RNA–Protein interactions for RNA: ENST00000564468.5

CLK3-216, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 929 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-216ENST00000564468 ITPRIPQ8IWB1 547 aa16.66■□□□□ 0.26
CLK3-216ENST00000564468 VGLL2Q8N8G2 317 aa16.66■□□□□ 0.26
CLK3-216ENST00000564468 DCPSQ96C86 337 aaKnown RBP16.66■□□□□ 0.26
CLK3-216ENST00000564468 COPRSQ9NQ92 184 aa16.66■□□□□ 0.26
CLK3-216ENST00000564468 CEP126Q9P2H0 1117 aa16.66■□□□□ 0.26
CLK3-216ENST00000564468 RCAN3Q9UKA8 241 aa16.66■□□□□ 0.26
CLK3-216ENST00000564468 HSPA8P11142 646 aaKnown RBP16.65■□□□□ 0.26
CLK3-216ENST00000564468 SLC5A1P13866 664 aa16.65■□□□□ 0.26
CLK3-216ENST00000564468 PAXIP1Q6ZW49 1069 aaPredicted RBP16.65■□□□□ 0.26
CLK3-216ENST00000564468 FAM84BQ96KN1 310 aaPredicted RBP16.65■□□□□ 0.26
CLK3-216ENST00000564468 SIL1Q9H173 461 aa16.65■□□□□ 0.26
CLK3-216ENST00000564468 MYOZ2Q9NPC6 264 aa16.65■□□□□ 0.26
CLK3-216ENST00000564468 SLC34A2O95436 690 aa16.64■□□□□ 0.25
CLK3-216ENST00000564468 GYG1P46976 350 aa16.64■□□□□ 0.25
CLK3-216ENST00000564468 ATG9AQ7Z3C6 839 aa16.64■□□□□ 0.25
CLK3-216ENST00000564468 TDRD7Q8NHU6 1098 aaKnown RBP16.64■□□□□ 0.25
CLK3-216ENST00000564468 LPIN2Q92539 896 aa16.64■□□□□ 0.25
CLK3-216ENST00000564468 ECM29Q5VYK3 1845 aa16.63■□□□□ 0.25
CLK3-216ENST00000564468 FRAT2O75474 233 aaPredicted RBP16.63■□□□□ 0.25
CLK3-216ENST00000564468 FBXO33Q7Z6M2 555 aa16.63■□□□□ 0.25
CLK3-216ENST00000564468 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.63■□□□□ 0.25
CLK3-216ENST00000564468 FAM205AQ6ZU69 1335 aa16.63■□□□□ 0.25
CLK3-216ENST00000564468 ARAP2Q8WZ64 1704 aa16.62■□□□□ 0.25
CLK3-216ENST00000564468 EGFRP00533 1210 aa16.62■□□□□ 0.25
CLK3-216ENST00000564468 FGFR2P21802 821 aa16.62■□□□□ 0.25
CLK3-216ENST00000564468 MLLT1Q03111 559 aaPredicted RBP16.62■□□□□ 0.25
CLK3-216ENST00000564468 SCARF1Q14162 830 aa16.62■□□□□ 0.25
CLK3-216ENST00000564468 KRT26Q7Z3Y9 468 aa16.62■□□□□ 0.25
CLK3-216ENST00000564468 KIAA0825Q8IV33 1275 aa16.62■□□□□ 0.25
CLK3-216ENST00000564468 SULF1Q8IWU6 871 aa16.62■□□□□ 0.25
CLK3-216ENST00000564468 MXD3Q9BW11 206 aa16.62■□□□□ 0.25
CLK3-216ENST00000564468 GLIS2Q9BZE0 524 aaPredicted RBP16.62■□□□□ 0.25
CLK3-216ENST00000564468 CHMP4BQ9H444 224 aaKnown RBP16.62■□□□□ 0.25
CLK3-216ENST00000564468 PA2G4Q9UQ80 394 aaKnown RBP16.62■□□□□ 0.25
CLK3-216ENST00000564468 CCDC85CA6NKD9 419 aa16.61■□□□□ 0.25
CLK3-216ENST00000564468 ZBTB7BO15156 539 aaPredicted RBP16.61■□□□□ 0.25
CLK3-216ENST00000564468 RLBP1P12271 317 aa16.61■□□□□ 0.25
CLK3-216ENST00000564468 ATP2B3Q16720 1220 aa16.61■□□□□ 0.25
CLK3-216ENST00000564468 TBC1D22AQ8WUA7 517 aa16.61■□□□□ 0.25
CLK3-216ENST00000564468 CAPNS2Q96L46 248 aa16.61■□□□□ 0.25
CLK3-216ENST00000564468 GGA3Q9NZ52 723 aa16.61■□□□□ 0.25
CLK3-216ENST00000564468 AKAP2Q9Y2D5 859 aa16.61■□□□□ 0.25
CLK3-216ENST00000564468 PITPNM2Q9BZ72 1349 aa16.61■□□□□ 0.25
CLK3-216ENST00000564468 TRAF5O00463 557 aa16.6■□□□□ 0.25
CLK3-216ENST00000564468 G3BP1Q13283 466 aaKnown RBP eCLIP16.6■□□□□ 0.25
CLK3-216ENST00000564468 USP48Q86UV5 1035 aa16.6■□□□□ 0.25
CLK3-216ENST00000564468 GNL3LQ9NVN8 582 aaKnown RBP16.6■□□□□ 0.25
CLK3-216ENST00000564468 CA12O43570 354 aa16.59■□□□□ 0.25
CLK3-216ENST00000564468 CELF2O95319 508 aaKnown RBP16.59■□□□□ 0.25
CLK3-216ENST00000564468 MAP2K2P36507 400 aa16.59■□□□□ 0.25
CLK3-216ENST00000564468 ATP8B2P98198 1209 aa16.59■□□□□ 0.25
CLK3-216ENST00000564468 GRM1Q13255 1194 aa16.59■□□□□ 0.25
CLK3-216ENST00000564468 DLGAP5Q15398 846 aa16.59■□□□□ 0.25
CLK3-216ENST00000564468 MFSD14BQ5SR56 506 aa16.59■□□□□ 0.25
CLK3-216ENST00000564468 ANGEL2Q5VTE6 544 aaKnown RBP16.59■□□□□ 0.25
CLK3-216ENST00000564468 PANK1Q8TE04 598 aa16.59■□□□□ 0.25
CLK3-216ENST00000564468 DDX19BQ9UMR2 479 aa16.59■□□□□ 0.25
CLK3-216ENST00000564468 PNMA6EA0A0J9YXQ4 647 aa16.58■□□□□ 0.24
CLK3-216ENST00000564468 WNT10BO00744 389 aa16.58■□□□□ 0.24
CLK3-216ENST00000564468 BCAMP50895 628 aa16.58■□□□□ 0.24
CLK3-216ENST00000564468 CERS5Q8N5B7 392 aa16.58■□□□□ 0.24
CLK3-216ENST00000564468 MTMR14Q8NCE2 650 aa16.58■□□□□ 0.24
CLK3-216ENST00000564468 MYO1BO43795 1136 aa16.57■□□□□ 0.24
CLK3-216ENST00000564468 FMR1Q06787 632 aaKnown RBP eCLIP16.57■□□□□ 0.24
CLK3-216ENST00000564468 CHAF1AQ13111 956 aaPredicted RBP16.57■□□□□ 0.24
CLK3-216ENST00000564468 MVPQ14764 893 aaKnown RBP16.57■□□□□ 0.24
CLK3-216ENST00000564468 NBPF9Q3BBW0 867 aa16.57■□□□□ 0.24
CLK3-216ENST00000564468 CST9Q5W186 159 aa16.57■□□□□ 0.24
CLK3-216ENST00000564468 SSH3Q8TE77 659 aa16.57■□□□□ 0.24
CLK3-216ENST00000564468 ZNF408Q9H9D4 720 aa16.57■□□□□ 0.24
CLK3-216ENST00000564468 IQSEC3Q9UPP2 1182 aaPredicted RBP16.57■□□□□ 0.24
CLK3-216ENST00000564468 JAG2Q9Y219 1238 aa16.57■□□□□ 0.24
CLK3-216ENST00000564468 F8W031 263 aaPredicted RBP16.56■□□□□ 0.24
CLK3-216ENST00000564468 SEMA3EO15041 775 aa16.56■□□□□ 0.24
CLK3-216ENST00000564468 RGS19P49795 217 aa16.56■□□□□ 0.24
CLK3-216ENST00000564468 POLA2Q14181 598 aa16.56■□□□□ 0.24
CLK3-216ENST00000564468 PDE3AQ14432 1141 aa16.56■□□□□ 0.24
CLK3-216ENST00000564468 CYP4F22Q6NT55 531 aa16.56■□□□□ 0.24
CLK3-216ENST00000564468 APOBEC3FQ8IUX4 373 aaKnown RBP16.56■□□□□ 0.24
CLK3-216ENST00000564468 WDR66Q8TBY9 1149 aa16.56■□□□□ 0.24
CLK3-216ENST00000564468 SUGT1Q9Y2Z0 365 aa16.56■□□□□ 0.24
CLK3-216ENST00000564468 TLL2Q9Y6L7 1015 aa16.56■□□□□ 0.24
CLK3-216ENST00000564468 MAST3O60307 1309 aa16.55■□□□□ 0.24
CLK3-216ENST00000564468 ADM5C9JUS6 153 aa16.55■□□□□ 0.24
CLK3-216ENST00000564468 ZBTB22O15209 634 aa16.55■□□□□ 0.24
CLK3-216ENST00000564468 RBM5P52756 815 aaKnown RBP eCLIP16.55■□□□□ 0.24
CLK3-216ENST00000564468 TFCP2Q12800 502 aa16.55■□□□□ 0.24
CLK3-216ENST00000564468 OS9Q13438 667 aaPredicted RBP16.55■□□□□ 0.24
CLK3-216ENST00000564468 CFAP100Q494V2 611 aa16.55■□□□□ 0.24
CLK3-216ENST00000564468 C2orf69Q8N8R5 385 aa16.55■□□□□ 0.24
CLK3-216ENST00000564468 ZBED3Q96IU2 234 aaPredicted RBP16.55■□□□□ 0.24
CLK3-216ENST00000564468 HHIPL1Q96JK4 782 aa16.55■□□□□ 0.24
CLK3-216ENST00000564468 C1orf115Q9H7X2 142 aa16.55■□□□□ 0.24
CLK3-216ENST00000564468 PCDH10Q9P2E7 1040 aa16.55■□□□□ 0.24
CLK3-216ENST00000564468 SERPINA10Q9UK55 444 aa16.55■□□□□ 0.24
CLK3-216ENST00000564468 TTF2Q9UNY4 1162 aaKnown RBP16.55■□□□□ 0.24
CLK3-216ENST00000564468 ASTN2O75129 1339 aaPredicted RBP16.54■□□□□ 0.24
CLK3-216ENST00000564468 A0A1B0GUL7 405 aa16.54■□□□□ 0.24
CLK3-216ENST00000564468 HDLBPQ00341 1268 aaKnown RBP16.54■□□□□ 0.24
CLK3-216ENST00000564468 DENND2AQ9ULE3 1009 aa16.54■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms