RNA–Protein interactions for RNA: ENST00000554660.1

VPS33B-204, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 3

Gene VPS33B, Length 1,055 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-204ENST00000554660 DEFB129Q9H1M3 183 aa14.46□□□□□ -0.09
VPS33B-204ENST00000554660 TRIM17Q9Y577 477 aa14.46□□□□□ -0.09
VPS33B-204ENST00000554660 LAMB1P07942 1786 aa14.46□□□□□ -0.09
VPS33B-204ENST00000554660 POTEFA5A3E0 1075 aa14.45□□□□□ -0.1
VPS33B-204ENST00000554660 SNAP23O00161 211 aa14.45□□□□□ -0.1
VPS33B-204ENST00000554660 IGF2BP3O00425 579 aaKnown RBP eCLIP14.45□□□□□ -0.1
VPS33B-204ENST00000554660 KCNJ4P48050 445 aa14.45□□□□□ -0.1
VPS33B-204ENST00000554660 OTOP1Q7RTM1 612 aa14.45□□□□□ -0.1
VPS33B-204ENST00000554660 IFNL1Q8IU54 200 aa14.45□□□□□ -0.1
VPS33B-204ENST00000554660 CERS5Q8N5B7 392 aa14.45□□□□□ -0.1
VPS33B-204ENST00000554660 MPHOSPH8Q99549 860 aa14.45□□□□□ -0.1
VPS33B-204ENST00000554660 STK31Q9BXU1 1019 aa14.45□□□□□ -0.1
VPS33B-204ENST00000554660 ANKRD2Q9GZV1 360 aa14.45□□□□□ -0.1
VPS33B-204ENST00000554660 ECM29Q5VYK3 1845 aa14.45□□□□□ -0.1
VPS33B-204ENST00000554660 AOX1Q06278 1338 aa14.44□□□□□ -0.1
VPS33B-204ENST00000554660 CLRN2A0PK11 232 aa14.44□□□□□ -0.1
VPS33B-204ENST00000554660 MANSC4A6NHS7 340 aaPredicted RBP14.44□□□□□ -0.1
VPS33B-204ENST00000554660 F8W031 263 aaPredicted RBP14.44□□□□□ -0.1
VPS33B-204ENST00000554660 H7C1W4 665 aa14.44□□□□□ -0.1
VPS33B-204ENST00000554660 ALDH1A1P00352 501 aa14.44□□□□□ -0.1
VPS33B-204ENST00000554660 CHRNDQ07001 517 aa14.44□□□□□ -0.1
VPS33B-204ENST00000554660 DLGAP5Q15398 846 aa14.44□□□□□ -0.1
VPS33B-204ENST00000554660 WNK4Q96J92 1243 aa14.44□□□□□ -0.1
VPS33B-204ENST00000554660 CD209Q9NNX6 404 aa14.44□□□□□ -0.1
VPS33B-204ENST00000554660 JAG2Q9Y219 1238 aa14.44□□□□□ -0.1
VPS33B-204ENST00000554660 IRS2Q9Y4H2 1338 aa14.43□□□□□ -0.1
VPS33B-204ENST00000554660 MS4A1P11836 297 aa14.43□□□□□ -0.1
VPS33B-204ENST00000554660 MMP14P50281 582 aa14.43□□□□□ -0.1
VPS33B-204ENST00000554660 GCKRQ14397 625 aa14.43□□□□□ -0.1
VPS33B-204ENST00000554660 ERICH6Q7L0X2 663 aa14.43□□□□□ -0.1
VPS33B-204ENST00000554660 SLC10A4Q96EP9 437 aa14.43□□□□□ -0.1
VPS33B-204ENST00000554660 OTOFQ9HC10 1997 aa14.43□□□□□ -0.1
VPS33B-204ENST00000554660 RBBP6Q7Z6E9 1792 aaKnown RBP14.42□□□□□ -0.1
VPS33B-204ENST00000554660 TAF5LO75529 589 aa14.42□□□□□ -0.1
VPS33B-204ENST00000554660 ZBTB48P10074 688 aaPredicted RBP14.42□□□□□ -0.1
VPS33B-204ENST00000554660 GJA5P36382 358 aa14.42□□□□□ -0.1
VPS33B-204ENST00000554660 CASP7P55210 303 aa14.42□□□□□ -0.1
VPS33B-204ENST00000554660 MAP3K11Q16584 847 aa14.42□□□□□ -0.1
VPS33B-204ENST00000554660 CFAP100Q494V2 611 aa14.42□□□□□ -0.1
VPS33B-204ENST00000554660 HELBQ8NG08 1087 aaPredicted RBP14.42□□□□□ -0.1
VPS33B-204ENST00000554660 CD99L2Q8TCZ2 262 aa14.42□□□□□ -0.1
VPS33B-204ENST00000554660 PLA2G12BQ9BX93 195 aa14.42□□□□□ -0.1
VPS33B-204ENST00000554660 CHMP4AQ9BY43 222 aa14.42□□□□□ -0.1
VPS33B-204ENST00000554660 VEZTQ9HBM0 779 aa14.42□□□□□ -0.1
VPS33B-204ENST00000554660 PPP1R12BO60237 982 aaPredicted RBP14.41□□□□□ -0.1
VPS33B-204ENST00000554660 SLC4A2P04920 1241 aa14.41□□□□□ -0.1
VPS33B-204ENST00000554660 CRHR2Q13324 411 aa14.41□□□□□ -0.1
VPS33B-204ENST00000554660 TWISTNBQ3B726 338 aaPredicted RBP14.41□□□□□ -0.1
VPS33B-204ENST00000554660 GCC1Q96CN9 775 aa14.41□□□□□ -0.1
VPS33B-204ENST00000554660 PPP2R3BQ9Y5P8 575 aa14.41□□□□□ -0.1
VPS33B-204ENST00000554660 SPDYE2BA6NHP3 402 aa14.4□□□□□ -0.1
VPS33B-204ENST00000554660 CSF1RP07333 972 aa14.4□□□□□ -0.1
VPS33B-204ENST00000554660 SPDYE6P0CI01 402 aa14.4□□□□□ -0.1
VPS33B-204ENST00000554660 INHBEP58166 350 aa14.4□□□□□ -0.1
VPS33B-204ENST00000554660 CAP1Q01518 475 aa14.4□□□□□ -0.1
VPS33B-204ENST00000554660 FLIIQ13045 1269 aa14.4□□□□□ -0.1
VPS33B-204ENST00000554660 NBPF12Q5TAG4 269 aaPredicted RBP14.4□□□□□ -0.1
VPS33B-204ENST00000554660 MTMR14Q8NCE2 650 aa14.4□□□□□ -0.1
VPS33B-204ENST00000554660 PRMT6Q96LA8 375 aaPredicted RBP14.4□□□□□ -0.1
VPS33B-204ENST00000554660 ANKRD18BA2A2Z9 1011 aa14.39□□□□□ -0.11
VPS33B-204ENST00000554660 MYO1BO43795 1136 aa14.39□□□□□ -0.11
VPS33B-204ENST00000554660 FKBP5Q13451 457 aaPredicted RBP14.39□□□□□ -0.11
VPS33B-204ENST00000554660 HABP4Q5JVS0 413 aaKnown RBP14.39□□□□□ -0.11
VPS33B-204ENST00000554660 DNAAF4Q8WXU2 420 aa14.39□□□□□ -0.11
VPS33B-204ENST00000554660 ERO1AQ96HE7 468 aa14.39□□□□□ -0.11
VPS33B-204ENST00000554660 MYH16Q9H6N6 1097 aa14.39□□□□□ -0.11
VPS33B-204ENST00000554660 PTPN22Q9Y2R2 807 aa14.39□□□□□ -0.11
VPS33B-204ENST00000554660 CHMP3Q9Y3E7 222 aa14.39□□□□□ -0.11
VPS33B-204ENST00000554660 ZNF521Q96K83 1311 aa14.39□□□□□ -0.11
VPS33B-204ENST00000554660 RBM5P52756 815 aaKnown RBP eCLIP14.38□□□□□ -0.11
VPS33B-204ENST00000554660 RASA3Q14644 834 aa14.38□□□□□ -0.11
VPS33B-204ENST00000554660 SUPT20HL1Q3ZLR7 823 aa14.38□□□□□ -0.11
VPS33B-204ENST00000554660 INTS3Q68E01 1043 aaKnown RBP14.38□□□□□ -0.11
VPS33B-204ENST00000554660 ZNF804AQ7Z570 1209 aa14.38□□□□□ -0.11
VPS33B-204ENST00000554660 LINS1Q8NG48 757 aa14.38□□□□□ -0.11
VPS33B-204ENST00000554660 PTPN18Q99952 460 aa14.38□□□□□ -0.11
VPS33B-204ENST00000554660 ARAP2Q8WZ64 1704 aa14.38□□□□□ -0.11
VPS33B-204ENST00000554660 USP2O75604 605 aaPredicted RBP14.37□□□□□ -0.11
VPS33B-204ENST00000554660 IL1R1P14778 569 aa14.37□□□□□ -0.11
VPS33B-204ENST00000554660 EN2P19622 333 aaPredicted RBP14.37□□□□□ -0.11
VPS33B-204ENST00000554660 IREB2P48200 963 aaKnown RBP14.37□□□□□ -0.11
VPS33B-204ENST00000554660 IFIT5Q13325 482 aaKnown RBP14.37□□□□□ -0.11
VPS33B-204ENST00000554660 C15orf52Q6ZUT6 534 aaKnown RBP14.37□□□□□ -0.11
VPS33B-204ENST00000554660 CDAN1Q8IWY9 1227 aa14.37□□□□□ -0.11
VPS33B-204ENST00000554660 ANKRD13AQ8IZ07 590 aa14.37□□□□□ -0.11
VPS33B-204ENST00000554660 OPTNQ96CV9 577 aa14.37□□□□□ -0.11
VPS33B-204ENST00000554660 ELP3Q9H9T3 547 aa14.37□□□□□ -0.11
VPS33B-204ENST00000554660 EFCC1Q9HA90 598 aa14.37□□□□□ -0.11
VPS33B-204ENST00000554660 ANP32AP39687 249 aaKnown RBP14.36□□□□□ -0.11
VPS33B-204ENST00000554660 FOXO4P98177 505 aa14.36□□□□□ -0.11
VPS33B-204ENST00000554660 SP3Q02447 781 aa14.36□□□□□ -0.11
VPS33B-204ENST00000554660 CNKSR2Q8WXI2 1034 aa14.36□□□□□ -0.11
VPS33B-204ENST00000554660 ARMC5Q96C12 935 aa14.36□□□□□ -0.11
VPS33B-204ENST00000554660 UNCXA6NJT0 531 aa14.35□□□□□ -0.11
VPS33B-204ENST00000554660 PLIN1O60240 522 aa14.35□□□□□ -0.11
VPS33B-204ENST00000554660 FKBP1AP62942 108 aaKnown RBP14.35□□□□□ -0.11
VPS33B-204ENST00000554660 OTUD7BQ6GQQ9 843 aa14.35□□□□□ -0.11
VPS33B-204ENST00000554660 WWC1Q8IX03 1113 aa14.35□□□□□ -0.11
VPS33B-204ENST00000554660 ZNF594Q96JF6 807 aaPredicted RBP14.35□□□□□ -0.11
VPS33B-204ENST00000554660 ZSWIM8A7E2V4 1837 aa14.34□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms