RNA–Protein interactions for RNA: ENST00000557884.5

USP3-205, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 958 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-205ENST00000557884 CCDC102BQ68D86 513 aa17.66■□□□□ 0.42
USP3-205ENST00000557884 AGBL3Q8NEM8 1001 aa17.66■□□□□ 0.42
USP3-205ENST00000557884 DPF2Q92785 391 aa17.66■□□□□ 0.42
USP3-205ENST00000557884 GMLQ99445 158 aa17.66■□□□□ 0.42
USP3-205ENST00000557884 GPR108Q9NPR9 543 aa17.66■□□□□ 0.42
USP3-205ENST00000557884 KIAA0825Q8IV33 1275 aa17.65■□□□□ 0.42
USP3-205ENST00000557884 CERS5Q8N5B7 392 aa17.65■□□□□ 0.42
USP3-205ENST00000557884 TRPM4Q8TD43 1214 aa17.65■□□□□ 0.42
USP3-205ENST00000557884 EAF2Q96CJ1 260 aaPredicted RBP17.65■□□□□ 0.42
USP3-205ENST00000557884 KIF1BPQ96EK5 621 aa17.65■□□□□ 0.42
USP3-205ENST00000557884 DBNDD2Q9BQY9 259 aa17.65■□□□□ 0.42
USP3-205ENST00000557884 CCDC8Q9H0W5 538 aaPredicted RBP17.65■□□□□ 0.42
USP3-205ENST00000557884 ADARB2Q9NS39 739 aaKnown RBP17.65■□□□□ 0.42
USP3-205ENST00000557884 GNL3LQ9NVN8 582 aaKnown RBP17.65■□□□□ 0.42
USP3-205ENST00000557884 TLR7Q9NYK1 1049 aaKnown RBP17.65■□□□□ 0.42
USP3-205ENST00000557884 FAM205AQ6ZU69 1335 aa17.65■□□□□ 0.42
USP3-205ENST00000557884 F8W031 263 aaPredicted RBP17.64■□□□□ 0.41
USP3-205ENST00000557884 RAB11FIP3O75154 756 aa17.64■□□□□ 0.41
USP3-205ENST00000557884 TBC1D10BQ4KMP7 808 aaPredicted RBP17.64■□□□□ 0.41
USP3-205ENST00000557884 RBM26Q5T8P6 1007 aaKnown RBP17.64■□□□□ 0.41
USP3-205ENST00000557884 SAMD7Q7Z3H4 446 aa17.64■□□□□ 0.41
USP3-205ENST00000557884 AACSQ86V21 672 aa17.64■□□□□ 0.41
USP3-205ENST00000557884 MYO3BQ8WXR4 1341 aa17.64■□□□□ 0.41
USP3-205ENST00000557884 SMARCA5O60264 1052 aaPredicted RBP17.63■□□□□ 0.41
USP3-205ENST00000557884 EGFRP00533 1210 aa17.63■□□□□ 0.41
USP3-205ENST00000557884 USP17L8P0C7I0 530 aa17.63■□□□□ 0.41
USP3-205ENST00000557884 AAMPQ13685 434 aa17.63■□□□□ 0.41
USP3-205ENST00000557884 MFSD14BQ5SR56 506 aa17.63■□□□□ 0.41
USP3-205ENST00000557884 DCTPP1Q9H773 170 aa17.63■□□□□ 0.41
USP3-205ENST00000557884 DBNLQ9UJU6 430 aaKnown RBP17.63■□□□□ 0.41
USP3-205ENST00000557884 CLEC11AQ9Y240 323 aa17.63■□□□□ 0.41
USP3-205ENST00000557884 COL1A1P02452 1464 aaPredicted RBP17.63■□□□□ 0.41
USP3-205ENST00000557884 TOMM70O94826 608 aa17.62■□□□□ 0.41
USP3-205ENST00000557884 ZNF280AP59817 542 aaPredicted RBP17.62■□□□□ 0.41
USP3-205ENST00000557884 GRIK5Q16478 980 aa17.62■□□□□ 0.41
USP3-205ENST00000557884 PNMA8AQ86V59 439 aaPredicted RBP17.62■□□□□ 0.41
USP3-205ENST00000557884 CENPBP07199 599 aaPredicted RBP17.61■□□□□ 0.41
USP3-205ENST00000557884 HIRAP54198 1017 aaPredicted RBP17.61■□□□□ 0.41
USP3-205ENST00000557884 RASGRF1Q13972 1273 aa17.61■□□□□ 0.41
USP3-205ENST00000557884 TTC39AQ5SRH9 613 aa17.61■□□□□ 0.41
USP3-205ENST00000557884 USP50Q70EL3 339 aaPredicted RBP17.61■□□□□ 0.41
USP3-205ENST00000557884 LDHDQ86WU2 507 aa17.61■□□□□ 0.41
USP3-205ENST00000557884 CLASRPQ8N2M8 674 aaKnown RBP17.61■□□□□ 0.41
USP3-205ENST00000557884 LRRCC1Q9C099 1032 aa17.61■□□□□ 0.41
USP3-205ENST00000557884 DENND2AQ9ULE3 1009 aa17.61■□□□□ 0.41
USP3-205ENST00000557884 FKBP1AP62942 108 aaKnown RBP17.6■□□□□ 0.41
USP3-205ENST00000557884 SCARF1Q14162 830 aa17.6■□□□□ 0.41
USP3-205ENST00000557884 KIF4BQ2VIQ3 1234 aa17.6■□□□□ 0.41
USP3-205ENST00000557884 CCDC158Q5M9N0 1113 aa17.6■□□□□ 0.41
USP3-205ENST00000557884 PI16Q6UXB8 463 aa17.6■□□□□ 0.41
USP3-205ENST00000557884 OGFOD1Q8N543 542 aa17.6■□□□□ 0.41
USP3-205ENST00000557884 RBM46Q8TBY0 533 aaKnown RBP17.6■□□□□ 0.41
USP3-205ENST00000557884 TBC1D22AQ8WUA7 517 aa17.6■□□□□ 0.41
USP3-205ENST00000557884 MYOZ2Q9NPC6 264 aa17.6■□□□□ 0.41
USP3-205ENST00000557884 SEMA3EO15041 775 aa17.59■□□□□ 0.41
USP3-205ENST00000557884 IFIT2P09913 472 aaKnown RBP17.59■□□□□ 0.41
USP3-205ENST00000557884 HDAC1Q13547 482 aaPredicted RBP17.59■□□□□ 0.41
USP3-205ENST00000557884 WDR66Q8TBY9 1149 aa17.59■□□□□ 0.41
USP3-205ENST00000557884 HDAC9Q9UKV0 1011 aa17.59■□□□□ 0.41
USP3-205ENST00000557884 TTF2Q9UNY4 1162 aaKnown RBP17.59■□□□□ 0.41
USP3-205ENST00000557884 SCN4AP35499 1836 aa17.58■□□□□ 0.41
USP3-205ENST00000557884 ARAP2Q8WZ64 1704 aa17.58■□□□□ 0.41
USP3-205ENST00000557884 UQCRFS1P1P0C7P4 283 aa17.58■□□□□ 0.4
USP3-205ENST00000557884 ARID4AP29374 1257 aaPredicted RBP17.58■□□□□ 0.4
USP3-205ENST00000557884 MCAMP43121 646 aa17.58■□□□□ 0.4
USP3-205ENST00000557884 MAP1SQ66K74 1059 aaPredicted RBP17.58■□□□□ 0.4
USP3-205ENST00000557884 CHADLQ6NUI6 762 aa17.58■□□□□ 0.4
USP3-205ENST00000557884 SMC1BQ8NDV3 1235 aa17.58■□□□□ 0.4
USP3-205ENST00000557884 SNRKQ9NRH2 765 aa17.58■□□□□ 0.4
USP3-205ENST00000557884 HMG20BQ9P0W2 317 aa17.58■□□□□ 0.4
USP3-205ENST00000557884 ASTN2O75129 1339 aaPredicted RBP17.57■□□□□ 0.4
USP3-205ENST00000557884 SPATA5Q8NB90 893 aa17.57■□□□□ 0.4
USP3-205ENST00000557884 RWDD1Q9H446 243 aaPredicted RBP17.57■□□□□ 0.4
USP3-205ENST00000557884 PCDHAC2Q9Y5I4 1007 aa17.57■□□□□ 0.4
USP3-205ENST00000557884 ZNF646O15015 1829 aaPredicted RBP17.56■□□□□ 0.4
USP3-205ENST00000557884 PSME4Q14997 1843 aa17.56■□□□□ 0.4
USP3-205ENST00000557884 IGHDP01880 384 aa17.56■□□□□ 0.4
USP3-205ENST00000557884 RBM5P52756 815 aaKnown RBP eCLIP17.56■□□□□ 0.4
USP3-205ENST00000557884 C1QTNF8P60827 252 aa17.56■□□□□ 0.4
USP3-205ENST00000557884 CFAP100Q494V2 611 aa17.56■□□□□ 0.4
USP3-205ENST00000557884 PRDX5P30044 214 aa17.55■□□□□ 0.4
USP3-205ENST00000557884 DLGAP5Q15398 846 aa17.55■□□□□ 0.4
USP3-205ENST00000557884 NBPF9Q3BBW0 867 aa17.55■□□□□ 0.4
USP3-205ENST00000557884 TBC1D9Q6ZT07 1266 aa17.55■□□□□ 0.4
USP3-205ENST00000557884 ABCF2Q9UG63 623 aa17.55■□□□□ 0.4
USP3-205ENST00000557884 PDS5AQ29RF7 1337 aaKnown RBP17.54■□□□□ 0.4
USP3-205ENST00000557884 LDHBP07195 334 aaKnown RBP17.54■□□□□ 0.4
USP3-205ENST00000557884 FSTL1Q12841 308 aa17.54■□□□□ 0.4
USP3-205ENST00000557884 ANKRD45Q5TZF3 282 aa17.54■□□□□ 0.4
USP3-205ENST00000557884 CNTROBQ8N137 903 aa17.54■□□□□ 0.4
USP3-205ENST00000557884 GCC1Q96CN9 775 aa17.54■□□□□ 0.4
USP3-205ENST00000557884 GGA3Q9NZ52 723 aa17.54■□□□□ 0.4
USP3-205ENST00000557884 NDUFB9Q9Y6M9 179 aa17.54■□□□□ 0.4
USP3-205ENST00000557884 SALL1Q9NSC2 1324 aa17.53■□□□□ 0.4
USP3-205ENST00000557884 WNT10BO00744 389 aa17.53■□□□□ 0.4
USP3-205ENST00000557884 ZBTB22O15209 634 aa17.53■□□□□ 0.4
USP3-205ENST00000557884 ZAP70P43403 619 aa17.53■□□□□ 0.4
USP3-205ENST00000557884 CRKP46108 304 aa17.53■□□□□ 0.4
USP3-205ENST00000557884 MMP14P50281 582 aa17.53■□□□□ 0.4
USP3-205ENST00000557884 ANGEL2Q5VTE6 544 aaKnown RBP17.53■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms