RNA–Protein interactions for RNA: ENST00000559937.1

SMAD3-212, Transcript of SMAD family member 3, humanhuman

TSL 4

Gene SMAD3, Length 579 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD3-212ENST00000559937 CNNM1Q9NRU3 951 aa9.54□□□□□ -0.88
SMAD3-212ENST00000559937 CCDC39Q9UFE4 941 aa9.54□□□□□ -0.88
SMAD3-212ENST00000559937 UBN2Q6ZU65 1347 aa9.54□□□□□ -0.88
SMAD3-212ENST00000559937 SALL1Q9NSC2 1324 aa9.54□□□□□ -0.88
SMAD3-212ENST00000559937 COL24A1Q17RW2 1714 aa9.53□□□□□ -0.88
SMAD3-212ENST00000559937 BCL9LQ86UU0 1499 aa9.53□□□□□ -0.88
SMAD3-212ENST00000559937 FGFR2P21802 821 aa9.53□□□□□ -0.88
SMAD3-212ENST00000559937 ADD2P35612 726 aa9.53□□□□□ -0.88
SMAD3-212ENST00000559937 FKBP4Q02790 459 aaKnown RBP eCLIP9.53□□□□□ -0.88
SMAD3-212ENST00000559937 SCRN1Q12765 414 aa9.53□□□□□ -0.88
SMAD3-212ENST00000559937 STK3Q13188 491 aa9.53□□□□□ -0.88
SMAD3-212ENST00000559937 PUM3Q15397 648 aaKnown RBP9.53□□□□□ -0.88
SMAD3-212ENST00000559937 LPIN2Q92539 896 aa9.53□□□□□ -0.88
SMAD3-212ENST00000559937 FUCA2Q9BTY2 467 aa9.53□□□□□ -0.88
SMAD3-212ENST00000559937 DDX19AQ9NUU7 478 aaKnown RBP9.53□□□□□ -0.88
SMAD3-212ENST00000559937 CFAP45Q9UL16 551 aa9.53□□□□□ -0.88
SMAD3-212ENST00000559937 CCDC9Q9Y3X0 531 aaKnown RBP9.53□□□□□ -0.88
SMAD3-212ENST00000559937 KIAA1551Q9HCM1 1747 aa9.53□□□□□ -0.88
SMAD3-212ENST00000559937 SPATA31A5Q5VU36 1347 aa9.53□□□□□ -0.88
SMAD3-212ENST00000559937 SPATA31A7Q8IWB4 1347 aa9.53□□□□□ -0.88
SMAD3-212ENST00000559937 FOXP2O15409 715 aa9.52□□□□□ -0.89
SMAD3-212ENST00000559937 JAK2O60674 1132 aa9.52□□□□□ -0.89
SMAD3-212ENST00000559937 CHGBP05060 677 aa9.52□□□□□ -0.89
SMAD3-212ENST00000559937 SLC5A1P13866 664 aa9.52□□□□□ -0.89
SMAD3-212ENST00000559937 MSNP26038 577 aaKnown RBP9.52□□□□□ -0.89
SMAD3-212ENST00000559937 MCAMP43121 646 aa9.52□□□□□ -0.89
SMAD3-212ENST00000559937 CRKLP46109 303 aaKnown RBP9.52□□□□□ -0.89
SMAD3-212ENST00000559937 SCARF1Q14162 830 aa9.52□□□□□ -0.89
SMAD3-212ENST00000559937 ALX1Q15699 326 aa9.52□□□□□ -0.89
SMAD3-212ENST00000559937 WASHC4Q2M389 1173 aa9.52□□□□□ -0.89
SMAD3-212ENST00000559937 INTS5Q6P9B9 1019 aaKnown RBP9.52□□□□□ -0.89
SMAD3-212ENST00000559937 LEO1Q8WVC0 666 aaPredicted RBP9.52□□□□□ -0.89
SMAD3-212ENST00000559937 SPATA32Q96LK8 384 aa9.52□□□□□ -0.89
SMAD3-212ENST00000559937 TBC1D2BQ9UPU7 963 aa9.52□□□□□ -0.89
SMAD3-212ENST00000559937 NHSQ6T4R5 1651 aa9.51□□□□□ -0.89
SMAD3-212ENST00000559937 CARMIL3Q8ND23 1372 aa9.51□□□□□ -0.89
SMAD3-212ENST00000559937 MAST2Q6P0Q8 1798 aa9.51□□□□□ -0.89
SMAD3-212ENST00000559937 LOC102724428A0A0B4J2F2 783 aa9.51□□□□□ -0.89
SMAD3-212ENST00000559937 PTPDC1A2A3K4 754 aa9.51□□□□□ -0.89
SMAD3-212ENST00000559937 H3BQV1 296 aa9.51□□□□□ -0.89
SMAD3-212ENST00000559937 GPAA1O43292 621 aa9.51□□□□□ -0.89
SMAD3-212ENST00000559937 DHX16O60231 1041 aaKnown RBP9.51□□□□□ -0.89
SMAD3-212ENST00000559937 CCDC192P0DO97 292 aa9.51□□□□□ -0.89
SMAD3-212ENST00000559937 PDIA3P30101 505 aaKnown RBP9.51□□□□□ -0.89
SMAD3-212ENST00000559937 SIK1P57059 783 aa9.51□□□□□ -0.89
SMAD3-212ENST00000559937 APOBRQ0VD83 1088 aa9.51□□□□□ -0.89
SMAD3-212ENST00000559937 IFFO2Q5TF58 517 aa9.51□□□□□ -0.89
SMAD3-212ENST00000559937 RBM43Q6ZSC3 357 aaKnown RBP9.51□□□□□ -0.89
SMAD3-212ENST00000559937 MB21D2Q8IYB1 491 aaPredicted RBP9.51□□□□□ -0.89
SMAD3-212ENST00000559937 SYNE4Q8N205 404 aa9.51□□□□□ -0.89
SMAD3-212ENST00000559937 NCOA7Q8NI08 942 aa9.51□□□□□ -0.89
SMAD3-212ENST00000559937 SYTL4Q96C24 671 aaPredicted RBP9.51□□□□□ -0.89
SMAD3-212ENST00000559937 GJD4Q96KN9 370 aaPredicted RBP9.51□□□□□ -0.89
SMAD3-212ENST00000559937 ZNF396Q96N95 335 aaPredicted RBP9.51□□□□□ -0.89
SMAD3-212ENST00000559937 UTP14AQ9BVJ6 771 aaKnown RBP9.51□□□□□ -0.89
SMAD3-212ENST00000559937 NUP62CLQ9H1M0 184 aa9.51□□□□□ -0.89
SMAD3-212ENST00000559937 NOL7Q9UMY1 257 aaKnown RBP9.51□□□□□ -0.89
SMAD3-212ENST00000559937 TAF1LQ8IZX4 1826 aa9.51□□□□□ -0.89
SMAD3-212ENST00000559937 MYH6P13533 1939 aa9.5□□□□□ -0.89
SMAD3-212ENST00000559937 BTAF1O14981 1849 aa9.5□□□□□ -0.89
SMAD3-212ENST00000559937 GOLGA6L4A6NEF3 574 aa9.5□□□□□ -0.89
SMAD3-212ENST00000559937 ZNF213O14771 459 aa9.5□□□□□ -0.89
SMAD3-212ENST00000559937 PRC1O43663 620 aa9.5□□□□□ -0.89
SMAD3-212ENST00000559937 ZNF500O60304 480 aaPredicted RBP9.5□□□□□ -0.89
SMAD3-212ENST00000559937 CAMTA2O94983 1202 aa9.5□□□□□ -0.89
SMAD3-212ENST00000559937 CTDNEP1O95476 244 aa9.5□□□□□ -0.89
SMAD3-212ENST00000559937 FGAP02671 866 aa9.5□□□□□ -0.89
SMAD3-212ENST00000559937 MAP3K11Q16584 847 aa9.5□□□□□ -0.89
SMAD3-212ENST00000559937 CCDC152Q4G0S7 254 aa9.5□□□□□ -0.89
SMAD3-212ENST00000559937 CCDC102BQ68D86 513 aa9.5□□□□□ -0.89
SMAD3-212ENST00000559937 CLEC4GQ6UXB4 293 aa9.5□□□□□ -0.89
SMAD3-212ENST00000559937 RALYLQ86SE5 291 aaKnown RBP9.5□□□□□ -0.89
SMAD3-212ENST00000559937 FERMT3Q86UX7 667 aa9.5□□□□□ -0.89
SMAD3-212ENST00000559937 MARCH10Q8NA82 808 aaPredicted RBP9.5□□□□□ -0.89
SMAD3-212ENST00000559937 CCDC85AQ96PX6 553 aaPredicted RBP9.5□□□□□ -0.89
SMAD3-212ENST00000559937 PUS7LQ9H0K6 701 aaKnown RBP9.5□□□□□ -0.89
SMAD3-212ENST00000559937 ZNF652Q9Y2D9 606 aa9.5□□□□□ -0.89
SMAD3-212ENST00000559937 ZKSCAN5Q9Y2L8 839 aa9.5□□□□□ -0.89
SMAD3-212ENST00000559937 DLEC1Q9Y238 1755 aa9.5□□□□□ -0.89
SMAD3-212ENST00000559937 CCDC88AQ3V6T2 1871 aa9.49□□□□□ -0.89
SMAD3-212ENST00000559937 THSD7AQ9UPZ6 1657 aa9.49□□□□□ -0.89
SMAD3-212ENST00000559937 LY75O60449 1722 aa9.49□□□□□ -0.89
SMAD3-212ENST00000559937 NTSR2O95665 410 aa9.49□□□□□ -0.89
SMAD3-212ENST00000559937 CAVIN2O95810 425 aa9.49□□□□□ -0.89
SMAD3-212ENST00000559937 PDE6AP16499 860 aa9.49□□□□□ -0.89
SMAD3-212ENST00000559937 ATP6V1AP38606 617 aa9.49□□□□□ -0.89
SMAD3-212ENST00000559937 PHKA1P46020 1223 aa9.49□□□□□ -0.89
SMAD3-212ENST00000559937 TRDNQ13061 729 aa9.49□□□□□ -0.89
SMAD3-212ENST00000559937 SLFNL1Q499Z3 407 aa9.49□□□□□ -0.89
SMAD3-212ENST00000559937 SUSD4Q5VX71 490 aa9.49□□□□□ -0.89
SMAD3-212ENST00000559937 TTLL5Q6EMB2 1281 aa9.49□□□□□ -0.89
SMAD3-212ENST00000559937 RNF214Q8ND24 703 aa9.49□□□□□ -0.89
SMAD3-212ENST00000559937 CDC5LQ99459 802 aaKnown RBP9.49□□□□□ -0.89
SMAD3-212ENST00000559937 LRRC2Q9BYS8 371 aa9.49□□□□□ -0.89
SMAD3-212ENST00000559937 CLSTN2Q9H4D0 955 aa9.49□□□□□ -0.89
SMAD3-212ENST00000559937 PIH1D3Q9NQM4 214 aaKnown RBP9.49□□□□□ -0.89
SMAD3-212ENST00000559937 RCOR1Q9UKL0 485 aa9.49□□□□□ -0.89
SMAD3-212ENST00000559937 LAMB1P07942 1786 aa9.49□□□□□ -0.89
SMAD3-212ENST00000559937 TCRBV5S4A2TA0A5A2 114 aa9.48□□□□□ -0.89
SMAD3-212ENST00000559937 CTAGE5O15320 804 aa9.48□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms