RNA–Protein interactions for RNA: ENST00000557703.5

SHMT2-234, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 542 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-234ENST00000557703 CCDC158Q5M9N0 1113 aa16.82■□□□□ 0.28
SHMT2-234ENST00000557703 CCDC102BQ68D86 513 aa16.82■□□□□ 0.28
SHMT2-234ENST00000557703 C16orf71Q8IYS4 520 aaPredicted RBP16.82■□□□□ 0.28
SHMT2-234ENST00000557703 ZGPATQ8N5A5 531 aaKnown RBP16.82■□□□□ 0.28
SHMT2-234ENST00000557703 NEUROD6Q96NK8 337 aa16.82■□□□□ 0.28
SHMT2-234ENST00000557703 MRIQ9BWK5 157 aa16.82■□□□□ 0.28
SHMT2-234ENST00000557703 LRRCC1Q9C099 1032 aa16.82■□□□□ 0.28
SHMT2-234ENST00000557703 ADARB2Q9NS39 739 aaKnown RBP16.82■□□□□ 0.28
SHMT2-234ENST00000557703 SCN9AQ15858 1988 aa16.81■□□□□ 0.28
SHMT2-234ENST00000557703 POTECB2RU33 542 aa16.81■□□□□ 0.28
SHMT2-234ENST00000557703 TOMM70O94826 608 aa16.81■□□□□ 0.28
SHMT2-234ENST00000557703 ZC3H15Q8WU90 426 aaKnown RBP16.81■□□□□ 0.28
SHMT2-234ENST00000557703 TAF1DQ9H5J8 278 aaPredicted RBP16.81■□□□□ 0.28
SHMT2-234ENST00000557703 CNOT7Q9UIV1 285 aaKnown RBP16.81■□□□□ 0.28
SHMT2-234ENST00000557703 HDAC9Q9UKV0 1011 aa16.81■□□□□ 0.28
SHMT2-234ENST00000557703 USP17L8P0C7I0 530 aa16.8■□□□□ 0.28
SHMT2-234ENST00000557703 ARID4AP29374 1257 aaPredicted RBP16.8■□□□□ 0.28
SHMT2-234ENST00000557703 EPHX2P34913 555 aa16.8■□□□□ 0.28
SHMT2-234ENST00000557703 ZNF280AP59817 542 aaPredicted RBP16.8■□□□□ 0.28
SHMT2-234ENST00000557703 TMED8Q6PL24 325 aaPredicted RBP16.8■□□□□ 0.28
SHMT2-234ENST00000557703 EXOC6Q8TAG9 804 aa16.8■□□□□ 0.28
SHMT2-234ENST00000557703 ZNF526Q8TF50 670 aaPredicted RBP16.8■□□□□ 0.28
SHMT2-234ENST00000557703 NMRK2Q9NPI5 230 aa16.8■□□□□ 0.28
SHMT2-234ENST00000557703 KCNQ5Q9NR82 932 aa16.8■□□□□ 0.28
SHMT2-234ENST00000557703 MAST3O60307 1309 aa16.79■□□□□ 0.28
SHMT2-234ENST00000557703 SALL1Q9NSC2 1324 aa16.79■□□□□ 0.28
SHMT2-234ENST00000557703 KIF3CO14782 793 aa16.79■□□□□ 0.28
SHMT2-234ENST00000557703 HDLBPQ00341 1268 aaKnown RBP16.79■□□□□ 0.28
SHMT2-234ENST00000557703 RBM46Q8TBY0 533 aaKnown RBP16.79■□□□□ 0.28
SHMT2-234ENST00000557703 ZBTB47Q9UFB7 747 aaPredicted RBP16.79■□□□□ 0.28
SHMT2-234ENST00000557703 ARAP2Q8WZ64 1704 aa16.79■□□□□ 0.28
SHMT2-234ENST00000557703 IFIT2P09913 472 aaKnown RBP16.78■□□□□ 0.28
SHMT2-234ENST00000557703 FSTL1Q12841 308 aa16.78■□□□□ 0.28
SHMT2-234ENST00000557703 MFSD14BQ5SR56 506 aa16.78■□□□□ 0.28
SHMT2-234ENST00000557703 SPTY2D1Q68D10 685 aaPredicted RBP16.78■□□□□ 0.28
SHMT2-234ENST00000557703 LDHDQ86WU2 507 aa16.78■□□□□ 0.28
SHMT2-234ENST00000557703 MICALL2Q8IY33 904 aa16.78■□□□□ 0.28
SHMT2-234ENST00000557703 EAF2Q96CJ1 260 aaPredicted RBP16.78■□□□□ 0.28
SHMT2-234ENST00000557703 EPS15P42566 896 aa16.77■□□□□ 0.28
SHMT2-234ENST00000557703 PHKA1P46020 1223 aa16.77■□□□□ 0.28
SHMT2-234ENST00000557703 AACSQ86V21 672 aa16.77■□□□□ 0.28
SHMT2-234ENST00000557703 MTMR14Q8NCE2 650 aa16.77■□□□□ 0.28
SHMT2-234ENST00000557703 PPIL4Q8WUA2 492 aaKnown RBP eCLIP16.77■□□□□ 0.28
SHMT2-234ENST00000557703 PGAP2Q9UHJ9 254 aa16.77■□□□□ 0.28
SHMT2-234ENST00000557703 ZBTB12Q9Y330 459 aaPredicted RBP16.77■□□□□ 0.28
SHMT2-234ENST00000557703 ADORA1P30542 326 aa16.76■□□□□ 0.27
SHMT2-234ENST00000557703 TTC39AQ5SRH9 613 aa16.76■□□□□ 0.27
SHMT2-234ENST00000557703 ERICH6BQ5W0A0 696 aa16.76■□□□□ 0.27
SHMT2-234ENST00000557703 SMC1BQ8NDV3 1235 aa16.76■□□□□ 0.27
SHMT2-234ENST00000557703 FBXW7Q969H0 707 aa16.76■□□□□ 0.27
SHMT2-234ENST00000557703 DBNLQ9UJU6 430 aaKnown RBP16.76■□□□□ 0.27
SHMT2-234ENST00000557703 SERPINA10Q9UK55 444 aa16.76■□□□□ 0.27
SHMT2-234ENST00000557703 NEFLP07196 543 aa16.75■□□□□ 0.27
SHMT2-234ENST00000557703 SLF2Q8IX21 1173 aa16.75■□□□□ 0.27
SHMT2-234ENST00000557703 SMC5Q8IY18 1101 aa16.75■□□□□ 0.27
SHMT2-234ENST00000557703 GPATCH3Q96I76 525 aa16.75■□□□□ 0.27
SHMT2-234ENST00000557703 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP16.75■□□□□ 0.27
SHMT2-234ENST00000557703 RASGRF1Q13972 1273 aa16.74■□□□□ 0.27
SHMT2-234ENST00000557703 SPATA5Q8NB90 893 aa16.74■□□□□ 0.27
SHMT2-234ENST00000557703 DBNDD2Q9BQY9 259 aa16.74■□□□□ 0.27
SHMT2-234ENST00000557703 IL1RAPL2Q9NP60 686 aa16.74■□□□□ 0.27
SHMT2-234ENST00000557703 MYOZ2Q9NPC6 264 aa16.74■□□□□ 0.27
SHMT2-234ENST00000557703 CHADLQ6NUI6 762 aa16.73■□□□□ 0.27
SHMT2-234ENST00000557703 HHIPL2Q6UWX4 724 aa16.73■□□□□ 0.27
SHMT2-234ENST00000557703 CERS5Q8N5B7 392 aa16.73■□□□□ 0.27
SHMT2-234ENST00000557703 CCDC8Q9H0W5 538 aaPredicted RBP16.73■□□□□ 0.27
SHMT2-234ENST00000557703 PITPNM2Q9BZ72 1349 aa16.72■□□□□ 0.27
SHMT2-234ENST00000557703 MYO1BO43795 1136 aa16.72■□□□□ 0.27
SHMT2-234ENST00000557703 LDHBP07195 334 aaKnown RBP16.72■□□□□ 0.27
SHMT2-234ENST00000557703 CHAF1AQ13111 956 aaPredicted RBP16.72■□□□□ 0.27
SHMT2-234ENST00000557703 TTF1Q15361 905 aaPredicted RBP16.72■□□□□ 0.27
SHMT2-234ENST00000557703 KIF4BQ2VIQ3 1234 aa16.72■□□□□ 0.27
SHMT2-234ENST00000557703 KIAA0825Q8IV33 1275 aa16.72■□□□□ 0.27
SHMT2-234ENST00000557703 HMG20BQ9P0W2 317 aa16.72■□□□□ 0.27
SHMT2-234ENST00000557703 TTF2Q9UNY4 1162 aaKnown RBP16.72■□□□□ 0.27
SHMT2-234ENST00000557703 IQSEC3Q9UPP2 1182 aaPredicted RBP16.72■□□□□ 0.27
SHMT2-234ENST00000557703 MYH13Q9UKX3 1938 aa16.72■□□□□ 0.27
SHMT2-234ENST00000557703 ZNF646O15015 1829 aaPredicted RBP16.71■□□□□ 0.27
SHMT2-234ENST00000557703 APBB1O00213 710 aa16.71■□□□□ 0.27
SHMT2-234ENST00000557703 ATP5JP18859 108 aa16.71■□□□□ 0.27
SHMT2-234ENST00000557703 MCAMP43121 646 aa16.71■□□□□ 0.27
SHMT2-234ENST00000557703 DLGAP5Q15398 846 aa16.71■□□□□ 0.27
SHMT2-234ENST00000557703 EAPPQ56P03 285 aaPredicted RBP16.71■□□□□ 0.27
SHMT2-234ENST00000557703 TEKT1Q969V4 418 aa16.71■□□□□ 0.27
SHMT2-234ENST00000557703 FAM163AQ96GL9 167 aaPredicted RBP16.71■□□□□ 0.27
SHMT2-234ENST00000557703 TTC41PQ6P2S7 1318 aa16.7■□□□□ 0.26
SHMT2-234ENST00000557703 MAP4K4O95819 1239 aaPredicted RBP16.7■□□□□ 0.26
SHMT2-234ENST00000557703 GSTO1P78417 241 aa16.7■□□□□ 0.26
SHMT2-234ENST00000557703 ERICH6Q7L0X2 663 aa16.7■□□□□ 0.26
SHMT2-234ENST00000557703 ZBED3Q96IU2 234 aaPredicted RBP16.7■□□□□ 0.26
SHMT2-234ENST00000557703 ERC2O15083 957 aa16.69■□□□□ 0.26
SHMT2-234ENST00000557703 LDHCP07864 332 aa16.69■□□□□ 0.26
SHMT2-234ENST00000557703 ANKRD45Q5TZF3 282 aa16.69■□□□□ 0.26
SHMT2-234ENST00000557703 CDC37L1Q7L3B6 337 aa16.69■□□□□ 0.26
SHMT2-234ENST00000557703 SAMD7Q7Z3H4 446 aa16.69■□□□□ 0.26
SHMT2-234ENST00000557703 TICAM2Q86XR7 235 aa16.69■□□□□ 0.26
SHMT2-234ENST00000557703 CERS3Q8IU89 383 aa16.69■□□□□ 0.26
SHMT2-234ENST00000557703 DCPSQ96C86 337 aaKnown RBP16.69■□□□□ 0.26
SHMT2-234ENST00000557703 ZDHHC15Q96MV8 337 aa16.69■□□□□ 0.26
SHMT2-234ENST00000557703 MXD3Q9BW11 206 aa16.69■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms