RNA–Protein interactions for RNA: ENST00000555402.1

VRK1-205, Transcript of vaccinia related kinase 1, humanhuman

TSL 3

Gene VRK1, Length 415 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-205ENST00000555402 PDE12Q6L8Q7 609 aaKnown RBP9.85□□□□□ -0.83
VRK1-205ENST00000555402 CNTN3Q9P232 1028 aa9.85□□□□□ -0.83
VRK1-205ENST00000555402 STIM2Q9P246 746 aa9.85□□□□□ -0.83
VRK1-205ENST00000555402 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP9.85□□□□□ -0.83
VRK1-205ENST00000555402 PRNPP04156 253 aa9.84□□□□□ -0.83
VRK1-205ENST00000555402 RXRBP28702 533 aa9.84□□□□□ -0.83
VRK1-205ENST00000555402 ARL4DP49703 201 aa9.84□□□□□ -0.83
VRK1-205ENST00000555402 CPSF6Q16630 551 aaKnown RBP eCLIP9.84□□□□□ -0.83
VRK1-205ENST00000555402 ASIC4Q96FT7 647 aa9.84□□□□□ -0.83
VRK1-205ENST00000555402 NUTM2GQ5VZR2 741 aa9.83□□□□□ -0.84
VRK1-205ENST00000555402 HGSNATQ68CP4 663 aa9.83□□□□□ -0.84
VRK1-205ENST00000555402 NFXL1Q6ZNB6 911 aa9.83□□□□□ -0.84
VRK1-205ENST00000555402 SHISA5Q8N114 240 aa9.83□□□□□ -0.84
VRK1-205ENST00000555402 C12orf50Q8NA57 414 aaPredicted RBP9.83□□□□□ -0.84
VRK1-205ENST00000555402 FBXL18Q96ME1 805 aa9.83□□□□□ -0.84
VRK1-205ENST00000555402 CXXC1Q9P0U4 656 aaPredicted RBP9.83□□□□□ -0.84
VRK1-205ENST00000555402 ZMIZ1Q9ULJ6 1067 aa9.83□□□□□ -0.84
VRK1-205ENST00000555402 PDE2AO00408 941 aaPredicted RBP9.82□□□□□ -0.84
VRK1-205ENST00000555402 ACPPP15309 386 aa9.82□□□□□ -0.84
VRK1-205ENST00000555402 C19orf57Q0VDD7 668 aa9.82□□□□□ -0.84
VRK1-205ENST00000555402 ZNF438Q7Z4V0 828 aa9.82□□□□□ -0.84
VRK1-205ENST00000555402 TP53INP2Q8IXH6 220 aa9.82□□□□□ -0.84
VRK1-205ENST00000555402 POU5F2Q8N7G0 328 aa9.82□□□□□ -0.84
VRK1-205ENST00000555402 ABTB2Q8N961 1025 aa9.82□□□□□ -0.84
VRK1-205ENST00000555402 DZANK1Q9NVP4 752 aa9.82□□□□□ -0.84
VRK1-205ENST00000555402 C8AP07357 584 aa9.81□□□□□ -0.84
VRK1-205ENST00000555402 ELOAQ14241 798 aaKnown RBP9.81□□□□□ -0.84
VRK1-205ENST00000555402 NFKBIBQ15653 356 aa9.81□□□□□ -0.84
VRK1-205ENST00000555402 VSIG10LQ86VR7 867 aa9.81□□□□□ -0.84
VRK1-205ENST00000555402 SMG8Q8ND04 991 aaKnown RBP9.81□□□□□ -0.84
VRK1-205ENST00000555402 NUDT16Q96DE0 195 aaKnown RBP9.81□□□□□ -0.84
VRK1-205ENST00000555402 TMPRSS13Q9BYE2 586 aa9.81□□□□□ -0.84
VRK1-205ENST00000555402 SOX13Q9UN79 622 aa9.81□□□□□ -0.84
VRK1-205ENST00000555402 TRPA1O75762 1119 aa9.8□□□□□ -0.84
VRK1-205ENST00000555402 PDIA4P13667 645 aaKnown RBP9.8□□□□□ -0.84
VRK1-205ENST00000555402 COL19A1Q14993 1142 aa9.8□□□□□ -0.84
VRK1-205ENST00000555402 SUGCTQ9HAC7 445 aa9.8□□□□□ -0.84
VRK1-205ENST00000555402 FAM95CA0A1B0GW59 222 aa9.79□□□□□ -0.84
VRK1-205ENST00000555402 TIAF1O95411 115 aa9.79□□□□□ -0.84
VRK1-205ENST00000555402 CES1P23141 567 aa9.79□□□□□ -0.84
VRK1-205ENST00000555402 C1orf127Q8N9H9 656 aa9.79□□□□□ -0.84
VRK1-205ENST00000555402 HHIPQ96QV1 700 aa9.79□□□□□ -0.84
VRK1-205ENST00000555402 KRTAP4-9Q9BYQ8 210 aa9.79□□□□□ -0.84
VRK1-205ENST00000555402 CYP4F12Q9HCS2 524 aa9.79□□□□□ -0.84
VRK1-205ENST00000555402 SOX1O00570 391 aaPredicted RBP9.78□□□□□ -0.84
VRK1-205ENST00000555402 ITGB5P18084 799 aa9.78□□□□□ -0.84
VRK1-205ENST00000555402 PAOXQ6QHF9 649 aa9.78□□□□□ -0.84
VRK1-205ENST00000555402 XKR5Q6UX68 686 aa9.78□□□□□ -0.84
VRK1-205ENST00000555402 STK32AQ8WU08 396 aa9.78□□□□□ -0.84
VRK1-205ENST00000555402 METTL22Q9BUU2 404 aaPredicted RBP9.78□□□□□ -0.84
VRK1-205ENST00000555402 CYP26A1O43174 497 aa9.77□□□□□ -0.85
VRK1-205ENST00000555402 JUNBP17275 347 aaPredicted RBP9.77□□□□□ -0.85
VRK1-205ENST00000555402 USP11P51784 963 aa9.77□□□□□ -0.85
VRK1-205ENST00000555402 TMEM102Q8N9M5 508 aaPredicted RBP9.77□□□□□ -0.85
VRK1-205ENST00000555402 FBLIM1Q8WUP2 373 aa9.77□□□□□ -0.85
VRK1-205ENST00000555402 BSDC1Q9NW68 430 aaPredicted RBP9.77□□□□□ -0.85
VRK1-205ENST00000555402 DRD2P14416 443 aa9.76□□□□□ -0.85
VRK1-205ENST00000555402 CDPF1Q6NVV7 123 aa9.76□□□□□ -0.85
VRK1-205ENST00000555402 USP26Q9BXU7 913 aa9.76□□□□□ -0.85
VRK1-205ENST00000555402 LOC100289279A0A1B0GTE1 492 aa9.75□□□□□ -0.85
VRK1-205ENST00000555402 DLGAP3O95886 979 aa9.75□□□□□ -0.85
VRK1-205ENST00000555402 RPLP1P05386 114 aaKnown RBP9.75□□□□□ -0.85
VRK1-205ENST00000555402 ADMP35318 185 aa9.75□□□□□ -0.85
VRK1-205ENST00000555402 IKBKEQ14164 716 aa9.75□□□□□ -0.85
VRK1-205ENST00000555402 EXOSC6Q5RKV6 272 aaKnown RBP9.75□□□□□ -0.85
VRK1-205ENST00000555402 ATCAYQ86WG3 371 aa9.75□□□□□ -0.85
VRK1-205ENST00000555402 BSNDQ8WZ55 320 aa9.75□□□□□ -0.85
VRK1-205ENST00000555402 NXPE3Q969Y0 559 aa9.75□□□□□ -0.85
VRK1-205ENST00000555402 VN1R5Q7Z5H4 357 aa9.74□□□□□ -0.85
VRK1-205ENST00000555402 TBC1D32Q96NH3 1257 aa9.74□□□□□ -0.85
VRK1-205ENST00000555402 ZAR1Q86SH2 424 aa9.73□□□□□ -0.85
VRK1-205ENST00000555402 PMEPA1Q969W9 287 aa9.73□□□□□ -0.85
VRK1-205ENST00000555402 PRKAG2Q9UGJ0 569 aa9.73□□□□□ -0.85
VRK1-205ENST00000555402 C2CD4AQ8NCU7 369 aaPredicted RBP9.72□□□□□ -0.85
VRK1-205ENST00000555402 AGBL5Q8NDL9 886 aa9.72□□□□□ -0.85
VRK1-205ENST00000555402 FLCNQ8NFG4 579 aa9.72□□□□□ -0.85
VRK1-205ENST00000555402 GGNBP2Q9H3C7 697 aa9.72□□□□□ -0.85
VRK1-205ENST00000555402 TRIM26Q12899 539 aaPredicted RBP9.71□□□□□ -0.86
VRK1-205ENST00000555402 EDEM1Q92611 657 aa9.71□□□□□ -0.86
VRK1-205ENST00000555402 EZH1Q92800 747 aaPredicted RBP9.71□□□□□ -0.86
VRK1-205ENST00000555402 OSMRQ99650 979 aa9.71□□□□□ -0.86
VRK1-205ENST00000555402 CHRDQ9H2X0 955 aa9.71□□□□□ -0.86
VRK1-205ENST00000555402 SOX17Q9H6I2 414 aaPredicted RBP9.71□□□□□ -0.86
VRK1-205ENST00000555402 PAK6Q9NQU5 681 aaPredicted RBP9.71□□□□□ -0.86
VRK1-205ENST00000555402 PPP1R15AO75807 674 aaPredicted RBP9.7□□□□□ -0.86
VRK1-205ENST00000555402 SOX4Q06945 474 aaPredicted RBP9.7□□□□□ -0.86
VRK1-205ENST00000555402 ZKSCAN3Q9BRR0 538 aa9.7□□□□□ -0.86
VRK1-205ENST00000555402 PODXL2Q9NZ53 605 aa9.7□□□□□ -0.86
VRK1-205ENST00000555402 A6NHS1 94 aa9.69□□□□□ -0.86
VRK1-205ENST00000555402 FAM170BA6NMN3 283 aa9.69□□□□□ -0.86
VRK1-205ENST00000555402 TMEM164Q5U3C3 297 aa9.69□□□□□ -0.86
VRK1-205ENST00000555402 GATA6Q92908 595 aa9.69□□□□□ -0.86
VRK1-205ENST00000555402 YIPF2Q9BWQ6 316 aa9.69□□□□□ -0.86
VRK1-205ENST00000555402 PCSK2P16519 638 aa9.68□□□□□ -0.86
VRK1-205ENST00000555402 DNM1Q05193 864 aaKnown RBP9.68□□□□□ -0.86
VRK1-205ENST00000555402 C8orf34Q49A92 452 aa9.68□□□□□ -0.86
VRK1-205ENST00000555402 DUSP27Q5VZP5 1158 aa9.68□□□□□ -0.86
VRK1-205ENST00000555402 CLP1Q92989 425 aaKnown RBP9.68□□□□□ -0.86
VRK1-205ENST00000555402 ZC3H7BQ9UGR2 993 aaKnown RBP9.68□□□□□ -0.86
VRK1-205ENST00000555402 SEPT3Q9UH03 358 aa9.68□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms