RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 USP17L3A6NCW0 530 aa15.7■□□□□ 0.1
SHMT2-227ENST00000557269 USP17L4A6NCW7 530 aa15.7■□□□□ 0.1
SHMT2-227ENST00000557269 EIF6P56537 245 aaKnown RBP15.7■□□□□ 0.1
SHMT2-227ENST00000557269 CHAF1AQ13111 956 aaPredicted RBP15.7■□□□□ 0.1
SHMT2-227ENST00000557269 GRIK5Q16478 980 aa15.7■□□□□ 0.1
SHMT2-227ENST00000557269 DACT2Q5SW24 774 aa15.7■□□□□ 0.1
SHMT2-227ENST00000557269 TTLL5Q6EMB2 1281 aa15.7■□□□□ 0.1
SHMT2-227ENST00000557269 CIAPIN1Q6FI81 312 aa15.7■□□□□ 0.1
SHMT2-227ENST00000557269 USP17L1Q7RTZ2 530 aa15.7■□□□□ 0.1
SHMT2-227ENST00000557269 CERS5Q8N5B7 392 aa15.7■□□□□ 0.1
SHMT2-227ENST00000557269 FBXW7Q969H0 707 aa15.7■□□□□ 0.1
SHMT2-227ENST00000557269 ZNF512BQ96KM6 892 aaPredicted RBP15.7■□□□□ 0.1
SHMT2-227ENST00000557269 GNL3LQ9NVN8 582 aaKnown RBP15.7■□□□□ 0.1
SHMT2-227ENST00000557269 ZBTB47Q9UFB7 747 aaPredicted RBP15.7■□□□□ 0.1
SHMT2-227ENST00000557269 FAM205AQ6ZU69 1335 aa15.69■□□□□ 0.1
SHMT2-227ENST00000557269 FRAT2O75474 233 aaPredicted RBP15.69■□□□□ 0.1
SHMT2-227ENST00000557269 DDNO94850 711 aaPredicted RBP15.69■□□□□ 0.1
SHMT2-227ENST00000557269 VIL1P09327 827 aaKnown RBP15.69■□□□□ 0.1
SHMT2-227ENST00000557269 UQCRFS1P1P0C7P4 283 aa15.69■□□□□ 0.1
SHMT2-227ENST00000557269 STRIP1Q5VSL9 837 aa15.69■□□□□ 0.1
SHMT2-227ENST00000557269 PLEKHM2Q8IWE5 1019 aa15.69■□□□□ 0.1
SHMT2-227ENST00000557269 SPATA5Q8NB90 893 aa15.69■□□□□ 0.1
SHMT2-227ENST00000557269 ECHDC1Q9NTX5 307 aa15.69■□□□□ 0.1
SHMT2-227ENST00000557269 ZBTB12Q9Y330 459 aaPredicted RBP15.69■□□□□ 0.1
SHMT2-227ENST00000557269 GJA3Q9Y6H8 435 aa15.69■□□□□ 0.1
SHMT2-227ENST00000557269 SEMA3EO15041 775 aa15.68■□□□□ 0.1
SHMT2-227ENST00000557269 ZBTB22O15209 634 aa15.68■□□□□ 0.1
SHMT2-227ENST00000557269 ATP5JP18859 108 aa15.68■□□□□ 0.1
SHMT2-227ENST00000557269 MX1P20591 662 aa15.68■□□□□ 0.1
SHMT2-227ENST00000557269 PDE1AP54750 535 aa15.68■□□□□ 0.1
SHMT2-227ENST00000557269 PI4K2BQ8TCG2 481 aa15.68■□□□□ 0.1
SHMT2-227ENST00000557269 BOLA2Q9H3K6 86 aa15.68■□□□□ 0.1
SHMT2-227ENST00000557269 STAP2Q9UGK3 403 aa15.68■□□□□ 0.1
SHMT2-227ENST00000557269 DENND2AQ9ULE3 1009 aa15.68■□□□□ 0.1
SHMT2-227ENST00000557269 AKAP11Q9UKA4 1901 aa15.67■□□□□ 0.1
SHMT2-227ENST00000557269 PSME4Q14997 1843 aa15.67■□□□□ 0.1
SHMT2-227ENST00000557269 ZAP70P43403 619 aa15.67■□□□□ 0.1
SHMT2-227ENST00000557269 TNIP1Q15025 636 aa15.67■□□□□ 0.1
SHMT2-227ENST00000557269 RSBN1LQ6PCB5 846 aaPredicted RBP15.67■□□□□ 0.1
SHMT2-227ENST00000557269 TBC1D9Q6ZT07 1266 aa15.67■□□□□ 0.1
SHMT2-227ENST00000557269 EDC3Q96F86 508 aaKnown RBP15.67■□□□□ 0.1
SHMT2-227ENST00000557269 ANTXR1Q9H6X2 564 aa15.67■□□□□ 0.1
SHMT2-227ENST00000557269 ZC3H4Q9UPT8 1303 aaKnown RBP15.67■□□□□ 0.1
SHMT2-227ENST00000557269 SHTN1A0MZ66 631 aa15.66■□□□□ 0.1
SHMT2-227ENST00000557269 GLTPD2A6NH11 291 aa15.66■□□□□ 0.1
SHMT2-227ENST00000557269 CYP2E1P05181 493 aaPredicted RBP15.66■□□□□ 0.1
SHMT2-227ENST00000557269 GMPSP49915 693 aaPredicted RBP15.66■□□□□ 0.1
SHMT2-227ENST00000557269 MFSD14BQ5SR56 506 aa15.66■□□□□ 0.1
SHMT2-227ENST00000557269 GPC2Q8N158 579 aa15.66■□□□□ 0.1
SHMT2-227ENST00000557269 PPIL4Q8WUA2 492 aaKnown RBP eCLIP15.66■□□□□ 0.1
SHMT2-227ENST00000557269 GMLQ99445 158 aa15.66■□□□□ 0.1
SHMT2-227ENST00000557269 PDS5AQ29RF7 1337 aaKnown RBP15.66■□□□□ 0.1
SHMT2-227ENST00000557269 TTC41PQ6P2S7 1318 aa15.66■□□□□ 0.1
SHMT2-227ENST00000557269 HAUS7Q99871 368 aa15.65■□□□□ 0.1
SHMT2-227ENST00000557269 PIH1D3Q9NQM4 214 aaKnown RBP15.65■□□□□ 0.1
SHMT2-227ENST00000557269 MYH13Q9UKX3 1938 aa15.64■□□□□ 0.09
SHMT2-227ENST00000557269 F8W031 263 aaPredicted RBP15.64■□□□□ 0.09
SHMT2-227ENST00000557269 MAP4K4O95819 1239 aaPredicted RBP15.64■□□□□ 0.09
SHMT2-227ENST00000557269 SCNN1DP51172 638 aa15.64■□□□□ 0.09
SHMT2-227ENST00000557269 FKBP1AP62942 108 aaKnown RBP15.64■□□□□ 0.09
SHMT2-227ENST00000557269 DPY19L2Q6NUT2 758 aa15.64■□□□□ 0.09
SHMT2-227ENST00000557269 KIAA0825Q8IV33 1275 aa15.64■□□□□ 0.09
SHMT2-227ENST00000557269 WDR66Q8TBY9 1149 aa15.64■□□□□ 0.09
SHMT2-227ENST00000557269 GPATCH3Q96I76 525 aa15.64■□□□□ 0.09
SHMT2-227ENST00000557269 DNAJC2Q99543 621 aaKnown RBP15.64■□□□□ 0.09
SHMT2-227ENST00000557269 SALL1Q9NSC2 1324 aa15.64■□□□□ 0.09
SHMT2-227ENST00000557269 POTECB2RU33 542 aa15.63■□□□□ 0.09
SHMT2-227ENST00000557269 GOLIM4O00461 696 aa15.63■□□□□ 0.09
SHMT2-227ENST00000557269 PRDX5P30044 214 aa15.63■□□□□ 0.09
SHMT2-227ENST00000557269 OSBPL3Q9H4L5 887 aa15.63■□□□□ 0.09
SHMT2-227ENST00000557269 ABCF2Q9UG63 623 aa15.63■□□□□ 0.09
SHMT2-227ENST00000557269 GLRX3O76003 335 aaKnown RBP15.62■□□□□ 0.09
SHMT2-227ENST00000557269 EPS15P42566 896 aa15.62■□□□□ 0.09
SHMT2-227ENST00000557269 AGBL3Q8NEM8 1001 aa15.62■□□□□ 0.09
SHMT2-227ENST00000557269 ZNF526Q8TF50 670 aaPredicted RBP15.62■□□□□ 0.09
SHMT2-227ENST00000557269 ZNF384Q8TF68 577 aa15.62■□□□□ 0.09
SHMT2-227ENST00000557269 TBC1D22AQ8WUA7 517 aa15.62■□□□□ 0.09
SHMT2-227ENST00000557269 GPRC5DQ9NZD1 345 aa15.62■□□□□ 0.09
SHMT2-227ENST00000557269 ERC2O15083 957 aa15.61■□□□□ 0.09
SHMT2-227ENST00000557269 RPS12P25398 132 aaKnown RBP15.61■□□□□ 0.09
SHMT2-227ENST00000557269 MICALL2Q8IY33 904 aa15.61■□□□□ 0.09
SHMT2-227ENST00000557269 DPF2Q92785 391 aa15.61■□□□□ 0.09
SHMT2-227ENST00000557269 L3MBTL3Q96JM7 780 aaPredicted RBP15.61■□□□□ 0.09
SHMT2-227ENST00000557269 PAG1Q9NWQ8 432 aa15.61■□□□□ 0.09
SHMT2-227ENST00000557269 CNOT7Q9UIV1 285 aaKnown RBP15.61■□□□□ 0.09
SHMT2-227ENST00000557269 PCDHAC2Q9Y5I4 1007 aa15.61■□□□□ 0.09
SHMT2-227ENST00000557269 AOX1Q06278 1338 aa15.61■□□□□ 0.09
SHMT2-227ENST00000557269 MYO3BQ8WXR4 1341 aa15.61■□□□□ 0.09
SHMT2-227ENST00000557269 EGFRP00533 1210 aa15.6■□□□□ 0.09
SHMT2-227ENST00000557269 CHGBP05060 677 aa15.6■□□□□ 0.09
SHMT2-227ENST00000557269 USP17L8P0C7I0 530 aa15.6■□□□□ 0.09
SHMT2-227ENST00000557269 RGS3P49796 1198 aa15.6■□□□□ 0.09
SHMT2-227ENST00000557269 ZNF280AP59817 542 aaPredicted RBP15.6■□□□□ 0.09
SHMT2-227ENST00000557269 MECOMQ03112 1051 aa15.6■□□□□ 0.09
SHMT2-227ENST00000557269 TTF2Q9UNY4 1162 aaKnown RBP15.6■□□□□ 0.09
SHMT2-227ENST00000557269 MYO5AQ9Y4I1 1855 aaKnown RBP15.6■□□□□ 0.09
SHMT2-227ENST00000557269 LDHBP07195 334 aaKnown RBP15.59■□□□□ 0.09
SHMT2-227ENST00000557269 GSPT1P15170 499 aaKnown RBP15.59■□□□□ 0.09
SHMT2-227ENST00000557269 DIXDC1Q155Q3 683 aa15.59■□□□□ 0.09
SHMT2-227ENST00000557269 SLFNL1Q499Z3 407 aa15.59■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 108.2 ms