RNA–Protein interactions for RNA: ENST00000556486.5

SCFD1-220, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 974 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-220ENST00000556486 FAM89AQ96GI7 184 aa13.05□□□□□ -0.32
SCFD1-220ENST00000556486 MYBBP1AQ9BQG0 1328 aaKnown RBP13.05□□□□□ -0.32
SCFD1-220ENST00000556486 CENPFP49454 3210 aa13.05□□□□□ -0.32
SCFD1-220ENST00000556486 HTTP42858 3142 aa13.04□□□□□ -0.32
SCFD1-220ENST00000556486 GRXCR2A6NFK2 248 aa13.04□□□□□ -0.32
SCFD1-220ENST00000556486 ATP5J2-PTCD1G3V325 749 aa13.04□□□□□ -0.32
SCFD1-220ENST00000556486 RPS12P25398 132 aaKnown RBP13.04□□□□□ -0.32
SCFD1-220ENST00000556486 TCIRG1Q13488 830 aa13.04□□□□□ -0.32
SCFD1-220ENST00000556486 KRT24Q2M2I5 525 aa13.04□□□□□ -0.32
SCFD1-220ENST00000556486 LCE2DQ5TA82 110 aaPredicted RBP13.04□□□□□ -0.32
SCFD1-220ENST00000556486 R3HDMLQ9H3Y0 253 aa13.04□□□□□ -0.32
SCFD1-220ENST00000556486 C1orf115Q9H7X2 142 aa13.04□□□□□ -0.32
SCFD1-220ENST00000556486 HOXB7P09629 217 aa13.03□□□□□ -0.32
SCFD1-220ENST00000556486 FLIIQ13045 1269 aa13.03□□□□□ -0.32
SCFD1-220ENST00000556486 TTLL12Q14166 644 aaPredicted RBP13.03□□□□□ -0.32
SCFD1-220ENST00000556486 PARP9Q8IXQ6 854 aa13.03□□□□□ -0.32
SCFD1-220ENST00000556486 TBC1D16Q8TBP0 767 aa13.03□□□□□ -0.32
SCFD1-220ENST00000556486 FAM163AQ96GL9 167 aaPredicted RBP13.03□□□□□ -0.32
SCFD1-220ENST00000556486 UFL1O94874 794 aa13.02□□□□□ -0.33
SCFD1-220ENST00000556486 PRKG1Q13976 671 aa13.02□□□□□ -0.33
SCFD1-220ENST00000556486 HABP4Q5JVS0 413 aaKnown RBP13.02□□□□□ -0.33
SCFD1-220ENST00000556486 GPR25O00155 361 aa13.01□□□□□ -0.33
SCFD1-220ENST00000556486 VIL1P09327 827 aaKnown RBP13.01□□□□□ -0.33
SCFD1-220ENST00000556486 TMC4Q7Z404 712 aa13.01□□□□□ -0.33
SCFD1-220ENST00000556486 RUNDC1Q96C34 613 aa13.01□□□□□ -0.33
SCFD1-220ENST00000556486 CCDC85AQ96PX6 553 aaPredicted RBP13.01□□□□□ -0.33
SCFD1-220ENST00000556486 EYA3Q99504 573 aa13.01□□□□□ -0.33
SCFD1-220ENST00000556486 SEC31BQ9NQW1 1179 aa13.01□□□□□ -0.33
SCFD1-220ENST00000556486 FZD1Q9UP38 647 aa13.01□□□□□ -0.33
SCFD1-220ENST00000556486 PSME4Q14997 1843 aa13□□□□□ -0.33
SCFD1-220ENST00000556486 FBXO46Q6PJ61 603 aaPredicted RBP13□□□□□ -0.33
SCFD1-220ENST00000556486 PLPP6Q8IY26 295 aa13□□□□□ -0.33
SCFD1-220ENST00000556486 MXD3Q9BW11 206 aa13□□□□□ -0.33
SCFD1-220ENST00000556486 ZC3H12CQ9C0D7 883 aaKnown RBP13□□□□□ -0.33
SCFD1-220ENST00000556486 MYOZ2Q9NPC6 264 aa13□□□□□ -0.33
SCFD1-220ENST00000556486 CHPF2Q9P2E5 772 aa13□□□□□ -0.33
SCFD1-220ENST00000556486 ANKIB1Q9P2G1 1089 aa13□□□□□ -0.33
SCFD1-220ENST00000556486 BRCA2P51587 3418 aa13□□□□□ -0.33
SCFD1-220ENST00000556486 SPEF2Q9C093 1822 aa12.99□□□□□ -0.33
SCFD1-220ENST00000556486 WTIPA6NIX2 430 aaPredicted RBP12.99□□□□□ -0.33
SCFD1-220ENST00000556486 PKN2Q16513 984 aaKnown RBP12.99□□□□□ -0.33
SCFD1-220ENST00000556486 NBPF9Q3BBW0 867 aa12.99□□□□□ -0.33
SCFD1-220ENST00000556486 RSBN1LQ6PCB5 846 aaPredicted RBP12.99□□□□□ -0.33
SCFD1-220ENST00000556486 JARID2Q92833 1246 aaPredicted RBP12.99□□□□□ -0.33
SCFD1-220ENST00000556486 FBXW7Q969H0 707 aa12.99□□□□□ -0.33
SCFD1-220ENST00000556486 ZNF280AP59817 542 aaPredicted RBP12.98□□□□□ -0.33
SCFD1-220ENST00000556486 RPS8P62241 208 aaKnown RBP12.98□□□□□ -0.33
SCFD1-220ENST00000556486 MAP3K9P80192 1104 aa12.98□□□□□ -0.33
SCFD1-220ENST00000556486 TRIM28Q13263 835 aaKnown RBP12.98□□□□□ -0.33
SCFD1-220ENST00000556486 SF3B3Q15393 1217 aaKnown RBP12.98□□□□□ -0.33
SCFD1-220ENST00000556486 PLBD2Q8NHP8 589 aa12.98□□□□□ -0.33
SCFD1-220ENST00000556486 DBF4Q9UBU7 674 aaPredicted RBP12.98□□□□□ -0.33
SCFD1-220ENST00000556486 LAS1LQ9Y4W2 734 aaKnown RBP12.98□□□□□ -0.33
SCFD1-220ENST00000556486 IRS4O14654 1257 aaPredicted RBP12.97□□□□□ -0.33
SCFD1-220ENST00000556486 FKTNO75072 461 aa12.97□□□□□ -0.33
SCFD1-220ENST00000556486 SASH1O94885 1247 aa12.97□□□□□ -0.33
SCFD1-220ENST00000556486 USP17L8P0C7I0 530 aa12.97□□□□□ -0.33
SCFD1-220ENST00000556486 DDX10Q13206 875 aaKnown RBP12.97□□□□□ -0.33
SCFD1-220ENST00000556486 TMEM92Q6UXU6 159 aa12.97□□□□□ -0.33
SCFD1-220ENST00000556486 GCC1Q96CN9 775 aa12.97□□□□□ -0.33
SCFD1-220ENST00000556486 ISCA1Q9BUE6 129 aa12.97□□□□□ -0.33
SCFD1-220ENST00000556486 GOPCQ9HD26 462 aa12.97□□□□□ -0.33
SCFD1-220ENST00000556486 GGA1Q9UJY5 639 aa12.97□□□□□ -0.33
SCFD1-220ENST00000556486 ADAMTS8Q9UP79 889 aa12.97□□□□□ -0.33
SCFD1-220ENST00000556486 APBB1O00213 710 aa12.96□□□□□ -0.33
SCFD1-220ENST00000556486 SNPHO15079 494 aa12.96□□□□□ -0.33
SCFD1-220ENST00000556486 ZNF853P0CG23 659 aa12.96□□□□□ -0.33
SCFD1-220ENST00000556486 OSBPP22059 807 aa12.96□□□□□ -0.33
SCFD1-220ENST00000556486 FKBP1BP68106 108 aa12.96□□□□□ -0.33
SCFD1-220ENST00000556486 PTPN12Q05209 780 aaKnown RBP12.96□□□□□ -0.33
SCFD1-220ENST00000556486 HIC1Q14526 733 aa12.96□□□□□ -0.33
SCFD1-220ENST00000556486 WDR43Q15061 677 aaKnown RBP eCLIP12.96□□□□□ -0.33
SCFD1-220ENST00000556486 HDGFL1Q5TGJ6 251 aa12.96□□□□□ -0.33
SCFD1-220ENST00000556486 ANKRD13DQ6ZTN6 518 aa12.96□□□□□ -0.33
SCFD1-220ENST00000556486 CCDC146Q8IYE0 955 aa12.96□□□□□ -0.33
SCFD1-220ENST00000556486 AGBL3Q8NEM8 1001 aa12.96□□□□□ -0.33
SCFD1-220ENST00000556486 GMLQ99445 158 aa12.96□□□□□ -0.33
SCFD1-220ENST00000556486 HYPKQ9NX55 129 aa12.96□□□□□ -0.33
SCFD1-220ENST00000556486 TRIM17Q9Y577 477 aa12.96□□□□□ -0.33
SCFD1-220ENST00000556486 ZNF646O15015 1829 aaPredicted RBP12.96□□□□□ -0.33
SCFD1-220ENST00000556486 TM4SF4P48230 202 aa12.95□□□□□ -0.34
SCFD1-220ENST00000556486 FXR1P51114 621 aaKnown RBP eCLIP12.94□□□□□ -0.34
SCFD1-220ENST00000556486 PRKRIP1Q9H875 184 aaPredicted RBP12.94□□□□□ -0.34
SCFD1-220ENST00000556486 PITPNM2Q9BZ72 1349 aa12.93□□□□□ -0.34
SCFD1-220ENST00000556486 USP17L3A6NCW0 530 aa12.93□□□□□ -0.34
SCFD1-220ENST00000556486 USP17L4A6NCW7 530 aa12.93□□□□□ -0.34
SCFD1-220ENST00000556486 ST18O60284 1047 aa12.93□□□□□ -0.34
SCFD1-220ENST00000556486 EN2P19622 333 aaPredicted RBP12.93□□□□□ -0.34
SCFD1-220ENST00000556486 FECHP22830 423 aa12.93□□□□□ -0.34
SCFD1-220ENST00000556486 SREBF2Q12772 1141 aa12.93□□□□□ -0.34
SCFD1-220ENST00000556486 DUSP27Q5VZP5 1158 aa12.93□□□□□ -0.34
SCFD1-220ENST00000556486 OTOP1Q7RTM1 612 aa12.93□□□□□ -0.34
SCFD1-220ENST00000556486 USP17L1Q7RTZ2 530 aa12.93□□□□□ -0.34
SCFD1-220ENST00000556486 MBIPQ9NS73 344 aa12.93□□□□□ -0.34
SCFD1-220ENST00000556486 RBBP6Q7Z6E9 1792 aaKnown RBP12.92□□□□□ -0.34
SCFD1-220ENST00000556486 C2orf72A6NCS6 295 aa12.92□□□□□ -0.34
SCFD1-220ENST00000556486 MYCP01106 439 aaPredicted RBP12.92□□□□□ -0.34
SCFD1-220ENST00000556486 CALD1Q05682 793 aaKnown RBP12.92□□□□□ -0.34
SCFD1-220ENST00000556486 CD99L2Q8TCZ2 262 aa12.92□□□□□ -0.34
SCFD1-220ENST00000556486 IFT57Q9NWB7 429 aa12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 8.5 ms