RNA–Protein interactions for RNA: ENST00000551486.1

LIMA1-207, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 587 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-207ENST00000551486 MISP3Q96FF7 219 aa3.88□□□□□ -1.79
LIMA1-207ENST00000551486 USP26Q9BXU7 913 aa3.88□□□□□ -1.79
LIMA1-207ENST00000551486 ZMYND15Q9H091 742 aa3.88□□□□□ -1.79
LIMA1-207ENST00000551486 VRTNQ9H8Y1 702 aa3.88□□□□□ -1.79
LIMA1-207ENST00000551486 PRKAG2Q9UGJ0 569 aa3.88□□□□□ -1.79
LIMA1-207ENST00000551486 MAFBQ9Y5Q3 323 aaPredicted RBP3.88□□□□□ -1.79
LIMA1-207ENST00000551486 USP17L15C9J2P7 530 aa3.87□□□□□ -1.79
LIMA1-207ENST00000551486 USP17L10C9JJH3 530 aa3.87□□□□□ -1.79
LIMA1-207ENST00000551486 USP17L13C9JLJ4 530 aa3.87□□□□□ -1.79
LIMA1-207ENST00000551486 USP17L12C9JPN9 530 aa3.87□□□□□ -1.79
LIMA1-207ENST00000551486 USP17L11C9JVI0 530 aa3.87□□□□□ -1.79
LIMA1-207ENST00000551486 USP17L21D6R901 530 aa3.87□□□□□ -1.79
LIMA1-207ENST00000551486 USP17L18D6R9N7 530 aa3.87□□□□□ -1.79
LIMA1-207ENST00000551486 USP17L22D6RA61 530 aa3.87□□□□□ -1.79
LIMA1-207ENST00000551486 USP17L17D6RBQ6 530 aa3.87□□□□□ -1.79
LIMA1-207ENST00000551486 USP17L19D6RCP7 530 aa3.87□□□□□ -1.79
LIMA1-207ENST00000551486 USP17L20D6RJB6 530 aa3.87□□□□□ -1.79
LIMA1-207ENST00000551486 UBTFP17480 764 aaKnown RBP3.87□□□□□ -1.79
LIMA1-207ENST00000551486 USP17L24Q0WX57 530 aa3.87□□□□□ -1.79
LIMA1-207ENST00000551486 CRTC2Q53ET0 693 aaPredicted RBP3.87□□□□□ -1.79
LIMA1-207ENST00000551486 EXOSC6Q5RKV6 272 aaKnown RBP3.87□□□□□ -1.79
LIMA1-207ENST00000551486 TMPRSS13Q9BYE2 586 aa3.87□□□□□ -1.79
LIMA1-207ENST00000551486 FAM53CQ9NYF3 392 aa3.87□□□□□ -1.79
LIMA1-207ENST00000551486 ZC3H7BQ9UGR2 993 aaKnown RBP3.87□□□□□ -1.79
LIMA1-207ENST00000551486 CARMIL2Q6F5E8 1435 aa3.87□□□□□ -1.79
LIMA1-207ENST00000551486 FAM170BA6NMN3 283 aa3.86□□□□□ -1.79
LIMA1-207ENST00000551486 B8ZZF3 427 aa3.86□□□□□ -1.79
LIMA1-207ENST00000551486 PDE2AO00408 941 aaPredicted RBP3.86□□□□□ -1.79
LIMA1-207ENST00000551486 PRRG2O14669 202 aa3.86□□□□□ -1.79
LIMA1-207ENST00000551486 TIAF1O95411 115 aa3.86□□□□□ -1.79
LIMA1-207ENST00000551486 ZNF865P0CJ78 1059 aaPredicted RBP3.86□□□□□ -1.79
LIMA1-207ENST00000551486 ADMP35318 185 aa3.86□□□□□ -1.79
LIMA1-207ENST00000551486 RAP1GAPP47736 663 aa3.86□□□□□ -1.79
LIMA1-207ENST00000551486 IKBKEQ14164 716 aa3.86□□□□□ -1.79
LIMA1-207ENST00000551486 CDPF1Q6NVV7 123 aa3.86□□□□□ -1.79
LIMA1-207ENST00000551486 FAM200AQ8TCP9 573 aa3.86□□□□□ -1.79
LIMA1-207ENST00000551486 BCL7CQ8WUZ0 217 aaPredicted RBP3.86□□□□□ -1.79
LIMA1-207ENST00000551486 POM121Q96HA1 1249 aa3.86□□□□□ -1.79
LIMA1-207ENST00000551486 RC3H2Q9HBD1 1191 aaKnown RBP3.86□□□□□ -1.79
LIMA1-207ENST00000551486 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP3.86□□□□□ -1.79
LIMA1-207ENST00000551486 DRD2P14416 443 aa3.85□□□□□ -1.79
LIMA1-207ENST00000551486 SOX4Q06945 474 aaPredicted RBP3.85□□□□□ -1.79
LIMA1-207ENST00000551486 HP1BP3Q5SSJ5 553 aaPredicted RBP3.85□□□□□ -1.79
LIMA1-207ENST00000551486 PDE12Q6L8Q7 609 aaKnown RBP3.85□□□□□ -1.79
LIMA1-207ENST00000551486 C16orf46Q6P387 395 aa3.85□□□□□ -1.79
LIMA1-207ENST00000551486 ETFBKMTQ8IXQ9 262 aa3.85□□□□□ -1.79
LIMA1-207ENST00000551486 SHISA5Q8N114 240 aa3.85□□□□□ -1.79
LIMA1-207ENST00000551486 TTC16Q8NEE8 873 aa3.85□□□□□ -1.79
LIMA1-207ENST00000551486 PI4K2BQ8TCG2 481 aa3.85□□□□□ -1.79
LIMA1-207ENST00000551486 EZH1Q92800 747 aaPredicted RBP3.85□□□□□ -1.79
LIMA1-207ENST00000551486 NCANO14594 1321 aa3.85□□□□□ -1.79
LIMA1-207ENST00000551486 LRRC10BA6NIK2 292 aa3.84□□□□□ -1.79
LIMA1-207ENST00000551486 KRTAP9-7A8MTY7 169 aa3.84□□□□□ -1.79
LIMA1-207ENST00000551486 RPLP1P05386 114 aaKnown RBP3.84□□□□□ -1.79
LIMA1-207ENST00000551486 ZAP70P43403 619 aa3.84□□□□□ -1.79
LIMA1-207ENST00000551486 CYP27C1Q4G0S4 372 aa3.84□□□□□ -1.79
LIMA1-207ENST00000551486 KANK4Q5T7N3 995 aaPredicted RBP3.84□□□□□ -1.79
LIMA1-207ENST00000551486 ADAMTSL4Q6UY14 1074 aa3.84□□□□□ -1.79
LIMA1-207ENST00000551486 SIAH1Q8IUQ4 282 aa3.84□□□□□ -1.79
LIMA1-207ENST00000551486 PMEPA1Q969W9 287 aa3.84□□□□□ -1.79
LIMA1-207ENST00000551486 PPP1R16BQ96T49 567 aa3.84□□□□□ -1.79
LIMA1-207ENST00000551486 ZFYVE1Q9HBF4 777 aa3.84□□□□□ -1.79
LIMA1-207ENST00000551486 LOC100289279A0A1B0GTE1 492 aa3.83□□□□□ -1.8
LIMA1-207ENST00000551486 CYP2E1P05181 493 aaPredicted RBP3.83□□□□□ -1.8
LIMA1-207ENST00000551486 PCSK2P16519 638 aa3.83□□□□□ -1.8
LIMA1-207ENST00000551486 RAB6AP20340 208 aa3.83□□□□□ -1.8
LIMA1-207ENST00000551486 FUT4P22083 530 aa3.83□□□□□ -1.8
LIMA1-207ENST00000551486 CES1P23141 567 aa3.83□□□□□ -1.8
LIMA1-207ENST00000551486 FLIIQ13045 1269 aa3.83□□□□□ -1.8
LIMA1-207ENST00000551486 ZNF574Q6ZN55 896 aaPredicted RBP3.83□□□□□ -1.8
LIMA1-207ENST00000551486 ZNF765Q7L2R6 523 aa3.83□□□□□ -1.8
LIMA1-207ENST00000551486 ZNF438Q7Z4V0 828 aa3.83□□□□□ -1.8
LIMA1-207ENST00000551486 ANKLE2Q86XL3 938 aa3.83□□□□□ -1.8
LIMA1-207ENST00000551486 C2CD4AQ8NCU7 369 aaPredicted RBP3.83□□□□□ -1.8
LIMA1-207ENST00000551486 GLIS3Q8NEA6 775 aa3.83□□□□□ -1.8
LIMA1-207ENST00000551486 GPR152Q8TDT2 470 aa3.83□□□□□ -1.8
LIMA1-207ENST00000551486 BSNDQ8WZ55 320 aa3.83□□□□□ -1.8
LIMA1-207ENST00000551486 SOX17Q9H6I2 414 aaPredicted RBP3.83□□□□□ -1.8
LIMA1-207ENST00000551486 ELP3Q9H9T3 547 aa3.83□□□□□ -1.8
LIMA1-207ENST00000551486 DZANK1Q9NVP4 752 aa3.83□□□□□ -1.8
LIMA1-207ENST00000551486 KANSL3Q9P2N6 904 aa3.83□□□□□ -1.8
LIMA1-207ENST00000551486 SOX13Q9UN79 622 aa3.83□□□□□ -1.8
LIMA1-207ENST00000551486 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP3.82□□□□□ -1.8
LIMA1-207ENST00000551486 SOX1O00570 391 aaPredicted RBP3.82□□□□□ -1.8
LIMA1-207ENST00000551486 NFICP08651 508 aa3.82□□□□□ -1.8
LIMA1-207ENST00000551486 FKBP5Q13451 457 aaPredicted RBP3.82□□□□□ -1.8
LIMA1-207ENST00000551486 OGFOD3Q6PK18 319 aa3.82□□□□□ -1.8
LIMA1-207ENST00000551486 SPRED2Q7Z698 418 aa3.82□□□□□ -1.8
LIMA1-207ENST00000551486 ABTB2Q8N961 1025 aa3.82□□□□□ -1.8
LIMA1-207ENST00000551486 TMEM102Q8N9M5 508 aaPredicted RBP3.82□□□□□ -1.8
LIMA1-207ENST00000551486 GLMNQ92990 594 aa3.82□□□□□ -1.8
LIMA1-207ENST00000551486 PPP1R12CQ9BZL4 782 aa3.82□□□□□ -1.8
LIMA1-207ENST00000551486 SALL4Q9UJQ4 1053 aa3.82□□□□□ -1.8
LIMA1-207ENST00000551486 RNASE1P07998 156 aaKnown RBP3.81□□□□□ -1.8
LIMA1-207ENST00000551486 ZSCAN22P10073 491 aaPredicted RBP3.81□□□□□ -1.8
LIMA1-207ENST00000551486 CFPP27918 469 aa3.81□□□□□ -1.8
LIMA1-207ENST00000551486 LMOD1P29536 600 aaPredicted RBP3.81□□□□□ -1.8
LIMA1-207ENST00000551486 GSTM4Q03013 218 aa3.81□□□□□ -1.8
LIMA1-207ENST00000551486 MESP2Q0VG99 397 aa3.81□□□□□ -1.8
LIMA1-207ENST00000551486 BNIP3Q12983 259 aa3.81□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms