RNA–Protein interactions for RNA: ENST00000554165.1

CCDC88C-208, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 420 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-208ENST00000554165 COPRSQ9NQ92 184 aa14.44□□□□□ -0.1
CCDC88C-208ENST00000554165 GGA3Q9NZ52 723 aa14.44□□□□□ -0.1
CCDC88C-208ENST00000554165 HDAC5Q9UQL6 1122 aa14.44□□□□□ -0.1
CCDC88C-208ENST00000554165 CIAO1O76071 339 aa14.43□□□□□ -0.1
CCDC88C-208ENST00000554165 SASH1O94885 1247 aa14.43□□□□□ -0.1
CCDC88C-208ENST00000554165 PUM3Q15397 648 aaKnown RBP14.43□□□□□ -0.1
CCDC88C-208ENST00000554165 C20orf194Q5TEA3 1177 aa14.43□□□□□ -0.1
CCDC88C-208ENST00000554165 KRT26Q7Z3Y9 468 aa14.43□□□□□ -0.1
CCDC88C-208ENST00000554165 ZNF408Q9H9D4 720 aa14.43□□□□□ -0.1
CCDC88C-208ENST00000554165 ADORA1P30542 326 aa14.42□□□□□ -0.1
CCDC88C-208ENST00000554165 CHAF1AQ13111 956 aaPredicted RBP14.42□□□□□ -0.1
CCDC88C-208ENST00000554165 ANGEL2Q5VTE6 544 aaKnown RBP14.42□□□□□ -0.1
CCDC88C-208ENST00000554165 CDC37L1Q7L3B6 337 aa14.42□□□□□ -0.1
CCDC88C-208ENST00000554165 CEP126Q9P2H0 1117 aa14.42□□□□□ -0.1
CCDC88C-208ENST00000554165 AOX1Q06278 1338 aa14.41□□□□□ -0.1
CCDC88C-208ENST00000554165 FAM205AQ6ZU69 1335 aa14.41□□□□□ -0.1
CCDC88C-208ENST00000554165 CELF2O95319 508 aaKnown RBP14.41□□□□□ -0.1
CCDC88C-208ENST00000554165 IL15P40933 162 aaPredicted RBP14.41□□□□□ -0.1
CCDC88C-208ENST00000554165 TFCP2Q12800 502 aa14.41□□□□□ -0.1
CCDC88C-208ENST00000554165 ATP2B3Q16720 1220 aa14.41□□□□□ -0.1
CCDC88C-208ENST00000554165 VPS37DQ86XT2 251 aa14.41□□□□□ -0.1
CCDC88C-208ENST00000554165 OGFOD1Q8N543 542 aa14.41□□□□□ -0.1
CCDC88C-208ENST00000554165 DCPSQ96C86 337 aaKnown RBP14.41□□□□□ -0.1
CCDC88C-208ENST00000554165 COG6Q9Y2V7 657 aa14.41□□□□□ -0.1
CCDC88C-208ENST00000554165 MYO3BQ8WXR4 1341 aa14.41□□□□□ -0.1
CCDC88C-208ENST00000554165 WNT10BO00744 389 aa14.4□□□□□ -0.1
CCDC88C-208ENST00000554165 IFIT1P09914 478 aaKnown RBP14.4□□□□□ -0.1
CCDC88C-208ENST00000554165 SLC5A1P13866 664 aa14.4□□□□□ -0.1
CCDC88C-208ENST00000554165 TIMM10P62072 90 aa14.4□□□□□ -0.1
CCDC88C-208ENST00000554165 ATP8B2P98198 1209 aa14.4□□□□□ -0.1
CCDC88C-208ENST00000554165 POLA2Q14181 598 aa14.4□□□□□ -0.1
CCDC88C-208ENST00000554165 CAVIN4Q5BKX8 364 aa14.4□□□□□ -0.1
CCDC88C-208ENST00000554165 MFSD14BQ5SR56 506 aa14.4□□□□□ -0.1
CCDC88C-208ENST00000554165 PRAMEF18Q5VWM3 479 aa14.4□□□□□ -0.1
CCDC88C-208ENST00000554165 LPIN2Q92539 896 aa14.4□□□□□ -0.1
CCDC88C-208ENST00000554165 FBXO3Q9UK99 471 aa14.4□□□□□ -0.1
CCDC88C-208ENST00000554165 ABT1Q9ULW3 272 aaKnown RBP14.4□□□□□ -0.1
CCDC88C-208ENST00000554165 PHKA1P46020 1223 aa14.39□□□□□ -0.11
CCDC88C-208ENST00000554165 ZBED3Q96IU2 234 aaPredicted RBP14.39□□□□□ -0.11
CCDC88C-208ENST00000554165 COL1A1P02452 1464 aaPredicted RBP14.38□□□□□ -0.11
CCDC88C-208ENST00000554165 CNTNAP1P78357 1384 aa14.38□□□□□ -0.11
CCDC88C-208ENST00000554165 TRPM7Q96QT4 1865 aa14.38□□□□□ -0.11
CCDC88C-208ENST00000554165 FRAT2O75474 233 aaPredicted RBP14.38□□□□□ -0.11
CCDC88C-208ENST00000554165 VEGFBP49765 207 aa14.38□□□□□ -0.11
CCDC88C-208ENST00000554165 SULF1Q8IWU6 871 aa14.38□□□□□ -0.11
CCDC88C-208ENST00000554165 JMYQ8N9B5 988 aa14.38□□□□□ -0.11
CCDC88C-208ENST00000554165 FKBP1AP62942 108 aaKnown RBP14.37□□□□□ -0.11
CCDC88C-208ENST00000554165 MVPQ14764 893 aaKnown RBP14.37□□□□□ -0.11
CCDC88C-208ENST00000554165 CFAP100Q494V2 611 aa14.37□□□□□ -0.11
CCDC88C-208ENST00000554165 SSH3Q8TE77 659 aa14.37□□□□□ -0.11
CCDC88C-208ENST00000554165 CDCA5Q96FF9 252 aa14.37□□□□□ -0.11
CCDC88C-208ENST00000554165 PRMT6Q96LA8 375 aaPredicted RBP14.37□□□□□ -0.11
CCDC88C-208ENST00000554165 HDAC9Q9UKV0 1011 aa14.37□□□□□ -0.11
CCDC88C-208ENST00000554165 PCNTO95613 3336 aa14.36□□□□□ -0.11
CCDC88C-208ENST00000554165 CLRN2A0PK11 232 aa14.36□□□□□ -0.11
CCDC88C-208ENST00000554165 RASSF10A6NK89 507 aa14.36□□□□□ -0.11
CCDC88C-208ENST00000554165 GRM1Q13255 1194 aa14.36□□□□□ -0.11
CCDC88C-208ENST00000554165 G3BP1Q13283 466 aaKnown RBP eCLIP14.36□□□□□ -0.11
CCDC88C-208ENST00000554165 DLGAP5Q15398 846 aa14.36□□□□□ -0.11
CCDC88C-208ENST00000554165 DEFB115Q30KQ5 88 aa14.36□□□□□ -0.11
CCDC88C-208ENST00000554165 CEP85Q6P2H3 762 aa14.36□□□□□ -0.11
CCDC88C-208ENST00000554165 TTF2Q9UNY4 1162 aaKnown RBP14.36□□□□□ -0.11
CCDC88C-208ENST00000554165 TLL2Q9Y6L7 1015 aa14.36□□□□□ -0.11
CCDC88C-208ENST00000554165 A0A1B0GUL7 405 aa14.35□□□□□ -0.11
CCDC88C-208ENST00000554165 SPDYE2BA6NHP3 402 aa14.35□□□□□ -0.11
CCDC88C-208ENST00000554165 SURF6O75683 361 aaKnown RBP14.35□□□□□ -0.11
CCDC88C-208ENST00000554165 SPDYE6P0CI01 402 aa14.35□□□□□ -0.11
CCDC88C-208ENST00000554165 RBM5P52756 815 aaKnown RBP eCLIP14.35□□□□□ -0.11
CCDC88C-208ENST00000554165 CCDC102BQ68D86 513 aa14.35□□□□□ -0.11
CCDC88C-208ENST00000554165 CYP4F22Q6NT55 531 aa14.35□□□□□ -0.11
CCDC88C-208ENST00000554165 MOB2Q70IA6 237 aa14.35□□□□□ -0.11
CCDC88C-208ENST00000554165 SAPCD2Q86UD0 394 aa14.35□□□□□ -0.11
CCDC88C-208ENST00000554165 XAGE2Q96GT9 111 aa14.35□□□□□ -0.11
CCDC88C-208ENST00000554165 NEUROD6Q96NK8 337 aa14.35□□□□□ -0.11
CCDC88C-208ENST00000554165 PAXIP1Q6ZW49 1069 aaPredicted RBP14.34□□□□□ -0.11
CCDC88C-208ENST00000554165 SIRT2Q8IXJ6 389 aa14.34□□□□□ -0.11
CCDC88C-208ENST00000554165 MTMR14Q8NCE2 650 aa14.34□□□□□ -0.11
CCDC88C-208ENST00000554165 ZBTB40Q9NUA8 1239 aa14.34□□□□□ -0.11
CCDC88C-208ENST00000554165 PITPNM2Q9BZ72 1349 aa14.34□□□□□ -0.11
CCDC88C-208ENST00000554165 MS4A1P11836 297 aa14.33□□□□□ -0.12
CCDC88C-208ENST00000554165 OS9Q13438 667 aaPredicted RBP14.33□□□□□ -0.12
CCDC88C-208ENST00000554165 RASGRF1Q13972 1273 aa14.33□□□□□ -0.12
CCDC88C-208ENST00000554165 CAPNS2Q96L46 248 aa14.33□□□□□ -0.12
CCDC88C-208ENST00000554165 TDRD3Q9H7E2 651 aaKnown RBP14.33□□□□□ -0.12
CCDC88C-208ENST00000554165 GBA2Q9HCG7 927 aaPredicted RBP14.33□□□□□ -0.12
CCDC88C-208ENST00000554165 AOC2O75106 756 aa14.32□□□□□ -0.12
CCDC88C-208ENST00000554165 PRDX5P30044 214 aa14.32□□□□□ -0.12
CCDC88C-208ENST00000554165 CRKP46108 304 aa14.32□□□□□ -0.12
CCDC88C-208ENST00000554165 HUNKP57058 714 aa14.32□□□□□ -0.12
CCDC88C-208ENST00000554165 PI16Q6UXB8 463 aa14.32□□□□□ -0.12
CCDC88C-208ENST00000554165 TBC1D22AQ8WUA7 517 aa14.32□□□□□ -0.12
CCDC88C-208ENST00000554165 VEZTQ9HBM0 779 aa14.32□□□□□ -0.12
CCDC88C-208ENST00000554165 SERPINA10Q9UK55 444 aa14.32□□□□□ -0.12
CCDC88C-208ENST00000554165 DDX19BQ9UMR2 479 aa14.32□□□□□ -0.12
CCDC88C-208ENST00000554165 FZD1Q9UP38 647 aa14.32□□□□□ -0.12
CCDC88C-208ENST00000554165 EXOC6BQ9Y2D4 811 aa14.32□□□□□ -0.12
CCDC88C-208ENST00000554165 AKAP2Q9Y2D5 859 aa14.32□□□□□ -0.12
CCDC88C-208ENST00000554165 NOP58Q9Y2X3 529 aaKnown RBP14.32□□□□□ -0.12
CCDC88C-208ENST00000554165 WDR33Q9C0J8 1336 aaKnown RBP14.32□□□□□ -0.12
CCDC88C-208ENST00000554165 MMP14P50281 582 aa14.31□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms