RNA–Protein interactions for RNA: ENST00000554604.5

SHMT2-214, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 879 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-214ENST00000554604 PITPNM2Q9BZ72 1349 aa15.46■□□□□ 0.07
SHMT2-214ENST00000554604 HIBADHP31937 336 aaKnown RBP15.46■□□□□ 0.07
SHMT2-214ENST00000554604 NBPF9Q3BBW0 867 aa15.46■□□□□ 0.07
SHMT2-214ENST00000554604 VPS37DQ86XT2 251 aa15.46■□□□□ 0.07
SHMT2-214ENST00000554604 C2orf69Q8N8R5 385 aa15.46■□□□□ 0.07
SHMT2-214ENST00000554604 FRAT1Q92837 279 aaPredicted RBP15.46■□□□□ 0.07
SHMT2-214ENST00000554604 GBA2Q9HCG7 927 aaPredicted RBP15.46■□□□□ 0.07
SHMT2-214ENST00000554604 ECM29Q5VYK3 1845 aa15.45■□□□□ 0.06
SHMT2-214ENST00000554604 MYH13Q9UKX3 1938 aa15.45■□□□□ 0.06
SHMT2-214ENST00000554604 GYG1P46976 350 aa15.45■□□□□ 0.06
SHMT2-214ENST00000554604 HUNKP57058 714 aa15.45■□□□□ 0.06
SHMT2-214ENST00000554604 MAP2K1Q02750 393 aaPredicted RBP15.45■□□□□ 0.06
SHMT2-214ENST00000554604 HHIPL1Q96JK4 782 aa15.45■□□□□ 0.06
SHMT2-214ENST00000554604 JAG2Q9Y219 1238 aa15.45■□□□□ 0.06
SHMT2-214ENST00000554604 F8W031 263 aaPredicted RBP15.44■□□□□ 0.06
SHMT2-214ENST00000554604 WNT10BO00744 389 aa15.44■□□□□ 0.06
SHMT2-214ENST00000554604 SASH1O94885 1247 aa15.44■□□□□ 0.06
SHMT2-214ENST00000554604 PDE8BO95263 885 aa15.44■□□□□ 0.06
SHMT2-214ENST00000554604 CAVIN4Q5BKX8 364 aa15.44■□□□□ 0.06
SHMT2-214ENST00000554604 CDCA5Q96FF9 252 aa15.44■□□□□ 0.06
SHMT2-214ENST00000554604 FAM84BQ96KN1 310 aaPredicted RBP15.44■□□□□ 0.06
SHMT2-214ENST00000554604 BEGAINQ9BUH8 593 aa15.44■□□□□ 0.06
SHMT2-214ENST00000554604 LRRFIP2Q9Y608 721 aaKnown RBP15.44■□□□□ 0.06
SHMT2-214ENST00000554604 FOXN1O15353 648 aa15.43■□□□□ 0.06
SHMT2-214ENST00000554604 FRAT2O75474 233 aaPredicted RBP15.43■□□□□ 0.06
SHMT2-214ENST00000554604 DLGAP5Q15398 846 aa15.43■□□□□ 0.06
SHMT2-214ENST00000554604 COL13A1Q5TAT6 717 aaPredicted RBP15.43■□□□□ 0.06
SHMT2-214ENST00000554604 INTS3Q68E01 1043 aaKnown RBP15.43■□□□□ 0.06
SHMT2-214ENST00000554604 CERS5Q8N5B7 392 aa15.43■□□□□ 0.06
SHMT2-214ENST00000554604 MEIS3Q99687 375 aa15.43■□□□□ 0.06
SHMT2-214ENST00000554604 WBP1LQ9NX94 342 aa15.43■□□□□ 0.06
SHMT2-214ENST00000554604 SCAF8Q9UPN6 1271 aaKnown RBP15.43■□□□□ 0.06
SHMT2-214ENST00000554604 THSD7BQ9C0I4 1608 aa15.43■□□□□ 0.06
SHMT2-214ENST00000554604 EYA2O00167 538 aa15.42■□□□□ 0.06
SHMT2-214ENST00000554604 GNAI3P08754 354 aa15.42■□□□□ 0.06
SHMT2-214ENST00000554604 IFIT1P09914 478 aaKnown RBP15.42■□□□□ 0.06
SHMT2-214ENST00000554604 TRIM27P14373 513 aa15.42■□□□□ 0.06
SHMT2-214ENST00000554604 MAP2K2P36507 400 aa15.42■□□□□ 0.06
SHMT2-214ENST00000554604 CTCFP49711 727 aaPredicted RBP15.42■□□□□ 0.06
SHMT2-214ENST00000554604 FKBP1AP62942 108 aaKnown RBP15.42■□□□□ 0.06
SHMT2-214ENST00000554604 PTPN12Q05209 780 aaKnown RBP15.42■□□□□ 0.06
SHMT2-214ENST00000554604 AAMPQ13685 434 aa15.42■□□□□ 0.06
SHMT2-214ENST00000554604 PUM3Q15397 648 aaKnown RBP15.42■□□□□ 0.06
SHMT2-214ENST00000554604 ATF7IPQ6VMQ6 1270 aa15.42■□□□□ 0.06
SHMT2-214ENST00000554604 VGLL2Q8N8G2 317 aa15.42■□□□□ 0.06
SHMT2-214ENST00000554604 TDRD7Q8NHU6 1098 aaKnown RBP15.42■□□□□ 0.06
SHMT2-214ENST00000554604 SIL1Q9H173 461 aa15.42■□□□□ 0.06
SHMT2-214ENST00000554604 RBM19Q9Y4C8 960 aaKnown RBP15.42■□□□□ 0.06
SHMT2-214ENST00000554604 ARAP2Q8WZ64 1704 aa15.42■□□□□ 0.06
SHMT2-214ENST00000554604 FAM205AQ6ZU69 1335 aa15.42■□□□□ 0.06
SHMT2-214ENST00000554604 AOC2O75106 756 aa15.41■□□□□ 0.06
SHMT2-214ENST00000554604 RFX5P48382 616 aaPredicted RBP15.41■□□□□ 0.06
SHMT2-214ENST00000554604 RBM5P52756 815 aaKnown RBP eCLIP15.41■□□□□ 0.06
SHMT2-214ENST00000554604 MFSD14BQ5SR56 506 aa15.41■□□□□ 0.06
SHMT2-214ENST00000554604 APOBEC3FQ8IUX4 373 aaKnown RBP15.41■□□□□ 0.06
SHMT2-214ENST00000554604 CLUAP1Q96AJ1 413 aa15.41■□□□□ 0.06
SHMT2-214ENST00000554604 IQSEC3Q9UPP2 1182 aaPredicted RBP15.41■□□□□ 0.06
SHMT2-214ENST00000554604 TNNQ9UQP3 1299 aa15.41■□□□□ 0.06
SHMT2-214ENST00000554604 PAPPA2Q9BXP8 1791 aa15.4■□□□□ 0.06
SHMT2-214ENST00000554604 MYO1BO43795 1136 aa15.4■□□□□ 0.06
SHMT2-214ENST00000554604 MS4A1P11836 297 aa15.4■□□□□ 0.06
SHMT2-214ENST00000554604 SLC5A1P13866 664 aa15.4■□□□□ 0.06
SHMT2-214ENST00000554604 NF2P35240 595 aa15.4■□□□□ 0.06
SHMT2-214ENST00000554604 ZNF157P51786 506 aaPredicted RBP15.4■□□□□ 0.06
SHMT2-214ENST00000554604 IFFO2Q5TF58 517 aa15.4■□□□□ 0.06
SHMT2-214ENST00000554604 ZKSCAN2Q63HK3 967 aa15.4■□□□□ 0.06
SHMT2-214ENST00000554604 RGMBQ6NW40 437 aa15.4■□□□□ 0.06
SHMT2-214ENST00000554604 FBXO33Q7Z6M2 555 aa15.4■□□□□ 0.06
SHMT2-214ENST00000554604 FBXO3Q9UK99 471 aa15.4■□□□□ 0.06
SHMT2-214ENST00000554604 AKAP11Q9UKA4 1901 aa15.39■□□□□ 0.05
SHMT2-214ENST00000554604 FKBP1BP68106 108 aa15.39■□□□□ 0.05
SHMT2-214ENST00000554604 CHAF1AQ13111 956 aaPredicted RBP15.39■□□□□ 0.05
SHMT2-214ENST00000554604 NOGQ13253 232 aa15.39■□□□□ 0.05
SHMT2-214ENST00000554604 TTLL12Q14166 644 aaPredicted RBP15.39■□□□□ 0.05
SHMT2-214ENST00000554604 CFAP100Q494V2 611 aa15.39■□□□□ 0.05
SHMT2-214ENST00000554604 PRAMEF18Q5VWM3 479 aa15.39■□□□□ 0.05
SHMT2-214ENST00000554604 CENPQQ7L2Z9 268 aaPredicted RBP15.39■□□□□ 0.05
SHMT2-214ENST00000554604 MTMR14Q8NCE2 650 aa15.39■□□□□ 0.05
SHMT2-214ENST00000554604 CCDC102AQ96A19 550 aa15.39■□□□□ 0.05
SHMT2-214ENST00000554604 ZBED3Q96IU2 234 aaPredicted RBP15.39■□□□□ 0.05
SHMT2-214ENST00000554604 CEP126Q9P2H0 1117 aa15.39■□□□□ 0.05
SHMT2-214ENST00000554604 TTF2Q9UNY4 1162 aaKnown RBP15.39■□□□□ 0.05
SHMT2-214ENST00000554604 CIAO1O76071 339 aa15.38■□□□□ 0.05
SHMT2-214ENST00000554604 BCAMP50895 628 aa15.38■□□□□ 0.05
SHMT2-214ENST00000554604 ATG9AQ7Z3C6 839 aa15.38■□□□□ 0.05
SHMT2-214ENST00000554604 TNS4Q8IZW8 715 aa15.38■□□□□ 0.05
SHMT2-214ENST00000554604 TBC1D22AQ8WUA7 517 aa15.38■□□□□ 0.05
SHMT2-214ENST00000554604 LPIN2Q92539 896 aa15.38■□□□□ 0.05
SHMT2-214ENST00000554604 SPDYE2BA6NHP3 402 aa15.37■□□□□ 0.05
SHMT2-214ENST00000554604 SRGAP3O43295 1099 aa15.37■□□□□ 0.05
SHMT2-214ENST00000554604 SPDYE6P0CI01 402 aa15.37■□□□□ 0.05
SHMT2-214ENST00000554604 FGFR2P21802 821 aa15.37■□□□□ 0.05
SHMT2-214ENST00000554604 IL15P40933 162 aaPredicted RBP15.37■□□□□ 0.05
SHMT2-214ENST00000554604 LBX1P52954 281 aa15.37■□□□□ 0.05
SHMT2-214ENST00000554604 FTSJ3Q8IY81 847 aaKnown RBP15.37■□□□□ 0.05
SHMT2-214ENST00000554604 PRDM10Q9NQV6 1147 aa15.37■□□□□ 0.05
SHMT2-214ENST00000554604 PA2G4Q9UQ80 394 aaKnown RBP15.37■□□□□ 0.05
SHMT2-214ENST00000554604 CLRN2A0PK11 232 aa15.36■□□□□ 0.05
SHMT2-214ENST00000554604 GNAI2P04899 355 aa15.36■□□□□ 0.05
SHMT2-214ENST00000554604 ATP2B3Q16720 1220 aa15.36■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms