1P13866 664 aa25.85■■□□□ 1.73
CLN3-219ENST00000565778 FGFR2P21802 821 aa25.85■■□□□ 1.73
CLN3-219ENST00000565778 KIF23Q02241 960 aaPredicted RBP25.85■■□□□ 1.73
CLN3-219ENST00000565778 ATF7IPQ6VMQ6 1270 aa25.85■■□□□ 1.73
CLN3-219ENST00000565778 ATG9AQ7Z3C6 839 aa25.85■■□□□ 1.73
CLN3-219ENST00000565778 CLUAP1Q96AJ1 413 aa25.85■■□□□ 1.73
CLN3-219ENST00000565778 DEFB129Q9H1M3 183 aa25.85■■□□□ 1.73
CLN3-219ENST00000565778 CEP126Q9P2H0 1117 aa25.85■■□□□ 1.73
CLN3-219ENST00000565778 FBXO3Q9UK99 471 aa25.85■■□□□ 1.73
CLN3-219ENST00000565778 CLRN2A0PK11 232 aa25.84■■□□□ 1.73
CLN3-219ENST00000565778 TRIM27P14373 513 aa25.84■■□□□ 1.73
CLN3-219ENST00000565778 PRKG1Q13976 671 aa25.84■■□□□ 1.73
CLN3-219ENST00000565778 LPIN2Q92539 896 aa25.84■■□□□ 1.73
CLN3-219ENST00000565778 CAPN15O75808 1086 aa25.83■■□□□ 1.73
CLN3-219ENST00000565778 CIAO1O76071 339 aa25.83■■□□□ 1.73
CLN3-219ENST00000565778 SLC10A3P09131 477 aa25.83■■□□□ 1.73
CLN3-219ENST00000565778 VEZTQ9HBM0 779 aa25.83■■□□□ 1.73
CLN3-219ENST00000565778 TNNQ9UQP3 1299 aa25.83■■□□□ 1.73
CLN3-219ENST00000565778 THSD7BQ9C0I4 1608 aa25.82■■□□□ 1.72
CLN3-219ENST00000565778 ARMC9Q7Z3E5 817 aa25.82■■□□□ 1.72
CLN3-219ENST00000565778 TBC1D22AQ8WUA7 517 aa25.82■■□□□ 1.72
CLN3-219ENST00000565778 SERPINA10Q9UK55 444 aa25.82■■□□□ 1.72
CLN3-219ENST00000565778 PA2G4Q9UQ80 394 aaKnown RBP25.82■■□□□ 1.72
CLN3-219ENST00000565778 IL15P40933 162 aaPredicted RBP25.8■■□□□ 1.72
CLN3-219ENST00000565778 ZKSCAN2Q63HK3 967 aa25.8■■□□□ 1.72
CLN3-219ENST00000565778 RASAL3Q86YV0 1011 aa25.8■■□□□ 1.72
CLN3-219ENST00000565778 SRGAP3O43295 1099 aa25.79■■□□□ 1.72
CLN3-219ENST00000565778 CRKP46108 304 aa25.79■■□□□ 1.72
CLN3-219ENST00000565778 GRIK5Q16478 980 aa25.79■■□□□ 1.72
CLN3-219ENST00000565778 ATP2B3Q16720 1220 aa25.79■■□□□ 1.72
CLN3-219ENST00000565778 CSRNP1Q96S65 589 aa25.79■■□□□ 1.72
CLN3-219ENST00000565778 TDRD3Q9H7E2 651 aaKnown RBP25.79■■□□□ 1.72
CLN3-219ENST00000565778 COPRSQ9NQ92 184 aa25.79■■□□□ 1.72
CLN3-219ENST00000565778 PPP2R3BQ9Y5P8 575 aa25.79■■□□□ 1.72
CLN3-219ENST00000565778 SUPT20HL1Q3ZLR7 823 aa25.78■■□□□ 1.72
CLN3-219ENST00000565778 DZIP1LQ8IYY4 767 aaKnown RBP25.78■■□□□ 1.72
CLN3-219ENST00000565778 ZNF70Q9UC06 446 aaPredicted RBP25.78■■□□□ 1.72
CLN3-219ENST00000565778 ANGEL1Q9UNK9 670 aaKnown RBP25.78■■□□□ 1.72
CLN3-219ENST00000565778 AOX1Q06278 1338 aa25.78■■□□□ 1.72
CLN3-219ENST00000565778 PAPPA2Q9BXP8 1791 aa25.77■■□□□ 1.72
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms