RNA–Protein interactions for RNA: ENST00000551655.1

VPS29-209, Transcript of VPS29, retromer complex component, humanhuman

TSL 5

Gene VPS29, Length 766 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-209ENST00000551655 CERS5Q8N5B7 392 aa18.79■□□□□ 0.6
VPS29-209ENST00000551655 PHAXQ9H814 394 aaKnown RBP18.79■□□□□ 0.6
VPS29-209ENST00000551655 ZNF804BA4D1E1 1349 aa18.78■□□□□ 0.6
VPS29-209ENST00000551655 F8W031 263 aaPredicted RBP18.78■□□□□ 0.6
VPS29-209ENST00000551655 ANKRD13AQ8IZ07 590 aa18.78■□□□□ 0.6
VPS29-209ENST00000551655 VEZTQ9HBM0 779 aa18.78■□□□□ 0.6
VPS29-209ENST00000551655 CHL1O00533 1208 aa18.77■□□□□ 0.6
VPS29-209ENST00000551655 MNX1P50219 401 aaPredicted RBP18.77■□□□□ 0.6
VPS29-209ENST00000551655 CDAN1Q8IWY9 1227 aa18.77■□□□□ 0.6
VPS29-209ENST00000551655 GREM2Q9H772 168 aa18.77■□□□□ 0.6
VPS29-209ENST00000551655 ZFYVE28Q9HCC9 887 aa18.77■□□□□ 0.6
VPS29-209ENST00000551655 HYPKQ9NX55 129 aa18.77■□□□□ 0.6
VPS29-209ENST00000551655 CCL15-CCL14A0A0B4J2E2 113 aa18.76■□□□□ 0.59
VPS29-209ENST00000551655 TMPOP42166 694 aaKnown RBP18.76■□□□□ 0.59
VPS29-209ENST00000551655 ARHGEF6Q15052 776 aa18.76■□□□□ 0.59
VPS29-209ENST00000551655 NEUROD2Q15784 382 aa18.76■□□□□ 0.59
VPS29-209ENST00000551655 CCL15Q16663 113 aa18.76■□□□□ 0.59
VPS29-209ENST00000551655 SUPT20HL1Q3ZLR7 823 aa18.76■□□□□ 0.59
VPS29-209ENST00000551655 CDC5LQ99459 802 aaKnown RBP18.76■□□□□ 0.59
VPS29-209ENST00000551655 BSDC1Q9NW68 430 aaPredicted RBP18.76■□□□□ 0.59
VPS29-209ENST00000551655 PPP2R3BQ9Y5P8 575 aa18.76■□□□□ 0.59
VPS29-209ENST00000551655 MYH3P11055 1940 aa18.75■□□□□ 0.59
VPS29-209ENST00000551655 HSP90B1P14625 803 aaKnown RBP18.75■□□□□ 0.59
VPS29-209ENST00000551655 CTSWP56202 376 aa18.75■□□□□ 0.59
VPS29-209ENST00000551655 GOLGA2Q08379 1002 aa18.75■□□□□ 0.59
VPS29-209ENST00000551655 CFAP100Q494V2 611 aa18.75■□□□□ 0.59
VPS29-209ENST00000551655 UBE2Q1Q7Z7E8 422 aa18.75■□□□□ 0.59
VPS29-209ENST00000551655 PRMT6Q96LA8 375 aaPredicted RBP18.75■□□□□ 0.59
VPS29-209ENST00000551655 CWC25Q9NXE8 425 aaPredicted RBP18.75■□□□□ 0.59
VPS29-209ENST00000551655 UNCXA6NJT0 531 aa18.74■□□□□ 0.59
VPS29-209ENST00000551655 ZBTB7BO15156 539 aaPredicted RBP18.74■□□□□ 0.59
VPS29-209ENST00000551655 CTGFP29279 349 aa18.74■□□□□ 0.59
VPS29-209ENST00000551655 MMP14P50281 582 aa18.74■□□□□ 0.59
VPS29-209ENST00000551655 LACTBP83111 547 aaPredicted RBP18.74■□□□□ 0.59
VPS29-209ENST00000551655 RASA3Q14644 834 aa18.74■□□□□ 0.59
VPS29-209ENST00000551655 CCDC191Q8NCU4 936 aa18.74■□□□□ 0.59
VPS29-209ENST00000551655 SPDYE2BA6NHP3 402 aa18.73■□□□□ 0.59
VPS29-209ENST00000551655 SPDYE6P0CI01 402 aa18.73■□□□□ 0.59
VPS29-209ENST00000551655 DUSP27Q5VZP5 1158 aa18.73■□□□□ 0.59
VPS29-209ENST00000551655 PPP1R3FQ6ZSY5 799 aaPredicted RBP18.73■□□□□ 0.59
VPS29-209ENST00000551655 TTLL11Q8NHH1 800 aa18.73■□□□□ 0.59
VPS29-209ENST00000551655 PNNQ9H307 717 aaKnown RBP18.73■□□□□ 0.59
VPS29-209ENST00000551655 JAG2Q9Y219 1238 aa18.73■□□□□ 0.59
VPS29-209ENST00000551655 SNAP23O00161 211 aa18.72■□□□□ 0.59
VPS29-209ENST00000551655 MTMR14Q8NCE2 650 aa18.72■□□□□ 0.59
VPS29-209ENST00000551655 CCER1Q8TC90 406 aaPredicted RBP18.72■□□□□ 0.59
VPS29-209ENST00000551655 HOXB7P09629 217 aa18.71■□□□□ 0.59
VPS29-209ENST00000551655 LMOD3Q0VAK6 560 aa18.71■□□□□ 0.59
VPS29-209ENST00000551655 VGLL4Q14135 290 aa18.71■□□□□ 0.59
VPS29-209ENST00000551655 HTATIP2Q9BUP3 242 aa18.71■□□□□ 0.59
VPS29-209ENST00000551655 CD209Q9NNX6 404 aa18.71■□□□□ 0.59
VPS29-209ENST00000551655 STAP2Q9UGK3 403 aa18.71■□□□□ 0.59
VPS29-209ENST00000551655 LEMD3Q9Y2U8 911 aa18.71■□□□□ 0.59
VPS29-209ENST00000551655 MYO1BO43795 1136 aa18.7■□□□□ 0.58
VPS29-209ENST00000551655 TLR2O60603 784 aa18.7■□□□□ 0.58
VPS29-209ENST00000551655 GTF2A2P52657 109 aa18.7■□□□□ 0.58
VPS29-209ENST00000551655 KIF22Q14807 665 aa18.7■□□□□ 0.58
VPS29-209ENST00000551655 Q7L0L9 218 aa18.7■□□□□ 0.58
VPS29-209ENST00000551655 CCDC146Q8IYE0 955 aa18.7■□□□□ 0.58
VPS29-209ENST00000551655 CCL5P13501 91 aa18.69■□□□□ 0.58
VPS29-209ENST00000551655 GJA8P48165 433 aa18.69■□□□□ 0.58
VPS29-209ENST00000551655 COL25A1Q9BXS0 654 aaPredicted RBP18.69■□□□□ 0.58
VPS29-209ENST00000551655 TRIM35Q9UPQ4 493 aa18.69■□□□□ 0.58
VPS29-209ENST00000551655 NR2E3Q9Y5X4 410 aa18.69■□□□□ 0.58
VPS29-209ENST00000551655 BTBD19C9JJ37 291 aa18.68■□□□□ 0.58
VPS29-209ENST00000551655 RBM5P52756 815 aaKnown RBP eCLIP18.68■□□□□ 0.58
VPS29-209ENST00000551655 TEPSINQ96N21 525 aa18.68■□□□□ 0.58
VPS29-209ENST00000551655 METTL22Q9BUU2 404 aaPredicted RBP18.68■□□□□ 0.58
VPS29-209ENST00000551655 ALPK3Q96L96 1907 aa18.68■□□□□ 0.58
VPS29-209ENST00000551655 A0A1B0GUL6 1792 aa18.68■□□□□ 0.58
VPS29-209ENST00000551655 ARAP2Q8WZ64 1704 aa18.67■□□□□ 0.58
VPS29-209ENST00000551655 FARP2O94887 1054 aaPredicted RBP18.67■□□□□ 0.58
VPS29-209ENST00000551655 GJB1P08034 283 aa18.67■□□□□ 0.58
VPS29-209ENST00000551655 TRIM47Q96LD4 638 aa18.67■□□□□ 0.58
VPS29-209ENST00000551655 RNF208Q9H0X6 261 aa18.67■□□□□ 0.58
VPS29-209ENST00000551655 CPA4Q9UI42 421 aa18.67■□□□□ 0.58
VPS29-209ENST00000551655 IRS2Q9Y4H2 1338 aa18.67■□□□□ 0.58
VPS29-209ENST00000551655 A0A1W2PPC1 479 aa18.66■□□□□ 0.58
VPS29-209ENST00000551655 ELL2O00472 640 aaPredicted RBP18.66■□□□□ 0.58
VPS29-209ENST00000551655 IGKV5-2P06315 115 aa18.66■□□□□ 0.58
VPS29-209ENST00000551655 OSBPP22059 807 aa18.66■□□□□ 0.58
VPS29-209ENST00000551655 GRK4P32298 578 aa18.66■□□□□ 0.58
VPS29-209ENST00000551655 IGHMBP2P38935 993 aaKnown RBP18.66■□□□□ 0.58
VPS29-209ENST00000551655 KCNJ4P48050 445 aa18.66■□□□□ 0.58
VPS29-209ENST00000551655 DEFB123Q8N688 67 aa18.66■□□□□ 0.58
VPS29-209ENST00000551655 DDX55Q8NHQ9 600 aaKnown RBP eCLIP18.66■□□□□ 0.58
VPS29-209ENST00000551655 NKX2-3Q8TAU0 364 aa18.66■□□□□ 0.58
VPS29-209ENST00000551655 TMEM39BQ9GZU3 492 aa18.66■□□□□ 0.58
VPS29-209ENST00000551655 TDRD3Q9H7E2 651 aaKnown RBP18.66■□□□□ 0.58
VPS29-209ENST00000551655 ZNF70Q9UC06 446 aaPredicted RBP18.66■□□□□ 0.58
VPS29-209ENST00000551655 SRRDQ9UH36 339 aa18.66■□□□□ 0.58
VPS29-209ENST00000551655 RIPOR2Q9Y4F9 1068 aa18.66■□□□□ 0.58
VPS29-209ENST00000551655 PSMC4P43686 418 aa18.65■□□□□ 0.58
VPS29-209ENST00000551655 MAP3K9P80192 1104 aa18.65■□□□□ 0.58
VPS29-209ENST00000551655 RAET1EQ8TD07 263 aa18.65■□□□□ 0.58
VPS29-209ENST00000551655 MAP3K2Q9Y2U5 619 aa18.65■□□□□ 0.58
VPS29-209ENST00000551655 TCP10L2B9ZVM9 353 aa18.64■□□□□ 0.57
VPS29-209ENST00000551655 EVI5O60447 810 aa18.64■□□□□ 0.57
VPS29-209ENST00000551655 TAF5LO75529 589 aa18.64■□□□□ 0.57
VPS29-209ENST00000551655 PRMT2P55345 433 aa18.64■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms