RNA–Protein interactions for RNA: ENST00000556798.1

SHMT2-225, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 525 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-225ENST00000556798 AKAP11Q9UKA4 1901 aa21.53■■□□□ 1.04
SHMT2-225ENST00000556798 RAB11FIP3O75154 756 aa21.53■■□□□ 1.04
SHMT2-225ENST00000556798 CENPBP07199 599 aaPredicted RBP21.53■■□□□ 1.04
SHMT2-225ENST00000556798 RPS12P25398 132 aaKnown RBP21.53■■□□□ 1.04
SHMT2-225ENST00000556798 CERS5Q8N5B7 392 aa21.53■■□□□ 1.04
SHMT2-225ENST00000556798 EAF2Q96CJ1 260 aaPredicted RBP21.53■■□□□ 1.04
SHMT2-225ENST00000556798 KIF1BPQ96EK5 621 aa21.53■■□□□ 1.04
SHMT2-225ENST00000556798 DBNDD2Q9BQY9 259 aa21.53■■□□□ 1.04
SHMT2-225ENST00000556798 CCDC8Q9H0W5 538 aaPredicted RBP21.53■■□□□ 1.04
SHMT2-225ENST00000556798 TLR7Q9NYK1 1049 aaKnown RBP21.53■■□□□ 1.04
SHMT2-225ENST00000556798 CNOT7Q9UIV1 285 aaKnown RBP21.53■■□□□ 1.04
SHMT2-225ENST00000556798 FAM205AQ6ZU69 1335 aa21.53■■□□□ 1.04
SHMT2-225ENST00000556798 GORABQ5T7V8 394 aa21.52■■□□□ 1.04
SHMT2-225ENST00000556798 AACSQ86V21 672 aa21.52■■□□□ 1.04
SHMT2-225ENST00000556798 AGBL3Q8NEM8 1001 aa21.52■■□□□ 1.04
SHMT2-225ENST00000556798 DPF2Q92785 391 aa21.52■■□□□ 1.04
SHMT2-225ENST00000556798 GMLQ99445 158 aa21.52■■□□□ 1.04
SHMT2-225ENST00000556798 DCTPP1Q9H773 170 aa21.52■■□□□ 1.04
SHMT2-225ENST00000556798 DBNLQ9UJU6 430 aaKnown RBP21.52■■□□□ 1.04
SHMT2-225ENST00000556798 SMARCA5O60264 1052 aaPredicted RBP21.51■■□□□ 1.03
SHMT2-225ENST00000556798 POTEIP0CG38 1075 aa21.51■■□□□ 1.03
SHMT2-225ENST00000556798 POTEJP0CG39 1038 aa21.51■■□□□ 1.03
SHMT2-225ENST00000556798 EAPPQ56P03 285 aaPredicted RBP21.51■■□□□ 1.03
SHMT2-225ENST00000556798 C16orf71Q8IYS4 520 aaPredicted RBP21.51■■□□□ 1.03
SHMT2-225ENST00000556798 GNL3LQ9NVN8 582 aaKnown RBP21.51■■□□□ 1.03
SHMT2-225ENST00000556798 MYO5AQ9Y4I1 1855 aaKnown RBP21.51■■□□□ 1.03
SHMT2-225ENST00000556798 MYO3BQ8WXR4 1341 aa21.51■■□□□ 1.03
SHMT2-225ENST00000556798 MFSD14BQ5SR56 506 aa21.5■■□□□ 1.03
SHMT2-225ENST00000556798 KIAA0825Q8IV33 1275 aa21.5■■□□□ 1.03
SHMT2-225ENST00000556798 POLR2AP24928 1970 aaKnown RBP21.5■■□□□ 1.03
SHMT2-225ENST00000556798 F8W031 263 aaPredicted RBP21.49■■□□□ 1.03
SHMT2-225ENST00000556798 H7C1D1 291 aa21.49■■□□□ 1.03
SHMT2-225ENST00000556798 EGFRP00533 1210 aa21.49■■□□□ 1.03
SHMT2-225ENST00000556798 USP17L8P0C7I0 530 aa21.49■■□□□ 1.03
SHMT2-225ENST00000556798 HDAC1Q13547 482 aaPredicted RBP21.49■■□□□ 1.03
SHMT2-225ENST00000556798 RASGRF1Q13972 1273 aa21.49■■□□□ 1.03
SHMT2-225ENST00000556798 SAMD7Q7Z3H4 446 aa21.49■■□□□ 1.03
SHMT2-225ENST00000556798 CLASRPQ8N2M8 674 aaKnown RBP21.49■■□□□ 1.03
SHMT2-225ENST00000556798 TRPM4Q8TD43 1214 aa21.49■■□□□ 1.03
SHMT2-225ENST00000556798 LRRCC1Q9C099 1032 aa21.49■■□□□ 1.03
SHMT2-225ENST00000556798 ADARB2Q9NS39 739 aaKnown RBP21.49■■□□□ 1.03
SHMT2-225ENST00000556798 ECM29Q5VYK3 1845 aa21.48■■□□□ 1.03
SHMT2-225ENST00000556798 GRIK5Q16478 980 aa21.48■■□□□ 1.03
SHMT2-225ENST00000556798 TBC1D10BQ4KMP7 808 aaPredicted RBP21.48■■□□□ 1.03
SHMT2-225ENST00000556798 RBM26Q5T8P6 1007 aaKnown RBP21.48■■□□□ 1.03
SHMT2-225ENST00000556798 ZNF280AP59817 542 aaPredicted RBP21.47■■□□□ 1.03
SHMT2-225ENST00000556798 FKBP1AP62942 108 aaKnown RBP21.47■■□□□ 1.03
SHMT2-225ENST00000556798 SCARF1Q14162 830 aa21.47■■□□□ 1.03
SHMT2-225ENST00000556798 TTC39AQ5SRH9 613 aa21.47■■□□□ 1.03
SHMT2-225ENST00000556798 PI16Q6UXB8 463 aa21.47■■□□□ 1.03
SHMT2-225ENST00000556798 DENND2AQ9ULE3 1009 aa21.47■■□□□ 1.03
SHMT2-225ENST00000556798 SEMA3EO15041 775 aa21.46■■□□□ 1.03
SHMT2-225ENST00000556798 ARID4AP29374 1257 aaPredicted RBP21.46■■□□□ 1.03
SHMT2-225ENST00000556798 CCDC158Q5M9N0 1113 aa21.46■■□□□ 1.03
SHMT2-225ENST00000556798 TOMM70O94826 608 aa21.45■■□□□ 1.02
SHMT2-225ENST00000556798 IGHDP01880 384 aa21.45■■□□□ 1.02
SHMT2-225ENST00000556798 IFIT2P09913 472 aaKnown RBP21.45■■□□□ 1.02
SHMT2-225ENST00000556798 MCAMP43121 646 aa21.45■■□□□ 1.02
SHMT2-225ENST00000556798 HIRAP54198 1017 aaPredicted RBP21.45■■□□□ 1.02
SHMT2-225ENST00000556798 KIF4BQ2VIQ3 1234 aa21.45■■□□□ 1.02
SHMT2-225ENST00000556798 USP50Q70EL3 339 aaPredicted RBP21.45■■□□□ 1.02
SHMT2-225ENST00000556798 PNMA8AQ86V59 439 aaPredicted RBP21.45■■□□□ 1.02
SHMT2-225ENST00000556798 TBC1D22AQ8WUA7 517 aa21.45■■□□□ 1.02
SHMT2-225ENST00000556798 CLEC11AQ9Y240 323 aa21.45■■□□□ 1.02
SHMT2-225ENST00000556798 MYH2Q9UKX2 1941 aa21.45■■□□□ 1.02
SHMT2-225ENST00000556798 UQCRFS1P1P0C7P4 283 aa21.44■■□□□ 1.02
SHMT2-225ENST00000556798 LDHDQ86WU2 507 aa21.44■■□□□ 1.02
SHMT2-225ENST00000556798 OGFOD1Q8N543 542 aa21.44■■□□□ 1.02
SHMT2-225ENST00000556798 WDR66Q8TBY9 1149 aa21.44■■□□□ 1.02
SHMT2-225ENST00000556798 RWDD1Q9H446 243 aaPredicted RBP21.44■■□□□ 1.02
SHMT2-225ENST00000556798 MYOZ2Q9NPC6 264 aa21.44■■□□□ 1.02
SHMT2-225ENST00000556798 HMG20BQ9P0W2 317 aa21.44■■□□□ 1.02
SHMT2-225ENST00000556798 HDAC9Q9UKV0 1011 aa21.44■■□□□ 1.02
SHMT2-225ENST00000556798 TTF2Q9UNY4 1162 aaKnown RBP21.44■■□□□ 1.02
SHMT2-225ENST00000556798 SPATA5Q8NB90 893 aa21.43■■□□□ 1.02
SHMT2-225ENST00000556798 RBM46Q8TBY0 533 aaKnown RBP21.43■■□□□ 1.02
SHMT2-225ENST00000556798 SNRKQ9NRH2 765 aa21.43■■□□□ 1.02
SHMT2-225ENST00000556798 MAST2Q6P0Q8 1798 aa21.43■■□□□ 1.02
SHMT2-225ENST00000556798 PDS5AQ29RF7 1337 aaKnown RBP21.42■■□□□ 1.02
SHMT2-225ENST00000556798 DOCK2Q92608 1830 aa21.42■■□□□ 1.02
SHMT2-225ENST00000556798 GCC1Q96CN9 775 aa21.42■■□□□ 1.02
SHMT2-225ENST00000556798 PCDHAC2Q9Y5I4 1007 aa21.42■■□□□ 1.02
SHMT2-225ENST00000556798 ASTN2O75129 1339 aaPredicted RBP21.41■■□□□ 1.02
SHMT2-225ENST00000556798 ZBTB22O15209 634 aa21.41■■□□□ 1.02
SHMT2-225ENST00000556798 MAP1SQ66K74 1059 aaPredicted RBP21.41■■□□□ 1.02
SHMT2-225ENST00000556798 CHADLQ6NUI6 762 aa21.41■■□□□ 1.02
SHMT2-225ENST00000556798 SALL1Q9NSC2 1324 aa21.4■■□□□ 1.02
SHMT2-225ENST00000556798 PRDX5P30044 214 aa21.4■■□□□ 1.02
SHMT2-225ENST00000556798 ANKRD45Q5TZF3 282 aa21.4■■□□□ 1.02
SHMT2-225ENST00000556798 SMC1BQ8NDV3 1235 aa21.4■■□□□ 1.02
SHMT2-225ENST00000556798 ZNF512BQ96KM6 892 aaPredicted RBP21.4■■□□□ 1.02
SHMT2-225ENST00000556798 ABCF2Q9UG63 623 aa21.4■■□□□ 1.02
SHMT2-225ENST00000556798 NDUFB9Q9Y6M9 179 aa21.4■■□□□ 1.02
SHMT2-225ENST00000556798 NBPF9Q3BBW0 867 aa21.39■■□□□ 1.01
SHMT2-225ENST00000556798 CFAP100Q494V2 611 aa21.39■■□□□ 1.01
SHMT2-225ENST00000556798 B4GALNT3Q6L9W6 998 aa21.39■■□□□ 1.01
SHMT2-225ENST00000556798 TBC1D9Q6ZT07 1266 aa21.39■■□□□ 1.01
SHMT2-225ENST00000556798 SMC5Q8IY18 1101 aa21.39■■□□□ 1.01
SHMT2-225ENST00000556798 MYH7P12883 1935 aa21.38■■□□□ 1.01
SHMT2-225ENST00000556798 LDHBP07195 334 aaKnown RBP21.38■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms