RNA–Protein interactions for RNA: ENST00000555854.1

VIPAS39-207, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 5

Gene VIPAS39, Length 444 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-207ENST00000555854 SMC4Q9NTJ3 1288 aa11.76□□□□□ -0.53
VIPAS39-207ENST00000555854 JAG2Q9Y219 1238 aa11.76□□□□□ -0.53
VIPAS39-207ENST00000555854 MYO3BQ8WXR4 1341 aa11.76□□□□□ -0.53
VIPAS39-207ENST00000555854 SSC5DA1L4H1 1573 aa11.75□□□□□ -0.53
VIPAS39-207ENST00000555854 MAP2K1Q02750 393 aaPredicted RBP11.75□□□□□ -0.53
VIPAS39-207ENST00000555854 LRRC24Q50LG9 513 aa11.75□□□□□ -0.53
VIPAS39-207ENST00000555854 TTLL5Q6EMB2 1281 aa11.75□□□□□ -0.53
VIPAS39-207ENST00000555854 SULF1Q8IWU6 871 aa11.75□□□□□ -0.53
VIPAS39-207ENST00000555854 VGLL2Q8N8G2 317 aa11.75□□□□□ -0.53
VIPAS39-207ENST00000555854 KLHDC4Q8TBB5 520 aa11.75□□□□□ -0.53
VIPAS39-207ENST00000555854 AIDAQ96BJ3 306 aa11.75□□□□□ -0.53
VIPAS39-207ENST00000555854 TSKSQ9UJT2 592 aa11.75□□□□□ -0.53
VIPAS39-207ENST00000555854 RIPOR2Q9Y4F9 1068 aa11.75□□□□□ -0.53
VIPAS39-207ENST00000555854 ECM29Q5VYK3 1845 aa11.74□□□□□ -0.53
VIPAS39-207ENST00000555854 MAP2K2P36507 400 aa11.74□□□□□ -0.53
VIPAS39-207ENST00000555854 RFX5P48382 616 aaPredicted RBP11.74□□□□□ -0.53
VIPAS39-207ENST00000555854 TAF7LQ5H9L4 462 aa11.74□□□□□ -0.53
VIPAS39-207ENST00000555854 PRAMEF18Q5VWM3 479 aa11.74□□□□□ -0.53
VIPAS39-207ENST00000555854 MOB2Q70IA6 237 aa11.74□□□□□ -0.53
VIPAS39-207ENST00000555854 CNNM1Q9NRU3 951 aa11.74□□□□□ -0.53
VIPAS39-207ENST00000555854 PLIN1O60240 522 aa11.73□□□□□ -0.53
VIPAS39-207ENST00000555854 COL1A1P02452 1464 aaPredicted RBP11.73□□□□□ -0.53
VIPAS39-207ENST00000555854 SLC10A3P09131 477 aa11.73□□□□□ -0.53
VIPAS39-207ENST00000555854 GYG1P46976 350 aa11.73□□□□□ -0.53
VIPAS39-207ENST00000555854 BRPF1P55201 1214 aaPredicted RBP11.73□□□□□ -0.53
VIPAS39-207ENST00000555854 RGMBQ6NW40 437 aa11.73□□□□□ -0.53
VIPAS39-207ENST00000555854 HTTP42858 3142 aa11.72□□□□□ -0.53
VIPAS39-207ENST00000555854 FAM205AQ6ZU69 1335 aa11.72□□□□□ -0.53
VIPAS39-207ENST00000555854 CT47B1P0C2W7 299 aaPredicted RBP11.72□□□□□ -0.53
VIPAS39-207ENST00000555854 RARSP54136 660 aaKnown RBP11.72□□□□□ -0.53
VIPAS39-207ENST00000555854 NOGQ13253 232 aa11.72□□□□□ -0.53
VIPAS39-207ENST00000555854 UBE4AQ14139 1066 aa11.72□□□□□ -0.53
VIPAS39-207ENST00000555854 ZNF804AQ7Z570 1209 aa11.72□□□□□ -0.53
VIPAS39-207ENST00000555854 RASAL3Q86YV0 1011 aa11.72□□□□□ -0.53
VIPAS39-207ENST00000555854 TDRD7Q8NHU6 1098 aaKnown RBP11.72□□□□□ -0.53
VIPAS39-207ENST00000555854 FAM84BQ96KN1 310 aaPredicted RBP11.72□□□□□ -0.53
VIPAS39-207ENST00000555854 NOB1Q9ULX3 412 aaKnown RBP11.72□□□□□ -0.53
VIPAS39-207ENST00000555854 TNNQ9UQP3 1299 aa11.72□□□□□ -0.53
VIPAS39-207ENST00000555854 F8W031 263 aaPredicted RBP11.71□□□□□ -0.53
VIPAS39-207ENST00000555854 FKBP1AP62942 108 aaKnown RBP11.71□□□□□ -0.53
VIPAS39-207ENST00000555854 GRIK5Q16478 980 aa11.71□□□□□ -0.53
VIPAS39-207ENST00000555854 OGFOD1Q8N543 542 aa11.71□□□□□ -0.53
VIPAS39-207ENST00000555854 C2orf69Q8N8R5 385 aa11.71□□□□□ -0.53
VIPAS39-207ENST00000555854 MTMR14Q8NCE2 650 aa11.71□□□□□ -0.53
VIPAS39-207ENST00000555854 MROH5Q6ZUA9 1318 aa11.7□□□□□ -0.54
VIPAS39-207ENST00000555854 SPDYE2BA6NHP3 402 aa11.7□□□□□ -0.54
VIPAS39-207ENST00000555854 SPDYE6P0CI01 402 aa11.7□□□□□ -0.54
VIPAS39-207ENST00000555854 FGFR2P21802 821 aa11.7□□□□□ -0.54
VIPAS39-207ENST00000555854 PTPN12Q05209 780 aaKnown RBP11.7□□□□□ -0.54
VIPAS39-207ENST00000555854 MIER1Q8N108 512 aa11.7□□□□□ -0.54
VIPAS39-207ENST00000555854 FZD1Q9UP38 647 aa11.7□□□□□ -0.54
VIPAS39-207ENST00000555854 OTOFQ9HC10 1997 aa11.69□□□□□ -0.54
VIPAS39-207ENST00000555854 PDE8BO95263 885 aa11.69□□□□□ -0.54
VIPAS39-207ENST00000555854 HIBADHP31937 336 aaKnown RBP11.69□□□□□ -0.54
VIPAS39-207ENST00000555854 MMP14P50281 582 aa11.69□□□□□ -0.54
VIPAS39-207ENST00000555854 ZNF157P51786 506 aaPredicted RBP11.69□□□□□ -0.54
VIPAS39-207ENST00000555854 FKBP1BP68106 108 aa11.69□□□□□ -0.54
VIPAS39-207ENST00000555854 KIF23Q02241 960 aaPredicted RBP11.69□□□□□ -0.54
VIPAS39-207ENST00000555854 CFAP100Q494V2 611 aa11.69□□□□□ -0.54
VIPAS39-207ENST00000555854 METTL24Q5JXM2 366 aa11.69□□□□□ -0.54
VIPAS39-207ENST00000555854 ATG9AQ7Z3C6 839 aa11.69□□□□□ -0.54
VIPAS39-207ENST00000555854 FBXO33Q7Z6M2 555 aa11.69□□□□□ -0.54
VIPAS39-207ENST00000555854 MEIS3Q99687 375 aa11.69□□□□□ -0.54
VIPAS39-207ENST00000555854 HDAC9Q9UKV0 1011 aa11.69□□□□□ -0.54
VIPAS39-207ENST00000555854 IQSEC3Q9UPP2 1182 aaPredicted RBP11.69□□□□□ -0.54
VIPAS39-207ENST00000555854 CASP8AP2Q9UKL3 1982 aa11.68□□□□□ -0.54
VIPAS39-207ENST00000555854 CLRN2A0PK11 232 aa11.68□□□□□ -0.54
VIPAS39-207ENST00000555854 UBE2Q2LH0YL09 131 aa11.68□□□□□ -0.54
VIPAS39-207ENST00000555854 MFSD14BQ5SR56 506 aa11.68□□□□□ -0.54
VIPAS39-207ENST00000555854 APOBEC3FQ8IUX4 373 aaKnown RBP11.68□□□□□ -0.54
VIPAS39-207ENST00000555854 CDAN1Q8IWY9 1227 aa11.68□□□□□ -0.54
VIPAS39-207ENST00000555854 PRMT6Q96LA8 375 aaPredicted RBP11.68□□□□□ -0.54
VIPAS39-207ENST00000555854 LRRFIP2Q9Y608 721 aaKnown RBP11.68□□□□□ -0.54
VIPAS39-207ENST00000555854 LAMB1P07942 1786 aa11.68□□□□□ -0.54
VIPAS39-207ENST00000555854 EYA2O00167 538 aa11.67□□□□□ -0.54
VIPAS39-207ENST00000555854 CA12O43570 354 aa11.67□□□□□ -0.54
VIPAS39-207ENST00000555854 BCAMP50895 628 aa11.67□□□□□ -0.54
VIPAS39-207ENST00000555854 DLGAP5Q15398 846 aa11.67□□□□□ -0.54
VIPAS39-207ENST00000555854 CCDC102AQ96A19 550 aa11.67□□□□□ -0.54
VIPAS39-207ENST00000555854 CSRNP1Q96S65 589 aa11.67□□□□□ -0.54
VIPAS39-207ENST00000555854 API5Q9BZZ5 524 aaKnown RBP11.67□□□□□ -0.54
VIPAS39-207ENST00000555854 KIF16BQ96L93 1317 aa11.66□□□□□ -0.54
VIPAS39-207ENST00000555854 BCAR3O75815 825 aa11.66□□□□□ -0.54
VIPAS39-207ENST00000555854 UBTFL1P0CB47 393 aaPredicted RBP11.66□□□□□ -0.54
VIPAS39-207ENST00000555854 TRIM27P14373 513 aa11.66□□□□□ -0.54
VIPAS39-207ENST00000555854 PUM3Q15397 648 aaKnown RBP11.66□□□□□ -0.54
VIPAS39-207ENST00000555854 INTS3Q68E01 1043 aaKnown RBP11.66□□□□□ -0.54
VIPAS39-207ENST00000555854 BEGAINQ9BUH8 593 aa11.66□□□□□ -0.54
VIPAS39-207ENST00000555854 DEFB129Q9H1M3 183 aa11.66□□□□□ -0.54
VIPAS39-207ENST00000555854 RNF186Q9NXI6 227 aa11.66□□□□□ -0.54
VIPAS39-207ENST00000555854 TTF2Q9UNY4 1162 aaKnown RBP11.66□□□□□ -0.54
VIPAS39-207ENST00000555854 PA2G4Q9UQ80 394 aaKnown RBP11.66□□□□□ -0.54
VIPAS39-207ENST00000555854 MYH13Q9UKX3 1938 aa11.66□□□□□ -0.54
VIPAS39-207ENST00000555854 AKAP11Q9UKA4 1901 aa11.65□□□□□ -0.54
VIPAS39-207ENST00000555854 CHAF1AQ13111 956 aaPredicted RBP11.65□□□□□ -0.54
VIPAS39-207ENST00000555854 PRKG1Q13976 671 aa11.65□□□□□ -0.54
VIPAS39-207ENST00000555854 MAP3K11Q16584 847 aa11.65□□□□□ -0.54
VIPAS39-207ENST00000555854 SPDYE2Q495Y8 402 aa11.65□□□□□ -0.54
VIPAS39-207ENST00000555854 LDLRAD1Q5T700 205 aa11.65□□□□□ -0.54
VIPAS39-207ENST00000555854 SIL1Q9H173 461 aa11.65□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms