RNA–Protein interactions for RNA: ENST00000555535.1

SRP54-207, Transcript of signal recognition particle 54, humanhuman

TSL 4

Gene SRP54, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-207ENST00000555535 TBC1D32Q96NH3 1257 aa7.73□□□□□ -1.17
SRP54-207ENST00000555535 KRTAP4-5Q9BYR2 181 aa7.73□□□□□ -1.17
SRP54-207ENST00000555535 KSR1Q8IVT5 923 aa7.72□□□□□ -1.17
SRP54-207ENST00000555535 FAM200AQ8TCP9 573 aa7.72□□□□□ -1.17
SRP54-207ENST00000555535 SLC7A3Q8WY07 619 aa7.72□□□□□ -1.17
SRP54-207ENST00000555535 SLC5A6Q9Y289 635 aa7.72□□□□□ -1.17
SRP54-207ENST00000555535 SLC24A1O60721 1099 aa7.71□□□□□ -1.18
SRP54-207ENST00000555535 ZNF124Q15973 351 aa7.71□□□□□ -1.18
SRP54-207ENST00000555535 PDE12Q6L8Q7 609 aaKnown RBP7.71□□□□□ -1.18
SRP54-207ENST00000555535 SLC38A3Q99624 504 aa7.71□□□□□ -1.18
SRP54-207ENST00000555535 PPP1R12CQ9BZL4 782 aa7.71□□□□□ -1.18
SRP54-207ENST00000555535 FKBP5Q13451 457 aaPredicted RBP7.7□□□□□ -1.18
SRP54-207ENST00000555535 ATG4DQ86TL0 474 aaPredicted RBP7.7□□□□□ -1.18
SRP54-207ENST00000555535 EZH1Q92800 747 aaPredicted RBP7.7□□□□□ -1.18
SRP54-207ENST00000555535 PRKAG2Q9UGJ0 569 aa7.7□□□□□ -1.18
SRP54-207ENST00000555535 PLCL1Q15111 1095 aa7.69□□□□□ -1.18
SRP54-207ENST00000555535 EXOSC6Q5RKV6 272 aaKnown RBP7.69□□□□□ -1.18
SRP54-207ENST00000555535 BHLHE22Q8NFJ8 381 aaPredicted RBP7.69□□□□□ -1.18
SRP54-207ENST00000555535 PDE2AO00408 941 aaPredicted RBP7.68□□□□□ -1.18
SRP54-207ENST00000555535 ZAP70P43403 619 aa7.68□□□□□ -1.18
SRP54-207ENST00000555535 CCER1Q8TC90 406 aaPredicted RBP7.68□□□□□ -1.18
SRP54-207ENST00000555535 FBLIM1Q8WUP2 373 aa7.68□□□□□ -1.18
SRP54-207ENST00000555535 TMEM40Q8WWA1 233 aa7.68□□□□□ -1.18
SRP54-207ENST00000555535 SOX17Q9H6I2 414 aaPredicted RBP7.68□□□□□ -1.18
SRP54-207ENST00000555535 SOX13Q9UN79 622 aa7.68□□□□□ -1.18
SRP54-207ENST00000555535 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.68□□□□□ -1.18
SRP54-207ENST00000555535 RPLP1P05386 114 aaKnown RBP7.67□□□□□ -1.18
SRP54-207ENST00000555535 ADMP35318 185 aa7.67□□□□□ -1.18
SRP54-207ENST00000555535 MAP7Q14244 749 aa7.67□□□□□ -1.18
SRP54-207ENST00000555535 SWI5Q1ZZU3 235 aa7.67□□□□□ -1.18
SRP54-207ENST00000555535 ZNF792Q3KQV3 632 aa7.67□□□□□ -1.18
SRP54-207ENST00000555535 CDPF1Q6NVV7 123 aa7.67□□□□□ -1.18
SRP54-207ENST00000555535 MISP3Q96FF7 219 aa7.67□□□□□ -1.18
SRP54-207ENST00000555535 ZC3H7BQ9UGR2 993 aaKnown RBP7.67□□□□□ -1.18
SRP54-207ENST00000555535 LOC100289279A0A1B0GTE1 492 aa7.66□□□□□ -1.18
SRP54-207ENST00000555535 CYP2E1P05181 493 aaPredicted RBP7.66□□□□□ -1.18
SRP54-207ENST00000555535 IKBKEQ14164 716 aa7.66□□□□□ -1.18
SRP54-207ENST00000555535 ABTB2Q8N961 1025 aa7.66□□□□□ -1.18
SRP54-207ENST00000555535 USP26Q9BXU7 913 aa7.66□□□□□ -1.18
SRP54-207ENST00000555535 ELP3Q9H9T3 547 aa7.66□□□□□ -1.18
SRP54-207ENST00000555535 DZANK1Q9NVP4 752 aa7.66□□□□□ -1.18
SRP54-207ENST00000555535 SALL4Q9UJQ4 1053 aa7.66□□□□□ -1.18
SRP54-207ENST00000555535 CARMIL2Q6F5E8 1435 aa7.66□□□□□ -1.18
SRP54-207ENST00000555535 FAM170BA6NMN3 283 aa7.65□□□□□ -1.18
SRP54-207ENST00000555535 SOX4Q06945 474 aaPredicted RBP7.65□□□□□ -1.18
SRP54-207ENST00000555535 SHISA5Q8N114 240 aa7.65□□□□□ -1.18
SRP54-207ENST00000555535 C2CD4AQ8NCU7 369 aaPredicted RBP7.65□□□□□ -1.18
SRP54-207ENST00000555535 GPR152Q8TDT2 470 aa7.65□□□□□ -1.18
SRP54-207ENST00000555535 BCL7CQ8WUZ0 217 aaPredicted RBP7.65□□□□□ -1.18
SRP54-207ENST00000555535 BSNDQ8WZ55 320 aa7.65□□□□□ -1.18
SRP54-207ENST00000555535 PMEPA1Q969W9 287 aa7.65□□□□□ -1.18
SRP54-207ENST00000555535 LRRC4CQ9HCJ2 640 aa7.65□□□□□ -1.18
SRP54-207ENST00000555535 NFKBIEO00221 500 aa7.64□□□□□ -1.19
SRP54-207ENST00000555535 LMOD1P29536 600 aaPredicted RBP7.64□□□□□ -1.19
SRP54-207ENST00000555535 ZNF438Q7Z4V0 828 aa7.64□□□□□ -1.19
SRP54-207ENST00000555535 TMEM102Q8N9M5 508 aaPredicted RBP7.64□□□□□ -1.19
SRP54-207ENST00000555535 FAM168AQ92567 244 aa7.64□□□□□ -1.19
SRP54-207ENST00000555535 GATA6Q92908 595 aa7.64□□□□□ -1.19
SRP54-207ENST00000555535 SAP130Q9H0E3 1048 aa7.64□□□□□ -1.19
SRP54-207ENST00000555535 TNFRSF10BO14763 440 aa7.63□□□□□ -1.19
SRP54-207ENST00000555535 DRD2P14416 443 aa7.63□□□□□ -1.19
SRP54-207ENST00000555535 CES1P23141 567 aa7.63□□□□□ -1.19
SRP54-207ENST00000555535 HP1BP3Q5SSJ5 553 aaPredicted RBP7.63□□□□□ -1.19
SRP54-207ENST00000555535 CALR3Q96L12 384 aaKnown RBP7.63□□□□□ -1.19
SRP54-207ENST00000555535 SOX1O00570 391 aaPredicted RBP7.62□□□□□ -1.19
SRP54-207ENST00000555535 FAM84AQ96KN4 292 aa7.62□□□□□ -1.19
SRP54-207ENST00000555535 STIM2Q9P246 746 aa7.62□□□□□ -1.19
SRP54-207ENST00000555535 KANSL3Q9P2N6 904 aa7.62□□□□□ -1.19
SRP54-207ENST00000555535 ACIN1Q9UKV3 1341 aaKnown RBP7.61□□□□□ -1.19
SRP54-207ENST00000555535 TMEM132AQ24JP5 1023 aa7.61□□□□□ -1.19
SRP54-207ENST00000555535 LCE5AQ5TCM9 118 aa7.61□□□□□ -1.19
SRP54-207ENST00000555535 TOX2Q96NM4 488 aa7.61□□□□□ -1.19
SRP54-207ENST00000555535 TMEM63CQ9P1W3 806 aa7.61□□□□□ -1.19
SRP54-207ENST00000555535 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP7.6□□□□□ -1.19
SRP54-207ENST00000555535 FAM26DQ5JW98 314 aa7.6□□□□□ -1.19
SRP54-207ENST00000555535 XKR5Q6UX68 686 aa7.6□□□□□ -1.19
SRP54-207ENST00000555535 ZNF765Q7L2R6 523 aa7.6□□□□□ -1.19
SRP54-207ENST00000555535 GLIS3Q8NEA6 775 aa7.6□□□□□ -1.19
SRP54-207ENST00000555535 PRIMPOLQ96LW4 560 aa7.6□□□□□ -1.19
SRP54-207ENST00000555535 ZFYVE1Q9HBF4 777 aa7.6□□□□□ -1.19
SRP54-207ENST00000555535 KRTAP9-7A8MTY7 169 aa7.59□□□□□ -1.19
SRP54-207ENST00000555535 FUT4P22083 530 aa7.59□□□□□ -1.19
SRP54-207ENST00000555535 OCLNQ16625 522 aa7.59□□□□□ -1.19
SRP54-207ENST00000555535 VN1R5Q7Z5H4 357 aa7.59□□□□□ -1.19
SRP54-207ENST00000555535 RC3H2Q9HBD1 1191 aaKnown RBP7.59□□□□□ -1.19
SRP54-207ENST00000555535 FAM53CQ9NYF3 392 aa7.59□□□□□ -1.19
SRP54-207ENST00000555535 CNTN3Q9P232 1028 aa7.59□□□□□ -1.19
SRP54-207ENST00000555535 DLGAP3O95886 979 aa7.58□□□□□ -1.2
SRP54-207ENST00000555535 ADH5P11766 374 aa7.58□□□□□ -1.2
SRP54-207ENST00000555535 PCSK2P16519 638 aa7.58□□□□□ -1.2
SRP54-207ENST00000555535 RFX1P22670 979 aa7.58□□□□□ -1.2
SRP54-207ENST00000555535 CYP27C1Q4G0S4 372 aa7.58□□□□□ -1.2
SRP54-207ENST00000555535 HGSNATQ68CP4 663 aa7.58□□□□□ -1.2
SRP54-207ENST00000555535 PROSER2Q86WR7 435 aaPredicted RBP7.58□□□□□ -1.2
SRP54-207ENST00000555535 ZSCAN18Q8TBC5 510 aaPredicted RBP7.58□□□□□ -1.2
SRP54-207ENST00000555535 NXPE3Q969Y0 559 aa7.58□□□□□ -1.2
SRP54-207ENST00000555535 KRTAP17-1Q9BYP8 105 aa7.58□□□□□ -1.2
SRP54-207ENST00000555535 NOVA2Q9UNW9 492 aaKnown RBP7.58□□□□□ -1.2
SRP54-207ENST00000555535 PRMT3O60678 531 aa7.57□□□□□ -1.2
SRP54-207ENST00000555535 NFICP08651 508 aa7.57□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms