RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 TRMT2AQ8IZ69 625 aaKnown RBP12.87□□□□□ -0.35
LDLR-214ENST00000560628 USP44Q9H0E7 712 aa12.87□□□□□ -0.35
LDLR-214ENST00000560628 PSME4Q14997 1843 aa12.87□□□□□ -0.35
LDLR-214ENST00000560628 SLC10A3P09131 477 aa12.86□□□□□ -0.35
LDLR-214ENST00000560628 HIBADHP31937 336 aaKnown RBP12.86□□□□□ -0.35
LDLR-214ENST00000560628 FKBP1BP68106 108 aa12.86□□□□□ -0.35
LDLR-214ENST00000560628 UBE4AQ14139 1066 aa12.86□□□□□ -0.35
LDLR-214ENST00000560628 ALDH1L2Q3SY69 923 aa12.86□□□□□ -0.35
LDLR-214ENST00000560628 RABL6Q3YEC7 729 aaPredicted RBP12.86□□□□□ -0.35
LDLR-214ENST00000560628 KLHDC4Q8TBB5 520 aa12.86□□□□□ -0.35
LDLR-214ENST00000560628 ZBED3Q96IU2 234 aaPredicted RBP12.86□□□□□ -0.35
LDLR-214ENST00000560628 FAM84BQ96KN1 310 aaPredicted RBP12.86□□□□□ -0.35
LDLR-214ENST00000560628 CSRNP1Q96S65 589 aa12.86□□□□□ -0.35
LDLR-214ENST00000560628 THSD7BQ9C0I4 1608 aa12.85□□□□□ -0.35
LDLR-214ENST00000560628 CCER2I3L3R5 266 aa12.85□□□□□ -0.35
LDLR-214ENST00000560628 TRPA1O75762 1119 aa12.85□□□□□ -0.35
LDLR-214ENST00000560628 NF2P35240 595 aa12.85□□□□□ -0.35
LDLR-214ENST00000560628 CFAP100Q494V2 611 aa12.85□□□□□ -0.35
LDLR-214ENST00000560628 METTL24Q5JXM2 366 aa12.85□□□□□ -0.35
LDLR-214ENST00000560628 RASAL3Q86YV0 1011 aa12.85□□□□□ -0.35
LDLR-214ENST00000560628 APOBEC3FQ8IUX4 373 aaKnown RBP12.85□□□□□ -0.35
LDLR-214ENST00000560628 TDRD7Q8NHU6 1098 aaKnown RBP12.85□□□□□ -0.35
LDLR-214ENST00000560628 ABHD8Q96I13 439 aa12.85□□□□□ -0.35
LDLR-214ENST00000560628 PRMT6Q96LA8 375 aaPredicted RBP12.85□□□□□ -0.35
LDLR-214ENST00000560628 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.85□□□□□ -0.35
LDLR-214ENST00000560628 NOB1Q9ULX3 412 aaKnown RBP12.85□□□□□ -0.35
LDLR-214ENST00000560628 CLRN2A0PK11 232 aa12.84□□□□□ -0.35
LDLR-214ENST00000560628 RBM5P52756 815 aaKnown RBP eCLIP12.84□□□□□ -0.35
LDLR-214ENST00000560628 FKBP1AP62942 108 aaKnown RBP12.84□□□□□ -0.35
LDLR-214ENST00000560628 DEFB129Q9H1M3 183 aa12.84□□□□□ -0.35
LDLR-214ENST00000560628 RNF186Q9NXI6 227 aa12.84□□□□□ -0.35
LDLR-214ENST00000560628 FZD1Q9UP38 647 aa12.84□□□□□ -0.35
LDLR-214ENST00000560628 IQSEC3Q9UPP2 1182 aaPredicted RBP12.84□□□□□ -0.35
LDLR-214ENST00000560628 AOX1Q06278 1338 aa12.84□□□□□ -0.35
LDLR-214ENST00000560628 MROH5Q6ZUA9 1318 aa12.84□□□□□ -0.35
LDLR-214ENST00000560628 PTPN12Q05209 780 aaKnown RBP12.83□□□□□ -0.36
LDLR-214ENST00000560628 MKRN3Q13064 507 aaKnown RBP12.83□□□□□ -0.36
LDLR-214ENST00000560628 MFSD14BQ5SR56 506 aa12.83□□□□□ -0.36
LDLR-214ENST00000560628 VPS37DQ86XT2 251 aa12.83□□□□□ -0.36
LDLR-214ENST00000560628 MTMR14Q8NCE2 650 aa12.83□□□□□ -0.36
LDLR-214ENST00000560628 FAM205AQ6ZU69 1335 aa12.83□□□□□ -0.36
LDLR-214ENST00000560628 SPDYE2BA6NHP3 402 aa12.82□□□□□ -0.36
LDLR-214ENST00000560628 MYO1BO43795 1136 aa12.82□□□□□ -0.36
LDLR-214ENST00000560628 PDE8BO95263 885 aa12.82□□□□□ -0.36
LDLR-214ENST00000560628 SPDYE6P0CI01 402 aa12.82□□□□□ -0.36
LDLR-214ENST00000560628 CHAF1AQ13111 956 aaPredicted RBP12.82□□□□□ -0.36
LDLR-214ENST00000560628 ARMC9Q7Z3E5 817 aa12.82□□□□□ -0.36
LDLR-214ENST00000560628 FBXO33Q7Z6M2 555 aa12.82□□□□□ -0.36
LDLR-214ENST00000560628 VEZTQ9HBM0 779 aa12.82□□□□□ -0.36
LDLR-214ENST00000560628 ANGEL1Q9UNK9 670 aaKnown RBP12.82□□□□□ -0.36
LDLR-214ENST00000560628 TTF2Q9UNY4 1162 aaKnown RBP12.82□□□□□ -0.36
LDLR-214ENST00000560628 ZNF646O15015 1829 aaPredicted RBP12.82□□□□□ -0.36
LDLR-214ENST00000560628 CCDC85CA6NKD9 419 aa12.81□□□□□ -0.36
LDLR-214ENST00000560628 FRAT2O75474 233 aaPredicted RBP12.81□□□□□ -0.36
LDLR-214ENST00000560628 RFX5P48382 616 aaPredicted RBP12.81□□□□□ -0.36
LDLR-214ENST00000560628 BCAMP50895 628 aa12.81□□□□□ -0.36
LDLR-214ENST00000560628 GRIK5Q16478 980 aa12.81□□□□□ -0.36
LDLR-214ENST00000560628 CAVIN4Q5BKX8 364 aa12.81□□□□□ -0.36
LDLR-214ENST00000560628 VGLL2Q8N8G2 317 aa12.81□□□□□ -0.36
LDLR-214ENST00000560628 MCOLN1Q9GZU1 580 aa12.81□□□□□ -0.36
LDLR-214ENST00000560628 CASP8AP2Q9UKL3 1982 aa12.81□□□□□ -0.36
LDLR-214ENST00000560628 CT47B1P0C2W7 299 aaPredicted RBP12.8□□□□□ -0.36
LDLR-214ENST00000560628 UBTFL1P0CB47 393 aaPredicted RBP12.8□□□□□ -0.36
LDLR-214ENST00000560628 RARSP54136 660 aaKnown RBP12.8□□□□□ -0.36
LDLR-214ENST00000560628 DGKZQ13574 1117 aa12.8□□□□□ -0.36
LDLR-214ENST00000560628 NBPF12Q5TAG4 269 aaPredicted RBP12.8□□□□□ -0.36
LDLR-214ENST00000560628 API5Q9BZZ5 524 aaKnown RBP12.8□□□□□ -0.36
LDLR-214ENST00000560628 TDRD3Q9H7E2 651 aaKnown RBP12.8□□□□□ -0.36
LDLR-214ENST00000560628 SAGE1Q9NXZ1 904 aa12.8□□□□□ -0.36
LDLR-214ENST00000560628 PAPPA2Q9BXP8 1791 aa12.79□□□□□ -0.36
LDLR-214ENST00000560628 EYA2O00167 538 aa12.79□□□□□ -0.36
LDLR-214ENST00000560628 RASA3Q14644 834 aa12.79□□□□□ -0.36
LDLR-214ENST00000560628 LDLRAD1Q5T700 205 aa12.79□□□□□ -0.36
LDLR-214ENST00000560628 REM2Q8IYK8 340 aaPredicted RBP12.79□□□□□ -0.36
LDLR-214ENST00000560628 SLC10A4Q96EP9 437 aa12.79□□□□□ -0.36
LDLR-214ENST00000560628 SIL1Q9H173 461 aa12.79□□□□□ -0.36
LDLR-214ENST00000560628 ZNF70Q9UC06 446 aaPredicted RBP12.79□□□□□ -0.36
LDLR-214ENST00000560628 PPP1R12BO60237 982 aaPredicted RBP12.78□□□□□ -0.36
LDLR-214ENST00000560628 TBC1D8O95759 1140 aa12.78□□□□□ -0.36
LDLR-214ENST00000560628 IFIT1P09914 478 aaKnown RBP12.78□□□□□ -0.36
LDLR-214ENST00000560628 FGFR2P21802 821 aa12.78□□□□□ -0.36
LDLR-214ENST00000560628 CRKP46108 304 aa12.78□□□□□ -0.36
LDLR-214ENST00000560628 PUM3Q15397 648 aaKnown RBP12.78□□□□□ -0.36
LDLR-214ENST00000560628 SUPT20HL1Q3ZLR7 823 aa12.78□□□□□ -0.36
LDLR-214ENST00000560628 ATG9AQ7Z3C6 839 aa12.78□□□□□ -0.36
LDLR-214ENST00000560628 DZIP1LQ8IYY4 767 aaKnown RBP12.78□□□□□ -0.36
LDLR-214ENST00000560628 CLMNQ96JQ2 1002 aa12.78□□□□□ -0.36
LDLR-214ENST00000560628 SERPINA10Q9UK55 444 aa12.78□□□□□ -0.36
LDLR-214ENST00000560628 PPP2R3BQ9Y5P8 575 aa12.78□□□□□ -0.36
LDLR-214ENST00000560628 LRRFIP2Q9Y608 721 aaKnown RBP12.78□□□□□ -0.36
LDLR-214ENST00000560628 A0A1B0GUL6 1792 aa12.78□□□□□ -0.36
LDLR-214ENST00000560628 TCP10L2B9ZVM9 353 aa12.77□□□□□ -0.37
LDLR-214ENST00000560628 SLC5A1P13866 664 aa12.77□□□□□ -0.37
LDLR-214ENST00000560628 TM4SF4P48230 202 aa12.77□□□□□ -0.37
LDLR-214ENST00000560628 SPDYE2Q495Y8 402 aa12.77□□□□□ -0.37
LDLR-214ENST00000560628 SPRYD7Q5W111 196 aa12.77□□□□□ -0.37
LDLR-214ENST00000560628 MEIS3Q99687 375 aa12.77□□□□□ -0.37
LDLR-214ENST00000560628 PA2G4Q9UQ80 394 aaKnown RBP12.77□□□□□ -0.37
LDLR-214ENST00000560628 USP2O75604 605 aaPredicted RBP12.76□□□□□ -0.37
LDLR-214ENST00000560628 CDAN1Q8IWY9 1227 aa12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms