RNA–Protein interactions for RNA: ENST00000550611.1

LIMA1-206, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 543 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-206ENST00000550611 TREML1Q86YW5 311 aa6.17□□□□□ -1.42
LIMA1-206ENST00000550611 VTI1AQ96AJ9 217 aa6.17□□□□□ -1.42
LIMA1-206ENST00000550611 ANGEL1Q9UNK9 670 aaKnown RBP6.17□□□□□ -1.42
LIMA1-206ENST00000550611 MAFBQ9Y5Q3 323 aaPredicted RBP6.17□□□□□ -1.42
LIMA1-206ENST00000550611 IQGAP2Q13576 1575 aa6.17□□□□□ -1.42
LIMA1-206ENST00000550611 MED1Q15648 1581 aaPredicted RBP6.17□□□□□ -1.42
LIMA1-206ENST00000550611 LTBP4Q8N2S1 1624 aa6.17□□□□□ -1.42
LIMA1-206ENST00000550611 WDR64B1ANS9 1081 aa6.16□□□□□ -1.42
LIMA1-206ENST00000550611 FSCN2O14926 492 aa6.16□□□□□ -1.42
LIMA1-206ENST00000550611 LGR5O75473 907 aa6.16□□□□□ -1.42
LIMA1-206ENST00000550611 SMNDC1O75940 238 aaKnown RBP eCLIP6.16□□□□□ -1.42
LIMA1-206ENST00000550611 PRNPP04156 253 aa6.16□□□□□ -1.42
LIMA1-206ENST00000550611 BMP3P12645 472 aa6.16□□□□□ -1.42
LIMA1-206ENST00000550611 ITGB5P18084 799 aa6.16□□□□□ -1.42
LIMA1-206ENST00000550611 HOXA10P31260 410 aaPredicted RBP6.16□□□□□ -1.42
LIMA1-206ENST00000550611 CPSF6Q16630 551 aaKnown RBP eCLIP6.16□□□□□ -1.42
LIMA1-206ENST00000550611 MSMPQ1L6U9 139 aa6.16□□□□□ -1.42
LIMA1-206ENST00000550611 CRTC2Q53ET0 693 aaPredicted RBP6.16□□□□□ -1.42
LIMA1-206ENST00000550611 FAM117BQ6P1L5 589 aa6.16□□□□□ -1.42
LIMA1-206ENST00000550611 TXNDC11Q6PKC3 985 aa6.16□□□□□ -1.42
LIMA1-206ENST00000550611 ANKMY2Q8IV38 441 aa6.16□□□□□ -1.42
LIMA1-206ENST00000550611 OR13H1Q8NG92 308 aa6.16□□□□□ -1.42
LIMA1-206ENST00000550611 FOXD4L4Q8WXT5 416 aaPredicted RBP6.16□□□□□ -1.42
LIMA1-206ENST00000550611 TFIP11Q9UBB9 837 aaKnown RBP6.16□□□□□ -1.42
LIMA1-206ENST00000550611 LRFN2Q9ULH4 789 aa6.16□□□□□ -1.42
LIMA1-206ENST00000550611 ZCCHC11Q5TAX3 1644 aaKnown RBP6.16□□□□□ -1.42
LIMA1-206ENST00000550611 WDR7Q9Y4E6 1490 aa6.15□□□□□ -1.42
LIMA1-206ENST00000550611 SART1O43290 800 aaKnown RBP6.15□□□□□ -1.42
LIMA1-206ENST00000550611 JUNBP17275 347 aaPredicted RBP6.15□□□□□ -1.42
LIMA1-206ENST00000550611 HYAL2Q12891 473 aa6.15□□□□□ -1.42
LIMA1-206ENST00000550611 GIMAP7Q8NHV1 300 aa6.15□□□□□ -1.42
LIMA1-206ENST00000550611 FBXL18Q96ME1 805 aa6.15□□□□□ -1.42
LIMA1-206ENST00000550611 CARD10Q9BWT7 1032 aa6.15□□□□□ -1.42
LIMA1-206ENST00000550611 LACRTQ9GZZ8 138 aa6.15□□□□□ -1.42
LIMA1-206ENST00000550611 KCNF1Q9H3M0 494 aa6.15□□□□□ -1.42
LIMA1-206ENST00000550611 ZNF335Q9H4Z2 1342 aaPredicted RBP6.15□□□□□ -1.43
LIMA1-206ENST00000550611 RAPGEF2Q9Y4G8 1499 aa6.15□□□□□ -1.43
LIMA1-206ENST00000550611 ARAP3Q8WWN8 1544 aa6.15□□□□□ -1.43
LIMA1-206ENST00000550611 FAM196BA6NMK8 535 aa6.14□□□□□ -1.43
LIMA1-206ENST00000550611 ADAM11O75078 769 aa6.14□□□□□ -1.43
LIMA1-206ENST00000550611 FOSL1P15407 271 aa6.14□□□□□ -1.43
LIMA1-206ENST00000550611 PREPP48147 710 aa6.14□□□□□ -1.43
LIMA1-206ENST00000550611 ATP11AP98196 1134 aa6.14□□□□□ -1.43
LIMA1-206ENST00000550611 CEP135Q66GS9 1140 aa6.14□□□□□ -1.43
LIMA1-206ENST00000550611 WNT8BQ93098 351 aa6.14□□□□□ -1.43
LIMA1-206ENST00000550611 SPACA7Q96KW9 195 aa6.14□□□□□ -1.43
LIMA1-206ENST00000550611 RNF208Q9H0X6 261 aa6.14□□□□□ -1.43
LIMA1-206ENST00000550611 SEC31BQ9NQW1 1179 aa6.14□□□□□ -1.43
LIMA1-206ENST00000550611 LEMD3Q9Y2U8 911 aa6.14□□□□□ -1.43
LIMA1-206ENST00000550611 DDX3YO15523 660 aaKnown RBP6.13□□□□□ -1.43
LIMA1-206ENST00000550611 TRIP4Q15650 581 aaPredicted RBP6.13□□□□□ -1.43
LIMA1-206ENST00000550611 KANK4Q5T7N3 995 aaPredicted RBP6.13□□□□□ -1.43
LIMA1-206ENST00000550611 COL13A1Q5TAT6 717 aaPredicted RBP6.13□□□□□ -1.43
LIMA1-206ENST00000550611 NFXL1Q6ZNB6 911 aa6.13□□□□□ -1.43
LIMA1-206ENST00000550611 UBASH3BQ8TF42 649 aa6.13□□□□□ -1.43
LIMA1-206ENST00000550611 MFSD14AQ96MC6 490 aa6.13□□□□□ -1.43
LIMA1-206ENST00000550611 ATG3Q9NT62 314 aa6.13□□□□□ -1.43
LIMA1-206ENST00000550611 CCDC39Q9UFE4 941 aa6.13□□□□□ -1.43
LIMA1-206ENST00000550611 USP17L15C9J2P7 530 aa6.12□□□□□ -1.43
LIMA1-206ENST00000550611 USP17L10C9JJH3 530 aa6.12□□□□□ -1.43
LIMA1-206ENST00000550611 USP17L13C9JLJ4 530 aa6.12□□□□□ -1.43
LIMA1-206ENST00000550611 USP17L12C9JPN9 530 aa6.12□□□□□ -1.43
LIMA1-206ENST00000550611 USP17L11C9JVI0 530 aa6.12□□□□□ -1.43
LIMA1-206ENST00000550611 USP17L21D6R901 530 aa6.12□□□□□ -1.43
LIMA1-206ENST00000550611 USP17L18D6R9N7 530 aa6.12□□□□□ -1.43
LIMA1-206ENST00000550611 USP17L22D6RA61 530 aa6.12□□□□□ -1.43
LIMA1-206ENST00000550611 USP17L17D6RBQ6 530 aa6.12□□□□□ -1.43
LIMA1-206ENST00000550611 USP17L19D6RCP7 530 aa6.12□□□□□ -1.43
LIMA1-206ENST00000550611 USP17L20D6RJB6 530 aa6.12□□□□□ -1.43
LIMA1-206ENST00000550611 EPHA1P21709 976 aa6.12□□□□□ -1.43
LIMA1-206ENST00000550611 USP17L24Q0WX57 530 aa6.12□□□□□ -1.43
LIMA1-206ENST00000550611 LCE4AQ5TA78 99 aa6.12□□□□□ -1.43
LIMA1-206ENST00000550611 VSIG10LQ86VR7 867 aa6.12□□□□□ -1.43
LIMA1-206ENST00000550611 KLHDC7BQ96G42 594 aa6.12□□□□□ -1.43
LIMA1-206ENST00000550611 ADAM19Q9H013 955 aa6.12□□□□□ -1.43
LIMA1-206ENST00000550611 SIGLEC1Q9BZZ2 1709 aa6.11□□□□□ -1.43
LIMA1-206ENST00000550611 KIAA0556O60303 1618 aa6.11□□□□□ -1.43
LIMA1-206ENST00000550611 PTPRTO14522 1441 aa6.11□□□□□ -1.43
LIMA1-206ENST00000550611 PHLDB1Q86UU1 1377 aa6.11□□□□□ -1.43
LIMA1-206ENST00000550611 KIF4AO95239 1232 aa6.11□□□□□ -1.43
LIMA1-206ENST00000550611 PTPRAP18433 802 aa6.11□□□□□ -1.43
LIMA1-206ENST00000550611 COX20Q5RI15 118 aa6.11□□□□□ -1.43
LIMA1-206ENST00000550611 ADAMTSL4Q6UY14 1074 aa6.11□□□□□ -1.43
LIMA1-206ENST00000550611 ARXQ96QS3 562 aa6.11□□□□□ -1.43
LIMA1-206ENST00000550611 PBX4Q9BYU1 374 aa6.11□□□□□ -1.43
LIMA1-206ENST00000550611 RASSF4Q9H2L5 321 aa6.11□□□□□ -1.43
LIMA1-206ENST00000550611 OSGEPQ9NPF4 335 aa6.11□□□□□ -1.43
LIMA1-206ENST00000550611 ABCA8O94911 1581 aa6.1□□□□□ -1.43
LIMA1-206ENST00000550611 MEGF11A6BM72 1044 aa6.1□□□□□ -1.43
LIMA1-206ENST00000550611 F13BP05160 661 aa6.1□□□□□ -1.43
LIMA1-206ENST00000550611 MAP4P27816 1152 aaKnown RBP6.1□□□□□ -1.43
LIMA1-206ENST00000550611 CDC25BP30305 580 aa6.1□□□□□ -1.43
LIMA1-206ENST00000550611 FDX2Q6P4F2 183 aa6.1□□□□□ -1.43
LIMA1-206ENST00000550611 ETFBKMTQ8IXQ9 262 aa6.1□□□□□ -1.43
LIMA1-206ENST00000550611 COL26A1Q96A83 441 aa6.1□□□□□ -1.43
LIMA1-206ENST00000550611 SH2B1Q9NRF2 756 aaPredicted RBP6.1□□□□□ -1.43
LIMA1-206ENST00000550611 CFAP43Q8NDM7 1665 aa6.1□□□□□ -1.43
LIMA1-206ENST00000550611 ATP10BO94823 1461 aa6.09□□□□□ -1.43
LIMA1-206ENST00000550611 FAM177BA6PVY3 158 aa6.09□□□□□ -1.43
LIMA1-206ENST00000550611 H3BRJ5 948 aa6.09□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms