RNA–Protein interactions for RNA: ENST00000563842.5

CLK3-213, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 860 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-213ENST00000563842 FAM205AQ6ZU69 1335 aa16.63■□□□□ 0.25
CLK3-213ENST00000563842 ARAP2Q8WZ64 1704 aa16.62■□□□□ 0.25
CLK3-213ENST00000563842 EGFRP00533 1210 aa16.62■□□□□ 0.25
CLK3-213ENST00000563842 FGFR2P21802 821 aa16.62■□□□□ 0.25
CLK3-213ENST00000563842 SCARF1Q14162 830 aa16.62■□□□□ 0.25
CLK3-213ENST00000563842 KRT26Q7Z3Y9 468 aa16.62■□□□□ 0.25
CLK3-213ENST00000563842 KIAA0825Q8IV33 1275 aa16.62■□□□□ 0.25
CLK3-213ENST00000563842 SULF1Q8IWU6 871 aa16.62■□□□□ 0.25
CLK3-213ENST00000563842 MXD3Q9BW11 206 aa16.62■□□□□ 0.25
CLK3-213ENST00000563842 GLIS2Q9BZE0 524 aaPredicted RBP16.62■□□□□ 0.25
CLK3-213ENST00000563842 CHMP4BQ9H444 224 aaKnown RBP16.62■□□□□ 0.25
CLK3-213ENST00000563842 PA2G4Q9UQ80 394 aaKnown RBP16.62■□□□□ 0.25
CLK3-213ENST00000563842 ZBTB7BO15156 539 aaPredicted RBP16.61■□□□□ 0.25
CLK3-213ENST00000563842 RLBP1P12271 317 aa16.61■□□□□ 0.25
CLK3-213ENST00000563842 ATP2B3Q16720 1220 aa16.61■□□□□ 0.25
CLK3-213ENST00000563842 TBC1D22AQ8WUA7 517 aa16.61■□□□□ 0.25
CLK3-213ENST00000563842 GGA3Q9NZ52 723 aa16.61■□□□□ 0.25
CLK3-213ENST00000563842 AKAP2Q9Y2D5 859 aa16.61■□□□□ 0.25
CLK3-213ENST00000563842 PITPNM2Q9BZ72 1349 aa16.61■□□□□ 0.25
CLK3-213ENST00000563842 TRAF5O00463 557 aa16.6■□□□□ 0.25
CLK3-213ENST00000563842 G3BP1Q13283 466 aaKnown RBP eCLIP16.6■□□□□ 0.25
CLK3-213ENST00000563842 USP48Q86UV5 1035 aa16.6■□□□□ 0.25
CLK3-213ENST00000563842 GNL3LQ9NVN8 582 aaKnown RBP16.6■□□□□ 0.25
CLK3-213ENST00000563842 ABT1Q9ULW3 272 aaKnown RBP16.6■□□□□ 0.25
CLK3-213ENST00000563842 CELF2O95319 508 aaKnown RBP16.59■□□□□ 0.25
CLK3-213ENST00000563842 ATP8B2P98198 1209 aa16.59■□□□□ 0.25
CLK3-213ENST00000563842 DLGAP5Q15398 846 aa16.59■□□□□ 0.25
CLK3-213ENST00000563842 DEFB115Q30KQ5 88 aa16.59■□□□□ 0.25
CLK3-213ENST00000563842 MFSD14BQ5SR56 506 aa16.59■□□□□ 0.25
CLK3-213ENST00000563842 ANGEL2Q5VTE6 544 aaKnown RBP16.59■□□□□ 0.25
CLK3-213ENST00000563842 PANK1Q8TE04 598 aa16.59■□□□□ 0.25
CLK3-213ENST00000563842 DDX19BQ9UMR2 479 aa16.59■□□□□ 0.25
CLK3-213ENST00000563842 PNMA6EA0A0J9YXQ4 647 aa16.58■□□□□ 0.24
CLK3-213ENST00000563842 WNT10BO00744 389 aa16.58■□□□□ 0.24
CLK3-213ENST00000563842 BCAMP50895 628 aa16.58■□□□□ 0.24
CLK3-213ENST00000563842 CERS5Q8N5B7 392 aa16.58■□□□□ 0.24
CLK3-213ENST00000563842 MTMR14Q8NCE2 650 aa16.58■□□□□ 0.24
CLK3-213ENST00000563842 MKRN1Q9UHC7 482 aaKnown RBP16.58■□□□□ 0.24
CLK3-213ENST00000563842 CNTNAP1P78357 1384 aa16.58■□□□□ 0.24
CLK3-213ENST00000563842 PCNTO95613 3336 aa16.58■□□□□ 0.24
CLK3-213ENST00000563842 RASSF10A6NK89 507 aa16.57■□□□□ 0.24
CLK3-213ENST00000563842 MYO1BO43795 1136 aa16.57■□□□□ 0.24
CLK3-213ENST00000563842 FMR1Q06787 632 aaKnown RBP eCLIP16.57■□□□□ 0.24
CLK3-213ENST00000563842 CHAF1AQ13111 956 aaPredicted RBP16.57■□□□□ 0.24
CLK3-213ENST00000563842 MVPQ14764 893 aaKnown RBP16.57■□□□□ 0.24
CLK3-213ENST00000563842 NBPF9Q3BBW0 867 aa16.57■□□□□ 0.24
CLK3-213ENST00000563842 CST9Q5W186 159 aa16.57■□□□□ 0.24
CLK3-213ENST00000563842 SSH3Q8TE77 659 aa16.57■□□□□ 0.24
CLK3-213ENST00000563842 ZNF408Q9H9D4 720 aa16.57■□□□□ 0.24
CLK3-213ENST00000563842 IQSEC3Q9UPP2 1182 aaPredicted RBP16.57■□□□□ 0.24
CLK3-213ENST00000563842 JAG2Q9Y219 1238 aa16.57■□□□□ 0.24
CLK3-213ENST00000563842 F8W031 263 aaPredicted RBP16.56■□□□□ 0.24
CLK3-213ENST00000563842 SEMA3EO15041 775 aa16.56■□□□□ 0.24
CLK3-213ENST00000563842 POLA2Q14181 598 aa16.56■□□□□ 0.24
CLK3-213ENST00000563842 PDE3AQ14432 1141 aa16.56■□□□□ 0.24
CLK3-213ENST00000563842 APOBEC3FQ8IUX4 373 aaKnown RBP16.56■□□□□ 0.24
CLK3-213ENST00000563842 WDR66Q8TBY9 1149 aa16.56■□□□□ 0.24
CLK3-213ENST00000563842 SUGT1Q9Y2Z0 365 aa16.56■□□□□ 0.24
CLK3-213ENST00000563842 TLL2Q9Y6L7 1015 aa16.56■□□□□ 0.24
CLK3-213ENST00000563842 MAST3O60307 1309 aa16.55■□□□□ 0.24
CLK3-213ENST00000563842 ADM5C9JUS6 153 aa16.55■□□□□ 0.24
CLK3-213ENST00000563842 ZBTB22O15209 634 aa16.55■□□□□ 0.24
CLK3-213ENST00000563842 ECE1P42892 770 aa16.55■□□□□ 0.24
CLK3-213ENST00000563842 RBM5P52756 815 aaKnown RBP eCLIP16.55■□□□□ 0.24
CLK3-213ENST00000563842 TFCP2Q12800 502 aa16.55■□□□□ 0.24
CLK3-213ENST00000563842 OS9Q13438 667 aaPredicted RBP16.55■□□□□ 0.24
CLK3-213ENST00000563842 CFAP100Q494V2 611 aa16.55■□□□□ 0.24
CLK3-213ENST00000563842 C2orf69Q8N8R5 385 aa16.55■□□□□ 0.24
CLK3-213ENST00000563842 ZBED3Q96IU2 234 aaPredicted RBP16.55■□□□□ 0.24
CLK3-213ENST00000563842 HHIPL1Q96JK4 782 aa16.55■□□□□ 0.24
CLK3-213ENST00000563842 C1orf115Q9H7X2 142 aa16.55■□□□□ 0.24
CLK3-213ENST00000563842 SERPINA10Q9UK55 444 aa16.55■□□□□ 0.24
CLK3-213ENST00000563842 TTF2Q9UNY4 1162 aaKnown RBP16.55■□□□□ 0.24
CLK3-213ENST00000563842 ASTN2O75129 1339 aaPredicted RBP16.54■□□□□ 0.24
CLK3-213ENST00000563842 A0A1B0GUL7 405 aa16.54■□□□□ 0.24
CLK3-213ENST00000563842 HDLBPQ00341 1268 aaKnown RBP16.54■□□□□ 0.24
CLK3-213ENST00000563842 DENND2AQ9ULE3 1009 aa16.54■□□□□ 0.24
CLK3-213ENST00000563842 COG6Q9Y2V7 657 aa16.54■□□□□ 0.24
CLK3-213ENST00000563842 SURF6O75683 361 aaKnown RBP16.53■□□□□ 0.24
CLK3-213ENST00000563842 NF2P35240 595 aa16.53■□□□□ 0.24
CLK3-213ENST00000563842 TIMM10P62072 90 aa16.53■□□□□ 0.24
CLK3-213ENST00000563842 PAXIP1Q6ZW49 1069 aaPredicted RBP16.53■□□□□ 0.24
CLK3-213ENST00000563842 SAPCD2Q86UD0 394 aa16.53■□□□□ 0.24
CLK3-213ENST00000563842 CDCA5Q96FF9 252 aa16.53■□□□□ 0.24
CLK3-213ENST00000563842 YTHDC1Q96MU7 727 aaKnown RBP16.53■□□□□ 0.24
CLK3-213ENST00000563842 NEUROD6Q96NK8 337 aa16.53■□□□□ 0.24
CLK3-213ENST00000563842 MRIQ9BWK5 157 aa16.53■□□□□ 0.24
CLK3-213ENST00000563842 GBA2Q9HCG7 927 aaPredicted RBP16.53■□□□□ 0.24
CLK3-213ENST00000563842 SPDYE2BA6NHP3 402 aa16.52■□□□□ 0.24
CLK3-213ENST00000563842 SPDYE6P0CI01 402 aa16.52■□□□□ 0.24
CLK3-213ENST00000563842 VEGFBP49765 207 aa16.52■□□□□ 0.24
CLK3-213ENST00000563842 FKBP1BP68106 108 aa16.52■□□□□ 0.24
CLK3-213ENST00000563842 GORABQ5T7V8 394 aa16.52■□□□□ 0.24
CLK3-213ENST00000563842 CCDC102BQ68D86 513 aa16.52■□□□□ 0.24
CLK3-213ENST00000563842 CEP85Q6P2H3 762 aa16.52■□□□□ 0.24
CLK3-213ENST00000563842 RPAP2Q8IXW5 612 aaPredicted RBP16.52■□□□□ 0.24
CLK3-213ENST00000563842 ZGPATQ8N5A5 531 aaKnown RBP16.52■□□□□ 0.24
CLK3-213ENST00000563842 XAGE2Q96GT9 111 aa16.52■□□□□ 0.24
CLK3-213ENST00000563842 GPR108Q9NPR9 543 aa16.52■□□□□ 0.24
CLK3-213ENST00000563842 NOP58Q9Y2X3 529 aaKnown RBP16.52■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms