RNA–Protein interactions for RNA: ENST00000556973.1

LINC00239-201, long intergenic non-protein coding RNA 239, humanhuman

TSL 3 BASIC

Gene LINC00239, Length 639 nt, Biotype lincRNA, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00239-201ENST00000556973 TBC1D10BQ4KMP7 808 aaPredicted RBP13.23□□□□□ -0.29
LINC00239-201ENST00000556973 MAP1SQ66K74 1059 aaPredicted RBP13.23□□□□□ -0.29
LINC00239-201ENST00000556973 CEP85Q6P2H3 762 aa13.23□□□□□ -0.29
LINC00239-201ENST00000556973 TRPM4Q8TD43 1214 aa13.23□□□□□ -0.29
LINC00239-201ENST00000556973 MYOZ2Q9NPC6 264 aa13.23□□□□□ -0.29
LINC00239-201ENST00000556973 HDAC9Q9UKV0 1011 aa13.23□□□□□ -0.29
LINC00239-201ENST00000556973 SURF6O75683 361 aaKnown RBP13.22□□□□□ -0.29
LINC00239-201ENST00000556973 EGFRP00533 1210 aa13.22□□□□□ -0.29
LINC00239-201ENST00000556973 TIMM10P62072 90 aa13.22□□□□□ -0.29
LINC00239-201ENST00000556973 KIF4BQ2VIQ3 1234 aa13.22□□□□□ -0.29
LINC00239-201ENST00000556973 NOP58Q9Y2X3 529 aaKnown RBP13.22□□□□□ -0.29
LINC00239-201ENST00000556973 MYH13Q9UKX3 1938 aa13.21□□□□□ -0.29
LINC00239-201ENST00000556973 PASKQ96RG2 1323 aa13.21□□□□□ -0.29
LINC00239-201ENST00000556973 A0A1B0GUL7 405 aa13.21□□□□□ -0.29
LINC00239-201ENST00000556973 RRP1P56182 461 aaKnown RBP13.21□□□□□ -0.29
LINC00239-201ENST00000556973 CDC37L1Q7L3B6 337 aa13.21□□□□□ -0.29
LINC00239-201ENST00000556973 KIAA0825Q8IV33 1275 aa13.21□□□□□ -0.29
LINC00239-201ENST00000556973 CERS5Q8N5B7 392 aa13.21□□□□□ -0.29
LINC00239-201ENST00000556973 TBC1D22AQ8WUA7 517 aa13.21□□□□□ -0.29
LINC00239-201ENST00000556973 GNL3LQ9NVN8 582 aaKnown RBP13.21□□□□□ -0.29
LINC00239-201ENST00000556973 POLR2AP24928 1970 aaKnown RBP13.21□□□□□ -0.29
LINC00239-201ENST00000556973 ARAP2Q8WZ64 1704 aa13.21□□□□□ -0.3
LINC00239-201ENST00000556973 ZBTB22O15209 634 aa13.2□□□□□ -0.3
LINC00239-201ENST00000556973 HMMRO75330 724 aa13.2□□□□□ -0.3
LINC00239-201ENST00000556973 OS9Q13438 667 aaPredicted RBP13.2□□□□□ -0.3
LINC00239-201ENST00000556973 MFSD14BQ5SR56 506 aa13.2□□□□□ -0.3
LINC00239-201ENST00000556973 DCPSQ96C86 337 aaKnown RBP13.2□□□□□ -0.3
LINC00239-201ENST00000556973 NEUROD6Q96NK8 337 aa13.2□□□□□ -0.3
LINC00239-201ENST00000556973 GPR108Q9NPR9 543 aa13.2□□□□□ -0.3
LINC00239-201ENST00000556973 IQSEC3Q9UPP2 1182 aaPredicted RBP13.2□□□□□ -0.3
LINC00239-201ENST00000556973 TRPM7Q96QT4 1865 aa13.19□□□□□ -0.3
LINC00239-201ENST00000556973 SEMA3EO15041 775 aa13.19□□□□□ -0.3
LINC00239-201ENST00000556973 SCARF1Q14162 830 aa13.19□□□□□ -0.3
LINC00239-201ENST00000556973 HSP90AB4PQ58FF6 505 aa13.19□□□□□ -0.3
LINC00239-201ENST00000556973 CCDC102BQ68D86 513 aa13.19□□□□□ -0.3
LINC00239-201ENST00000556973 XAGE2Q96GT9 111 aa13.19□□□□□ -0.3
LINC00239-201ENST00000556973 JAG2Q9Y219 1238 aa13.19□□□□□ -0.3
LINC00239-201ENST00000556973 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP13.19□□□□□ -0.3
LINC00239-201ENST00000556973 F8W031 263 aaPredicted RBP13.18□□□□□ -0.3
LINC00239-201ENST00000556973 CHAF1AQ13111 956 aaPredicted RBP13.18□□□□□ -0.3
LINC00239-201ENST00000556973 DLGAP5Q15398 846 aa13.18□□□□□ -0.3
LINC00239-201ENST00000556973 ERC1Q8IUD2 1116 aa13.18□□□□□ -0.3
LINC00239-201ENST00000556973 SIRT2Q8IXJ6 389 aa13.18□□□□□ -0.3
LINC00239-201ENST00000556973 MTMR14Q8NCE2 650 aa13.18□□□□□ -0.3
LINC00239-201ENST00000556973 WDR66Q8TBY9 1149 aa13.18□□□□□ -0.3
LINC00239-201ENST00000556973 DENND2AQ9ULE3 1009 aa13.18□□□□□ -0.3
LINC00239-201ENST00000556973 SUGT1Q9Y2Z0 365 aa13.18□□□□□ -0.3
LINC00239-201ENST00000556973 TMEM88BA6NKF7 163 aa13.17□□□□□ -0.3
LINC00239-201ENST00000556973 WNT10BO00744 389 aa13.17□□□□□ -0.3
LINC00239-201ENST00000556973 ADORA1P30542 326 aa13.17□□□□□ -0.3
LINC00239-201ENST00000556973 PHKA1P46020 1223 aa13.17□□□□□ -0.3
LINC00239-201ENST00000556973 NBPF9Q3BBW0 867 aa13.17□□□□□ -0.3
LINC00239-201ENST00000556973 TNNI3KQ59H18 835 aa13.17□□□□□ -0.3
LINC00239-201ENST00000556973 GORABQ5T7V8 394 aa13.17□□□□□ -0.3
LINC00239-201ENST00000556973 USP48Q86UV5 1035 aa13.17□□□□□ -0.3
LINC00239-201ENST00000556973 MRIQ9BWK5 157 aa13.17□□□□□ -0.3
LINC00239-201ENST00000556973 CREBZFQ9NS37 354 aa13.17□□□□□ -0.3
LINC00239-201ENST00000556973 TTF2Q9UNY4 1162 aaKnown RBP13.17□□□□□ -0.3
LINC00239-201ENST00000556973 FPGT-TNNI3KV9GXZ4 949 aa13.17□□□□□ -0.3
LINC00239-201ENST00000556973 ECM29Q5VYK3 1845 aa13.17□□□□□ -0.3
LINC00239-201ENST00000556973 PITPNM2Q9BZ72 1349 aa13.16□□□□□ -0.3
LINC00239-201ENST00000556973 HDLBPQ00341 1268 aaKnown RBP13.16□□□□□ -0.3
LINC00239-201ENST00000556973 CFAP100Q494V2 611 aa13.16□□□□□ -0.3
LINC00239-201ENST00000556973 ANGEL2Q5VTE6 544 aaKnown RBP13.16□□□□□ -0.3
LINC00239-201ENST00000556973 KRT26Q7Z3Y9 468 aa13.16□□□□□ -0.3
LINC00239-201ENST00000556973 SULF1Q8IWU6 871 aa13.16□□□□□ -0.3
LINC00239-201ENST00000556973 ZBED3Q96IU2 234 aaPredicted RBP13.16□□□□□ -0.3
LINC00239-201ENST00000556973 GLIS2Q9BZE0 524 aaPredicted RBP13.16□□□□□ -0.3
LINC00239-201ENST00000556973 GGA3Q9NZ52 723 aa13.16□□□□□ -0.3
LINC00239-201ENST00000556973 SERPINA10Q9UK55 444 aa13.16□□□□□ -0.3
LINC00239-201ENST00000556973 EXOC6BQ9Y2D4 811 aa13.16□□□□□ -0.3
LINC00239-201ENST00000556973 ASTN2O75129 1339 aaPredicted RBP13.15□□□□□ -0.3
LINC00239-201ENST00000556973 TRAF5O00463 557 aa13.15□□□□□ -0.3
LINC00239-201ENST00000556973 MYO1BO43795 1136 aa13.15□□□□□ -0.3
LINC00239-201ENST00000556973 RAB11FIP3O75154 756 aa13.15□□□□□ -0.3
LINC00239-201ENST00000556973 RBM5P52756 815 aaKnown RBP eCLIP13.15□□□□□ -0.3
LINC00239-201ENST00000556973 CST9Q5W186 159 aa13.15□□□□□ -0.3
LINC00239-201ENST00000556973 DNAJC5GQ8N7S2 189 aa13.15□□□□□ -0.3
LINC00239-201ENST00000556973 PRMT6Q96LA8 375 aaPredicted RBP13.15□□□□□ -0.3
LINC00239-201ENST00000556973 MAST3O60307 1309 aa13.14□□□□□ -0.31
LINC00239-201ENST00000556973 PDS5AQ29RF7 1337 aaKnown RBP13.14□□□□□ -0.31
LINC00239-201ENST00000556973 SALL1Q9NSC2 1324 aa13.14□□□□□ -0.31
LINC00239-201ENST00000556973 UQCRFS1P1P0C7P4 283 aa13.14□□□□□ -0.31
LINC00239-201ENST00000556973 HTRA3P83110 453 aa13.14□□□□□ -0.31
LINC00239-201ENST00000556973 FMR1Q06787 632 aaKnown RBP eCLIP13.14□□□□□ -0.31
LINC00239-201ENST00000556973 CCDC158Q5M9N0 1113 aa13.14□□□□□ -0.31
LINC00239-201ENST00000556973 ZGPATQ8N5A5 531 aaKnown RBP13.14□□□□□ -0.31
LINC00239-201ENST00000556973 RHPN1Q8TCX5 695 aa13.14□□□□□ -0.31
LINC00239-201ENST00000556973 SPDYE2BA6NHP3 402 aa13.13□□□□□ -0.31
LINC00239-201ENST00000556973 ADM5C9JUS6 153 aa13.13□□□□□ -0.31
LINC00239-201ENST00000556973 SPDYE6P0CI01 402 aa13.13□□□□□ -0.31
LINC00239-201ENST00000556973 ARID4AP29374 1257 aaPredicted RBP13.13□□□□□ -0.31
LINC00239-201ENST00000556973 CRKP46108 304 aa13.13□□□□□ -0.31
LINC00239-201ENST00000556973 AAMPQ13685 434 aa13.13□□□□□ -0.31
LINC00239-201ENST00000556973 GRIK5Q16478 980 aa13.13□□□□□ -0.31
LINC00239-201ENST00000556973 TEKT1Q969V4 418 aa13.13□□□□□ -0.31
LINC00239-201ENST00000556973 EAF2Q96CJ1 260 aaPredicted RBP13.13□□□□□ -0.31
LINC00239-201ENST00000556973 KIF1BPQ96EK5 621 aa13.13□□□□□ -0.31
LINC00239-201ENST00000556973 CRBNQ96SW2 442 aa13.13□□□□□ -0.31
LINC00239-201ENST00000556973 DBNDD2Q9BQY9 259 aa13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms