RNA–Protein interactions for RNA: ENST00000556422.5

TMEM260-210, Transcript of transmembrane protein 260, humanhuman

TSL 1 (best)

Gene TMEM260, Length 3,864 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-210ENST00000556422 RFX7Q2KHR2 1363 aa5.97□□□□□ -1.45
TMEM260-210ENST00000556422 HMGB1P1B2RPK0 211 aaPredicted RBP5.97□□□□□ -1.45
TMEM260-210ENST00000556422 ZSCAN20P17040 1043 aaPredicted RBP5.97□□□□□ -1.45
TMEM260-210ENST00000556422 CASTP20810 708 aaKnown RBP5.97□□□□□ -1.45
TMEM260-210ENST00000556422 TRIM28Q13263 835 aaKnown RBP5.97□□□□□ -1.45
TMEM260-210ENST00000556422 KLHL40Q2TBA0 621 aa5.97□□□□□ -1.45
TMEM260-210ENST00000556422 ANKRD23Q86SG2 305 aa5.97□□□□□ -1.45
TMEM260-210ENST00000556422 FSD1Q9BTV5 496 aa5.97□□□□□ -1.45
TMEM260-210ENST00000556422 ZRANB2O95218 330 aaKnown RBP eCLIP5.97□□□□□ -1.45
TMEM260-210ENST00000556422 CYP19A1P11511 503 aaPredicted RBP5.97□□□□□ -1.45
TMEM260-210ENST00000556422 HLFQ16534 295 aa5.97□□□□□ -1.45
TMEM260-210ENST00000556422 CREB3L3Q68CJ9 461 aa5.97□□□□□ -1.45
TMEM260-210ENST00000556422 MCTP1Q6DN14 999 aa5.97□□□□□ -1.45
TMEM260-210ENST00000556422 SYNE4Q8N205 404 aa5.97□□□□□ -1.45
TMEM260-210ENST00000556422 HAUS7Q99871 368 aa5.97□□□□□ -1.45
TMEM260-210ENST00000556422 NCAPGQ9BPX3 1015 aa5.97□□□□□ -1.45
TMEM260-210ENST00000556422 PANK2Q9BZ23 570 aa5.97□□□□□ -1.45
TMEM260-210ENST00000556422 PUS3Q9BZE2 481 aaKnown RBP5.97□□□□□ -1.45
TMEM260-210ENST00000556422 TM6SF1Q9BZW5 370 aa5.97□□□□□ -1.45
TMEM260-210ENST00000556422 ARAP2Q8WZ64 1704 aa5.97□□□□□ -1.45
TMEM260-210ENST00000556422 RIC1Q4ADV7 1423 aa5.97□□□□□ -1.45
TMEM260-210ENST00000556422 LAMB2P55268 1798 aa5.97□□□□□ -1.45
TMEM260-210ENST00000556422 GOLGA6L6A8MZA4 724 aa5.97□□□□□ -1.45
TMEM260-210ENST00000556422 HIP1O00291 1037 aa5.97□□□□□ -1.45
TMEM260-210ENST00000556422 TAF5LO75529 589 aa5.97□□□□□ -1.45
TMEM260-210ENST00000556422 LIG1P18858 919 aa5.97□□□□□ -1.45
TMEM260-210ENST00000556422 ERCC3P19447 782 aa5.97□□□□□ -1.45
TMEM260-210ENST00000556422 MNS1Q8NEH6 495 aa5.97□□□□□ -1.45
TMEM260-210ENST00000556422 ITFG2Q969R8 447 aa5.97□□□□□ -1.45
TMEM260-210ENST00000556422 SEC62Q99442 399 aaKnown RBP5.97□□□□□ -1.45
TMEM260-210ENST00000556422 ZBTB1Q9Y2K1 713 aa5.97□□□□□ -1.45
TMEM260-210ENST00000556422 SUGT1Q9Y2Z0 365 aa5.97□□□□□ -1.45
TMEM260-210ENST00000556422 KIF3AQ9Y496 699 aa5.97□□□□□ -1.45
TMEM260-210ENST00000556422 PALLDQ8WX93 1383 aa5.96□□□□□ -1.45
TMEM260-210ENST00000556422 BCORQ6W2J9 1755 aa5.96□□□□□ -1.45
TMEM260-210ENST00000556422 EYA2O00167 538 aa5.96□□□□□ -1.46
TMEM260-210ENST00000556422 SLC27A2O14975 620 aa5.96□□□□□ -1.46
TMEM260-210ENST00000556422 WDHD1O75717 1129 aaPredicted RBP5.96□□□□□ -1.46
TMEM260-210ENST00000556422 TIMM10P62072 90 aa5.96□□□□□ -1.46
TMEM260-210ENST00000556422 CSPP1Q1MSJ5 1256 aa5.96□□□□□ -1.46
TMEM260-210ENST00000556422 SLFNL1Q499Z3 407 aa5.96□□□□□ -1.46
TMEM260-210ENST00000556422 USPL1Q5W0Q7 1092 aa5.96□□□□□ -1.46
TMEM260-210ENST00000556422 GIGYF2Q6Y7W6 1299 aaKnown RBP5.96□□□□□ -1.46
TMEM260-210ENST00000556422 SDR16C5Q8N3Y7 309 aa5.96□□□□□ -1.46
TMEM260-210ENST00000556422 GPT2Q8TD30 523 aa5.96□□□□□ -1.46
TMEM260-210ENST00000556422 FAM89AQ96GI7 184 aa5.96□□□□□ -1.46
TMEM260-210ENST00000556422 JAKMIP1Q96N16 626 aaKnown RBP5.96□□□□□ -1.46
TMEM260-210ENST00000556422 CHMP3Q9Y3E7 222 aa5.96□□□□□ -1.46
TMEM260-210ENST00000556422 MAP3K15Q6ZN16 1313 aa5.96□□□□□ -1.46
TMEM260-210ENST00000556422 ESPNB1AK53 854 aa5.96□□□□□ -1.46
TMEM260-210ENST00000556422 CBX1P83916 185 aa5.96□□□□□ -1.46
TMEM260-210ENST00000556422 SKOR2Q2VWA4 1001 aaPredicted RBP5.96□□□□□ -1.46
TMEM260-210ENST00000556422 VPS53Q5VIR6 699 aa5.96□□□□□ -1.46
TMEM260-210ENST00000556422 KCNV2Q8TDN2 545 aa5.96□□□□□ -1.46
TMEM260-210ENST00000556422 VTI1AQ96AJ9 217 aa5.96□□□□□ -1.46
TMEM260-210ENST00000556422 PLA2G12BQ9BX93 195 aa5.96□□□□□ -1.46
TMEM260-210ENST00000556422 GPR108Q9NPR9 543 aa5.96□□□□□ -1.46
TMEM260-210ENST00000556422 NSFL1CQ9UNZ2 370 aaKnown RBP5.96□□□□□ -1.46
TMEM260-210ENST00000556422 ZNF330Q9Y3S2 320 aaPredicted RBP5.96□□□□□ -1.46
TMEM260-210ENST00000556422 SPATA31A1Q5TZJ5 1347 aa5.96□□□□□ -1.46
TMEM260-210ENST00000556422 A0A1B0GUL6 1792 aa5.96□□□□□ -1.46
TMEM260-210ENST00000556422 DTNBO60941 627 aa5.96□□□□□ -1.46
TMEM260-210ENST00000556422 CIAO1O76071 339 aa5.96□□□□□ -1.46
TMEM260-210ENST00000556422 PCCAP05165 728 aaPredicted RBP5.96□□□□□ -1.46
TMEM260-210ENST00000556422 CSF1RP07333 972 aa5.96□□□□□ -1.46
TMEM260-210ENST00000556422 IL15P40933 162 aaPredicted RBP5.96□□□□□ -1.46
TMEM260-210ENST00000556422 GOLGA6L1Q8N7Z2 621 aa5.96□□□□□ -1.46
TMEM260-210ENST00000556422 TEX13AQ9BXU3 409 aaPredicted RBP5.96□□□□□ -1.46
TMEM260-210ENST00000556422 LIMCH1Q9UPQ0 1083 aa5.96□□□□□ -1.46
TMEM260-210ENST00000556422 RPS6KL1Q9Y6S9 549 aa5.96□□□□□ -1.46
TMEM260-210ENST00000556422 COL4A1P02462 1669 aa5.95□□□□□ -1.46
TMEM260-210ENST00000556422 ZNF831Q5JPB2 1677 aa5.95□□□□□ -1.46
TMEM260-210ENST00000556422 UBN2Q6ZU65 1347 aa5.95□□□□□ -1.46
TMEM260-210ENST00000556422 A0A1B0GUL7 405 aa5.95□□□□□ -1.46
TMEM260-210ENST00000556422 TSGA10IPQ3SY00 556 aa5.95□□□□□ -1.46
TMEM260-210ENST00000556422 CCDC129Q6ZRS4 1044 aa5.95□□□□□ -1.46
TMEM260-210ENST00000556422 ZBTB38Q8NAP3 1195 aaPredicted RBP5.95□□□□□ -1.46
TMEM260-210ENST00000556422 MORC4Q8TE76 937 aa5.95□□□□□ -1.46
TMEM260-210ENST00000556422 METTL14Q9HCE5 456 aaKnown RBP5.95□□□□□ -1.46
TMEM260-210ENST00000556422 SH3TC1Q8TE82 1336 aa5.95□□□□□ -1.46
TMEM260-210ENST00000556422 DOCK2Q92608 1830 aa5.95□□□□□ -1.46
TMEM260-210ENST00000556422 EXOC5O00471 708 aa5.95□□□□□ -1.46
TMEM260-210ENST00000556422 STARD3NLO95772 234 aa5.95□□□□□ -1.46
TMEM260-210ENST00000556422 CCT2P78371 535 aaKnown RBP5.95□□□□□ -1.46
TMEM260-210ENST00000556422 ME3Q16798 604 aa5.95□□□□□ -1.46
TMEM260-210ENST00000556422 NLRP10Q86W26 655 aa5.95□□□□□ -1.46
TMEM260-210ENST00000556422 KBTBD3Q8NAB2 608 aa5.95□□□□□ -1.46
TMEM260-210ENST00000556422 FEZ2Q9UHY8 353 aaPredicted RBP5.95□□□□□ -1.46
TMEM260-210ENST00000556422 DDX49Q9Y6V7 483 aaKnown RBP5.95□□□□□ -1.46
TMEM260-210ENST00000556422 MYH15Q9Y2K3 1946 aa5.95□□□□□ -1.46
TMEM260-210ENST00000556422 CDHR2Q9BYE9 1310 aa5.95□□□□□ -1.46
TMEM260-210ENST00000556422 GOLGA6L22H0YM25 854 aa5.95□□□□□ -1.46
TMEM260-210ENST00000556422 CCP110O43303 1012 aa5.95□□□□□ -1.46
TMEM260-210ENST00000556422 CREB3O43889 395 aa5.95□□□□□ -1.46
TMEM260-210ENST00000556422 PRIM1P49642 420 aaKnown RBP5.95□□□□□ -1.46
TMEM260-210ENST00000556422 MKRN4PQ13434 485 aaPredicted RBP5.95□□□□□ -1.46
TMEM260-210ENST00000556422 FAM210AQ96ND0 272 aa5.95□□□□□ -1.46
TMEM260-210ENST00000556422 NOL10Q9BSC4 688 aaKnown RBP5.95□□□□□ -1.46
TMEM260-210ENST00000556422 TOMM22Q9NS69 142 aa5.95□□□□□ -1.46
TMEM260-210ENST00000556422 TPCN1Q9ULQ1 816 aa5.95□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 622.4 ms