RNA–Protein interactions for RNA: ENST00000560213.1

LRRC28-217, Transcript of leucine rich repeat containing 28, humanhuman

TSL 4

Gene LRRC28, Length 552 nt, Biotype retained intron, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-217ENST00000560213 JAG2Q9Y219 1238 aa20.08■□□□□ 0.81
LRRC28-217ENST00000560213 FAM205AQ6ZU69 1335 aa20.07■□□□□ 0.8
LRRC28-217ENST00000560213 MYO3BQ8WXR4 1341 aa20.07■□□□□ 0.8
LRRC28-217ENST00000560213 CHAF1AQ13111 956 aaPredicted RBP20.07■□□□□ 0.8
LRRC28-217ENST00000560213 HDAC1Q13547 482 aaPredicted RBP20.07■□□□□ 0.8
LRRC28-217ENST00000560213 AACSQ86V21 672 aa20.07■□□□□ 0.8
LRRC28-217ENST00000560213 C16orf71Q8IYS4 520 aaPredicted RBP20.07■□□□□ 0.8
LRRC28-217ENST00000560213 MXD3Q9BW11 206 aa20.07■□□□□ 0.8
LRRC28-217ENST00000560213 LRRCC1Q9C099 1032 aa20.07■□□□□ 0.8
LRRC28-217ENST00000560213 RWDD1Q9H446 243 aaPredicted RBP20.07■□□□□ 0.8
LRRC28-217ENST00000560213 H7C1D1 291 aa20.06■□□□□ 0.8
LRRC28-217ENST00000560213 EPHX2P34913 555 aa20.06■□□□□ 0.8
LRRC28-217ENST00000560213 EPS15P42566 896 aa20.06■□□□□ 0.8
LRRC28-217ENST00000560213 CCDC158Q5M9N0 1113 aa20.06■□□□□ 0.8
LRRC28-217ENST00000560213 DBNDD2Q9BQY9 259 aa20.06■□□□□ 0.8
LRRC28-217ENST00000560213 TAF1DQ9H5J8 278 aaPredicted RBP20.06■□□□□ 0.8
LRRC28-217ENST00000560213 MYH13Q9UKX3 1938 aa20.06■□□□□ 0.8
LRRC28-217ENST00000560213 KIF3CO14782 793 aa20.05■□□□□ 0.8
LRRC28-217ENST00000560213 SEMA3EO15041 775 aa20.05■□□□□ 0.8
LRRC28-217ENST00000560213 FKBP1AP62942 108 aaKnown RBP20.05■□□□□ 0.8
LRRC28-217ENST00000560213 MICALL2Q8IY33 904 aa20.05■□□□□ 0.8
LRRC28-217ENST00000560213 DENND2AQ9ULE3 1009 aa20.05■□□□□ 0.8
LRRC28-217ENST00000560213 IFIT2P09913 472 aaKnown RBP20.04■□□□□ 0.8
LRRC28-217ENST00000560213 USP17L8P0C7I0 530 aa20.04■□□□□ 0.8
LRRC28-217ENST00000560213 MFSD14BQ5SR56 506 aa20.04■□□□□ 0.8
LRRC28-217ENST00000560213 TTC39AQ5SRH9 613 aa20.04■□□□□ 0.8
LRRC28-217ENST00000560213 TBC1D22AQ8WUA7 517 aa20.04■□□□□ 0.8
LRRC28-217ENST00000560213 GMLQ99445 158 aa20.04■□□□□ 0.8
LRRC28-217ENST00000560213 DBNLQ9UJU6 430 aaKnown RBP20.04■□□□□ 0.8
LRRC28-217ENST00000560213 NEFLP07196 543 aa20.03■□□□□ 0.8
LRRC28-217ENST00000560213 UQCRFS1P1P0C7P4 283 aa20.03■□□□□ 0.8
LRRC28-217ENST00000560213 EAPPQ56P03 285 aaPredicted RBP20.03■□□□□ 0.8
LRRC28-217ENST00000560213 PNMA8AQ86V59 439 aaPredicted RBP20.03■□□□□ 0.8
LRRC28-217ENST00000560213 OGFOD1Q8N543 542 aa20.03■□□□□ 0.8
LRRC28-217ENST00000560213 WDR66Q8TBY9 1149 aa20.03■□□□□ 0.8
LRRC28-217ENST00000560213 GCC1Q96CN9 775 aa20.03■□□□□ 0.8
LRRC28-217ENST00000560213 ADARB2Q9NS39 739 aaKnown RBP20.03■□□□□ 0.8
LRRC28-217ENST00000560213 ZNF646O15015 1829 aaPredicted RBP20.03■□□□□ 0.8
LRRC28-217ENST00000560213 SHTN1A0MZ66 631 aa20.02■□□□□ 0.8
LRRC28-217ENST00000560213 SMARCA5O60264 1052 aaPredicted RBP20.02■□□□□ 0.8
LRRC28-217ENST00000560213 KIAA0825Q8IV33 1275 aa20.02■□□□□ 0.8
LRRC28-217ENST00000560213 CERS5Q8N5B7 392 aa20.02■□□□□ 0.8
LRRC28-217ENST00000560213 TLR7Q9NYK1 1049 aaKnown RBP20.02■□□□□ 0.8
LRRC28-217ENST00000560213 ZBTB47Q9UFB7 747 aaPredicted RBP20.02■□□□□ 0.8
LRRC28-217ENST00000560213 HDAC9Q9UKV0 1011 aa20.02■□□□□ 0.8
LRRC28-217ENST00000560213 F8W031 263 aaPredicted RBP20.01■□□□□ 0.79
LRRC28-217ENST00000560213 ZBTB22O15209 634 aa20.01■□□□□ 0.79
LRRC28-217ENST00000560213 IGHDP01880 384 aa20.01■□□□□ 0.79
LRRC28-217ENST00000560213 ARID4AP29374 1257 aaPredicted RBP20.01■□□□□ 0.79
LRRC28-217ENST00000560213 RASGRF1Q13972 1273 aa20.01■□□□□ 0.79
LRRC28-217ENST00000560213 RBM26Q5T8P6 1007 aaKnown RBP20.01■□□□□ 0.79
LRRC28-217ENST00000560213 USP50Q70EL3 339 aaPredicted RBP20.01■□□□□ 0.79
LRRC28-217ENST00000560213 MMP14P50281 582 aa20■□□□□ 0.79
LRRC28-217ENST00000560213 ZNF280AP59817 542 aaPredicted RBP20■□□□□ 0.79
LRRC28-217ENST00000560213 SAMD7Q7Z3H4 446 aa20■□□□□ 0.79
LRRC28-217ENST00000560213 CLEC11AQ9Y240 323 aa20■□□□□ 0.79
LRRC28-217ENST00000560213 TOMM70O94826 608 aa19.99■□□□□ 0.79
LRRC28-217ENST00000560213 TBC1D10BQ4KMP7 808 aaPredicted RBP19.99■□□□□ 0.79
LRRC28-217ENST00000560213 ANKRD45Q5TZF3 282 aa19.99■□□□□ 0.79
LRRC28-217ENST00000560213 SPATA5Q8NB90 893 aa19.99■□□□□ 0.79
LRRC28-217ENST00000560213 ZNF512BQ96KM6 892 aaPredicted RBP19.99■□□□□ 0.79
LRRC28-217ENST00000560213 HMG20BQ9P0W2 317 aa19.99■□□□□ 0.79
LRRC28-217ENST00000560213 PDS5AQ29RF7 1337 aaKnown RBP19.99■□□□□ 0.79
LRRC28-217ENST00000560213 MCAMP43121 646 aa19.98■□□□□ 0.79
LRRC28-217ENST00000560213 ZGPATQ8N5A5 531 aaKnown RBP19.98■□□□□ 0.79
LRRC28-217ENST00000560213 MYOZ2Q9NPC6 264 aa19.98■□□□□ 0.79
LRRC28-217ENST00000560213 TTF2Q9UNY4 1162 aaKnown RBP19.98■□□□□ 0.79
LRRC28-217ENST00000560213 SUGT1Q9Y2Z0 365 aa19.98■□□□□ 0.79
LRRC28-217ENST00000560213 COL1A1P02452 1464 aaPredicted RBP19.98■□□□□ 0.79
LRRC28-217ENST00000560213 SCARF1Q14162 830 aa19.97■□□□□ 0.79
LRRC28-217ENST00000560213 KIF4BQ2VIQ3 1234 aa19.97■□□□□ 0.79
LRRC28-217ENST00000560213 LDHDQ86WU2 507 aa19.97■□□□□ 0.79
LRRC28-217ENST00000560213 SMC5Q8IY18 1101 aa19.97■□□□□ 0.79
LRRC28-217ENST00000560213 TRPM4Q8TD43 1214 aa19.97■□□□□ 0.79
LRRC28-217ENST00000560213 SALL1Q9NSC2 1324 aa19.97■□□□□ 0.79
LRRC28-217ENST00000560213 POTEIP0CG38 1075 aa19.96■□□□□ 0.79
LRRC28-217ENST00000560213 POTEJP0CG39 1038 aa19.96■□□□□ 0.79
LRRC28-217ENST00000560213 HIRAP54198 1017 aaPredicted RBP19.96■□□□□ 0.79
LRRC28-217ENST00000560213 GRIK5Q16478 980 aa19.96■□□□□ 0.79
LRRC28-217ENST00000560213 PI16Q6UXB8 463 aa19.96■□□□□ 0.79
LRRC28-217ENST00000560213 RBM46Q8TBY0 533 aaKnown RBP19.96■□□□□ 0.79
LRRC28-217ENST00000560213 SNRKQ9NRH2 765 aa19.96■□□□□ 0.79
LRRC28-217ENST00000560213 ABCF2Q9UG63 623 aa19.96■□□□□ 0.79
LRRC28-217ENST00000560213 EGFRP00533 1210 aa19.95■□□□□ 0.78
LRRC28-217ENST00000560213 LDHBP07195 334 aaKnown RBP19.95■□□□□ 0.78
LRRC28-217ENST00000560213 RBM5P52756 815 aaKnown RBP eCLIP19.95■□□□□ 0.78
LRRC28-217ENST00000560213 SPTY2D1Q68D10 685 aaPredicted RBP19.95■□□□□ 0.78
LRRC28-217ENST00000560213 B4GALNT3Q6L9W6 998 aa19.95■□□□□ 0.78
LRRC28-217ENST00000560213 AKAP11Q9UKA4 1901 aa19.94■□□□□ 0.78
LRRC28-217ENST00000560213 DLGAP5Q15398 846 aa19.94■□□□□ 0.78
LRRC28-217ENST00000560213 CHADLQ6NUI6 762 aa19.94■□□□□ 0.78
LRRC28-217ENST00000560213 SMC1BQ8NDV3 1235 aa19.94■□□□□ 0.78
LRRC28-217ENST00000560213 GPATCH3Q96I76 525 aa19.94■□□□□ 0.78
LRRC28-217ENST00000560213 MAST3O60307 1309 aa19.94■□□□□ 0.78
LRRC28-217ENST00000560213 PRDX5P30044 214 aa19.93■□□□□ 0.78
LRRC28-217ENST00000560213 ZAP70P43403 619 aa19.93■□□□□ 0.78
LRRC28-217ENST00000560213 HDLBPQ00341 1268 aaKnown RBP19.93■□□□□ 0.78
LRRC28-217ENST00000560213 CFAP100Q494V2 611 aa19.93■□□□□ 0.78
LRRC28-217ENST00000560213 TBC1D9Q6ZT07 1266 aa19.93■□□□□ 0.78
LRRC28-217ENST00000560213 ERICH6Q7L0X2 663 aa19.93■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms