RNA–Protein interactions for RNA: ENST00000549578.5

VPS29-206, Transcript of VPS29, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS29, Length 1,523 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-206ENST00000549578 USP17L3A6NCW0 530 aa25.92■■□□□ 1.74
VPS29-206ENST00000549578 USP17L4A6NCW7 530 aa25.92■■□□□ 1.74
VPS29-206ENST00000549578 MX1P20591 662 aa25.92■■□□□ 1.74
VPS29-206ENST00000549578 PDE4AP27815 886 aa25.92■■□□□ 1.74
VPS29-206ENST00000549578 TTLL5Q6EMB2 1281 aa25.92■■□□□ 1.74
VPS29-206ENST00000549578 USP17L1Q7RTZ2 530 aa25.92■■□□□ 1.74
VPS29-206ENST00000549578 ECHDC1Q9NTX5 307 aa25.92■■□□□ 1.74
VPS29-206ENST00000549578 PSME4Q14997 1843 aa25.92■■□□□ 1.74
VPS29-206ENST00000549578 PSMD14O00487 310 aa25.91■■□□□ 1.74
VPS29-206ENST00000549578 SEMA3EO15041 775 aa25.91■■□□□ 1.74
VPS29-206ENST00000549578 CIAPIN1Q6FI81 312 aa25.91■■□□□ 1.74
VPS29-206ENST00000549578 GPATCH3Q96I76 525 aa25.91■■□□□ 1.74
VPS29-206ENST00000549578 ZNF512BQ96KM6 892 aaPredicted RBP25.91■■□□□ 1.74
VPS29-206ENST00000549578 SNRKQ9NRH2 765 aa25.91■■□□□ 1.74
VPS29-206ENST00000549578 HMG20BQ9P0W2 317 aa25.91■■□□□ 1.74
VPS29-206ENST00000549578 DENND2AQ9ULE3 1009 aa25.91■■□□□ 1.74
VPS29-206ENST00000549578 ZC3H4Q9UPT8 1303 aaKnown RBP25.91■■□□□ 1.74
VPS29-206ENST00000549578 ZNF646O15015 1829 aaPredicted RBP25.9■■□□□ 1.74
VPS29-206ENST00000549578 MXD3Q9BW11 206 aa25.9■■□□□ 1.74
VPS29-206ENST00000549578 FAM205AQ6ZU69 1335 aa25.9■■□□□ 1.74
VPS29-206ENST00000549578 AKAP11Q9UKA4 1901 aa25.89■■□□□ 1.74
VPS29-206ENST00000549578 STRIP1Q5VSL9 837 aa25.89■■□□□ 1.74
VPS29-206ENST00000549578 SKAP1Q86WV1 359 aa25.89■■□□□ 1.74
VPS29-206ENST00000549578 SPATA5Q8NB90 893 aa25.89■■□□□ 1.74
VPS29-206ENST00000549578 GJA3Q9Y6H8 435 aa25.89■■□□□ 1.74
VPS29-206ENST00000549578 NDUFB9Q9Y6M9 179 aa25.89■■□□□ 1.74
VPS29-206ENST00000549578 ATP5JP18859 108 aa25.88■■□□□ 1.73
VPS29-206ENST00000549578 DACT2Q5SW24 774 aa25.88■■□□□ 1.73
VPS29-206ENST00000549578 BOLA2Q9H3K6 86 aa25.88■■□□□ 1.73
VPS29-206ENST00000549578 TTC41PQ6P2S7 1318 aa25.88■■□□□ 1.73
VPS29-206ENST00000549578 ZBTB22O15209 634 aa25.88■■□□□ 1.73
VPS29-206ENST00000549578 PDE1AP54750 535 aa25.88■■□□□ 1.73
VPS29-206ENST00000549578 TNIP1Q15025 636 aa25.88■■□□□ 1.73
VPS29-206ENST00000549578 PLEKHM2Q8IWE5 1019 aa25.88■■□□□ 1.73
VPS29-206ENST00000549578 VIL1P09327 827 aaKnown RBP25.87■■□□□ 1.73
VPS29-206ENST00000549578 STAP2Q9UGK3 403 aa25.87■■□□□ 1.73
VPS29-206ENST00000549578 ZBTB12Q9Y330 459 aaPredicted RBP25.87■■□□□ 1.73
VPS29-206ENST00000549578 DDNO94850 711 aaPredicted RBP25.86■■□□□ 1.73
VPS29-206ENST00000549578 ZAP70P43403 619 aa25.86■■□□□ 1.73
VPS29-206ENST00000549578 MFSD14BQ5SR56 506 aa25.86■■□□□ 1.73
VPS29-206ENST00000549578 CERS5Q8N5B7 392 aa25.86■■□□□ 1.73
VPS29-206ENST00000549578 PI4K2BQ8TCG2 481 aa25.86■■□□□ 1.73
VPS29-206ENST00000549578 PPIL4Q8WUA2 492 aaKnown RBP eCLIP25.86■■□□□ 1.73
VPS29-206ENST00000549578 PDS5AQ29RF7 1337 aaKnown RBP25.86■■□□□ 1.73
VPS29-206ENST00000549578 RSBN1LQ6PCB5 846 aaPredicted RBP25.85■■□□□ 1.73
VPS29-206ENST00000549578 GPC2Q8N158 579 aa25.85■■□□□ 1.73
VPS29-206ENST00000549578 WDR66Q8TBY9 1149 aa25.85■■□□□ 1.73
VPS29-206ENST00000549578 DNAJC2Q99543 621 aaKnown RBP25.84■■□□□ 1.73
VPS29-206ENST00000549578 ERC2O15083 957 aa25.83■■□□□ 1.73
VPS29-206ENST00000549578 DPY19L2Q6NUT2 758 aa25.83■■□□□ 1.73
VPS29-206ENST00000549578 TBC1D9Q6ZT07 1266 aa25.83■■□□□ 1.73
VPS29-206ENST00000549578 TBC1D22AQ8WUA7 517 aa25.83■■□□□ 1.73
VPS29-206ENST00000549578 HAUS7Q99871 368 aa25.83■■□□□ 1.73
VPS29-206ENST00000549578 GLTPD2A6NH11 291 aa25.83■■□□□ 1.72
VPS29-206ENST00000549578 GLRX3O76003 335 aaKnown RBP25.83■■□□□ 1.72
VPS29-206ENST00000549578 CYP2E1P05181 493 aaPredicted RBP25.83■■□□□ 1.72
VPS29-206ENST00000549578 GRIK5Q16478 980 aa25.83■■□□□ 1.72
VPS29-206ENST00000549578 EDC3Q96F86 508 aaKnown RBP25.83■■□□□ 1.72
VPS29-206ENST00000549578 GMPSP49915 693 aaPredicted RBP25.82■■□□□ 1.72
VPS29-206ENST00000549578 OSBPL3Q9H4L5 887 aa25.82■■□□□ 1.72
VPS29-206ENST00000549578 ANTXR1Q9H6X2 564 aa25.82■■□□□ 1.72
VPS29-206ENST00000549578 ABCF2Q9UG63 623 aa25.82■■□□□ 1.72
VPS29-206ENST00000549578 GOLIM4O00461 696 aa25.81■■□□□ 1.72
VPS29-206ENST00000549578 FKBP1AP62942 108 aaKnown RBP25.81■■□□□ 1.72
VPS29-206ENST00000549578 GMLQ99445 158 aa25.81■■□□□ 1.72
VPS29-206ENST00000549578 AOX1Q06278 1338 aa25.81■■□□□ 1.72
VPS29-206ENST00000549578 SALL1Q9NSC2 1324 aa25.81■■□□□ 1.72
VPS29-206ENST00000549578 F8W031 263 aaPredicted RBP25.8■■□□□ 1.72
VPS29-206ENST00000549578 MAP4K4O95819 1239 aaPredicted RBP25.8■■□□□ 1.72
VPS29-206ENST00000549578 PRDX5P30044 214 aa25.8■■□□□ 1.72
VPS29-206ENST00000549578 KIAA0825Q8IV33 1275 aa25.8■■□□□ 1.72
VPS29-206ENST00000549578 AGBL3Q8NEM8 1001 aa25.8■■□□□ 1.72
VPS29-206ENST00000549578 PIH1D3Q9NQM4 214 aaKnown RBP25.8■■□□□ 1.72
VPS29-206ENST00000549578 MYO3BQ8WXR4 1341 aa25.8■■□□□ 1.72
VPS29-206ENST00000549578 PAG1Q9NWQ8 432 aa25.79■■□□□ 1.72
VPS29-206ENST00000549578 RPS12P25398 132 aaKnown RBP25.78■■□□□ 1.72
VPS29-206ENST00000549578 RGS3P49796 1198 aa25.78■■□□□ 1.72
VPS29-206ENST00000549578 SCNN1DP51172 638 aa25.78■■□□□ 1.72
VPS29-206ENST00000549578 MYO5AQ9Y4I1 1855 aaKnown RBP25.78■■□□□ 1.72
VPS29-206ENST00000549578 SHTN1A0MZ66 631 aa25.78■■□□□ 1.72
VPS29-206ENST00000549578 ZGPATQ8N5A5 531 aaKnown RBP25.78■■□□□ 1.72
VPS29-206ENST00000549578 LDHBP07195 334 aaKnown RBP25.77■■□□□ 1.72
VPS29-206ENST00000549578 ZNF526Q8TF50 670 aaPredicted RBP25.77■■□□□ 1.72
VPS29-206ENST00000549578 LRP2BPQ9P2M1 347 aa25.77■■□□□ 1.72
VPS29-206ENST00000549578 DPF2Q92785 391 aa25.76■■□□□ 1.71
VPS29-206ENST00000549578 L3MBTL3Q96JM7 780 aaPredicted RBP25.76■■□□□ 1.71
VPS29-206ENST00000549578 TTF2Q9UNY4 1162 aaKnown RBP25.76■■□□□ 1.71
VPS29-206ENST00000549578 USP17L8P0C7I0 530 aa25.75■■□□□ 1.71
VPS29-206ENST00000549578 TTF1Q15361 905 aaPredicted RBP25.75■■□□□ 1.71
VPS29-206ENST00000549578 SPTY2D1Q68D10 685 aaPredicted RBP25.75■■□□□ 1.71
VPS29-206ENST00000549578 ERICH6Q7L0X2 663 aa25.75■■□□□ 1.71
VPS29-206ENST00000549578 MICALL2Q8IY33 904 aa25.75■■□□□ 1.71
VPS29-206ENST00000549578 GPRC5DQ9NZD1 345 aa25.75■■□□□ 1.71
VPS29-206ENST00000549578 RAI14Q9P0K7 980 aa25.75■■□□□ 1.71
VPS29-206ENST00000549578 CNOT7Q9UIV1 285 aaKnown RBP25.75■■□□□ 1.71
VPS29-206ENST00000549578 SUGT1Q9Y2Z0 365 aa25.75■■□□□ 1.71
VPS29-206ENST00000549578 IDH1O75874 414 aaKnown RBP25.74■■□□□ 1.71
VPS29-206ENST00000549578 DOCK2Q92608 1830 aa25.74■■□□□ 1.71
VPS29-206ENST00000549578 EPS15P42566 896 aa25.73■■□□□ 1.71
VPS29-206ENST00000549578 TTC22Q5TAA0 569 aa25.73■■□□□ 1.71
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms