RNA–Protein interactions for RNA: ENST00000556726.5

CCDC88C-211, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5

Gene CCDC88C, Length 3,617 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-211ENST00000556726 PDIA3P30101 505 aaKnown RBP14.09□□□□□ -0.15
CCDC88C-211ENST00000556726 SYKP43405 635 aa14.09□□□□□ -0.15
CCDC88C-211ENST00000556726 SCARF1Q14162 830 aa14.09□□□□□ -0.15
CCDC88C-211ENST00000556726 MYRIPQ8NFW9 859 aa14.09□□□□□ -0.15
CCDC88C-211ENST00000556726 PRIMPOLQ96LW4 560 aa14.09□□□□□ -0.15
CCDC88C-211ENST00000556726 UBAC1Q9BSL1 405 aa14.09□□□□□ -0.15
CCDC88C-211ENST00000556726 PUS7LQ9H0K6 701 aaKnown RBP14.09□□□□□ -0.15
CCDC88C-211ENST00000556726 KNDC1Q76NI1 1749 aa14.09□□□□□ -0.15
CCDC88C-211ENST00000556726 PRDM1O75626 825 aa14.09□□□□□ -0.15
CCDC88C-211ENST00000556726 SART3Q15020 963 aaKnown RBP14.09□□□□□ -0.15
CCDC88C-211ENST00000556726 MAGEB6Q8N7X4 407 aa14.09□□□□□ -0.15
CCDC88C-211ENST00000556726 GOLGA8FQ08AF8 430 aa14.09□□□□□ -0.15
CCDC88C-211ENST00000556726 GOLGA8DPQ0D2H9 430 aa14.09□□□□□ -0.15
CCDC88C-211ENST00000556726 TRIM22Q8IYM9 498 aa14.09□□□□□ -0.15
CCDC88C-211ENST00000556726 CACTINQ8WUQ7 758 aaKnown RBP14.09□□□□□ -0.15
CCDC88C-211ENST00000556726 ZBTB43O43298 467 aa14.08□□□□□ -0.15
CCDC88C-211ENST00000556726 ARMT1Q9H993 441 aa14.08□□□□□ -0.15
CCDC88C-211ENST00000556726 CEMIPQ8WUJ3 1361 aa14.08□□□□□ -0.16
CCDC88C-211ENST00000556726 NDUFA8P51970 172 aa14.08□□□□□ -0.16
CCDC88C-211ENST00000556726 ZSCAN25Q6NSZ9 544 aa14.08□□□□□ -0.16
CCDC88C-211ENST00000556726 MTERF4Q7Z6M4 381 aaKnown RBP14.08□□□□□ -0.16
CCDC88C-211ENST00000556726 PXDNQ92626 1479 aa14.08□□□□□ -0.16
CCDC88C-211ENST00000556726 URI1O94763 535 aaPredicted RBP14.08□□□□□ -0.16
CCDC88C-211ENST00000556726 AFMP43652 599 aa14.08□□□□□ -0.16
CCDC88C-211ENST00000556726 FAM160A1Q05DH4 1040 aa14.08□□□□□ -0.16
CCDC88C-211ENST00000556726 CLIC6Q96NY7 704 aa14.08□□□□□ -0.16
CCDC88C-211ENST00000556726 GREM2Q9H772 168 aa14.08□□□□□ -0.16
CCDC88C-211ENST00000556726 PCDHA7Q9UN72 937 aa14.08□□□□□ -0.16
CCDC88C-211ENST00000556726 KCNJ14Q9UNX9 436 aa14.08□□□□□ -0.16
CCDC88C-211ENST00000556726 ERICH4A6NGS2 130 aa14.07□□□□□ -0.16
CCDC88C-211ENST00000556726 JMYQ8N9B5 988 aa14.07□□□□□ -0.16
CCDC88C-211ENST00000556726 HELLSQ9NRZ9 838 aa14.07□□□□□ -0.16
CCDC88C-211ENST00000556726 BTG4Q9NY30 223 aa14.07□□□□□ -0.16
CCDC88C-211ENST00000556726 DENND2AQ9ULE3 1009 aa14.07□□□□□ -0.16
CCDC88C-211ENST00000556726 DIP2AQ14689 1571 aa14.07□□□□□ -0.16
CCDC88C-211ENST00000556726 MBD4O95243 580 aa14.07□□□□□ -0.16
CCDC88C-211ENST00000556726 KCNQ4P56696 695 aa14.07□□□□□ -0.16
CCDC88C-211ENST00000556726 STX17P56962 302 aa14.07□□□□□ -0.16
CCDC88C-211ENST00000556726 RESTQ13127 1097 aa14.07□□□□□ -0.16
CCDC88C-211ENST00000556726 CCDC191Q8NCU4 936 aa14.07□□□□□ -0.16
CCDC88C-211ENST00000556726 ITSN1Q15811 1721 aa14.07□□□□□ -0.16
CCDC88C-211ENST00000556726 TMEM94Q12767 1356 aa14.07□□□□□ -0.16
CCDC88C-211ENST00000556726 MAP3K12Q12852 859 aa14.06□□□□□ -0.16
CCDC88C-211ENST00000556726 NACAP1Q9BZK3 213 aa14.06□□□□□ -0.16
CCDC88C-211ENST00000556726 KCNF1Q9H3M0 494 aa14.06□□□□□ -0.16
CCDC88C-211ENST00000556726 CTAGE5O15320 804 aa14.06□□□□□ -0.16
CCDC88C-211ENST00000556726 EPB41L2O43491 1005 aaKnown RBP14.06□□□□□ -0.16
CCDC88C-211ENST00000556726 PFKFB2O60825 505 aa14.06□□□□□ -0.16
CCDC88C-211ENST00000556726 ZNF827Q17R98 1081 aa14.06□□□□□ -0.16
CCDC88C-211ENST00000556726 KIAA1524Q8TCG1 905 aa14.06□□□□□ -0.16
CCDC88C-211ENST00000556726 STAMQ92783 540 aa14.06□□□□□ -0.16
CCDC88C-211ENST00000556726 GOLPH3LQ9H4A5 285 aa14.06□□□□□ -0.16
CCDC88C-211ENST00000556726 ZNF532Q9HCE3 1301 aa14.06□□□□□ -0.16
CCDC88C-211ENST00000556726 PHKA1P46020 1223 aa14.05□□□□□ -0.16
CCDC88C-211ENST00000556726 DZIP3Q86Y13 1208 aaKnown RBP14.05□□□□□ -0.16
CCDC88C-211ENST00000556726 SLC4A4Q9Y6R1 1079 aa14.05□□□□□ -0.16
CCDC88C-211ENST00000556726 DHX8Q14562 1220 aaKnown RBP14.05□□□□□ -0.16
CCDC88C-211ENST00000556726 DPCR1Q3MIW9 517 aa14.05□□□□□ -0.16
CCDC88C-211ENST00000556726 CCDC144BQ3MJ40 725 aa14.05□□□□□ -0.16
CCDC88C-211ENST00000556726 SYT10Q6XYQ8 523 aa14.05□□□□□ -0.16
CCDC88C-211ENST00000556726 TMEM87AQ8NBN3 555 aa14.05□□□□□ -0.16
CCDC88C-211ENST00000556726 DIP2BQ9P265 1576 aa14.05□□□□□ -0.16
CCDC88C-211ENST00000556726 SSRP1Q08945 709 aaKnown RBP14.05□□□□□ -0.16
CCDC88C-211ENST00000556726 KIF18AQ8NI77 898 aa14.05□□□□□ -0.16
CCDC88C-211ENST00000556726 DNAI1Q9UI46 699 aa14.05□□□□□ -0.16
CCDC88C-211ENST00000556726 ZNF609O15014 1411 aa14.05□□□□□ -0.16
CCDC88C-211ENST00000556726 CDKL5O76039 1030 aa14.04□□□□□ -0.16
CCDC88C-211ENST00000556726 ZNF202O95125 648 aa14.04□□□□□ -0.16
CCDC88C-211ENST00000556726 PDIA4P13667 645 aaKnown RBP14.04□□□□□ -0.16
CCDC88C-211ENST00000556726 IGHMBP2P38935 993 aaKnown RBP14.04□□□□□ -0.16
CCDC88C-211ENST00000556726 UBASH3AP57075 661 aa14.04□□□□□ -0.16
CCDC88C-211ENST00000556726 SNW1Q13573 536 aaKnown RBP14.04□□□□□ -0.16
CCDC88C-211ENST00000556726 ZMYM1Q5SVZ6 1142 aa14.04□□□□□ -0.16
CCDC88C-211ENST00000556726 MFSD6Q6ZSS7 791 aa14.04□□□□□ -0.16
CCDC88C-211ENST00000556726 APPBP2Q92624 585 aa14.04□□□□□ -0.16
CCDC88C-211ENST00000556726 RIMBP3CA6NJZ7 1639 aa14.04□□□□□ -0.16
CCDC88C-211ENST00000556726 RIMBP3BA6NNM3 1639 aa14.04□□□□□ -0.16
CCDC88C-211ENST00000556726 RIMBP3Q9UFD9 1639 aa14.04□□□□□ -0.16
CCDC88C-211ENST00000556726 TOP1P11387 765 aaKnown RBP14.04□□□□□ -0.16
CCDC88C-211ENST00000556726 HLFQ16534 295 aa14.04□□□□□ -0.16
CCDC88C-211ENST00000556726 TRMT44Q8IYL2 757 aaKnown RBP14.04□□□□□ -0.16
CCDC88C-211ENST00000556726 PCMTD1Q96MG8 357 aaPredicted RBP14.04□□□□□ -0.16
CCDC88C-211ENST00000556726 XPO4Q9C0E2 1151 aaKnown RBP14.04□□□□□ -0.16
CCDC88C-211ENST00000556726 SIPA1L2Q9P2F8 1722 aaPredicted RBP14.04□□□□□ -0.16
CCDC88C-211ENST00000556726 EXOC5O00471 708 aa14.04□□□□□ -0.16
CCDC88C-211ENST00000556726 SKIDA1Q1XH10 827 aa14.04□□□□□ -0.16
CCDC88C-211ENST00000556726 AGLP35573 1532 aa14.04□□□□□ -0.16
CCDC88C-211ENST00000556726 PCDH11XQ9BZA7 1347 aa14.04□□□□□ -0.16
CCDC88C-211ENST00000556726 PCDH11YQ9BZA8 1340 aa14.04□□□□□ -0.16
CCDC88C-211ENST00000556726 COBLO75128 1261 aa14.03□□□□□ -0.16
CCDC88C-211ENST00000556726 TCIRG1Q13488 830 aa14.03□□□□□ -0.16
CCDC88C-211ENST00000556726 PNOCQ13519 176 aa14.03□□□□□ -0.16
CCDC88C-211ENST00000556726 KCNG4Q8TDN1 519 aa14.03□□□□□ -0.16
CCDC88C-211ENST00000556726 CYP7A1P22680 504 aa14.03□□□□□ -0.16
CCDC88C-211ENST00000556726 ANO1Q5XXA6 986 aa14.03□□□□□ -0.16
CCDC88C-211ENST00000556726 CCDC34Q96HJ3 373 aa14.03□□□□□ -0.16
CCDC88C-211ENST00000556726 HOOK1Q9UJC3 728 aaKnown RBP14.03□□□□□ -0.16
CCDC88C-211ENST00000556726 MYSM1Q5VVJ2 828 aa14.03□□□□□ -0.16
CCDC88C-211ENST00000556726 KRT40Q6A162 431 aa14.03□□□□□ -0.16
CCDC88C-211ENST00000556726 TRERF1Q96PN7 1200 aa14.03□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms