RNA–Protein interactions for RNA: ENST00000547247.5

SMARCD1-203, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1, humanhuman

TSL 1 (best)

Gene SMARCD1, Length 1,584 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD1-203ENST00000547247 VIL1P09327 827 aaKnown RBP28.38■■■□□ 2.13
SMARCD1-203ENST00000547247 PPP4R2Q9NY27 417 aa28.38■■■□□ 2.13
SMARCD1-203ENST00000547247 ARID4AP29374 1257 aaPredicted RBP28.37■■■□□ 2.13
SMARCD1-203ENST00000547247 NUCB1Q02818 461 aa28.37■■■□□ 2.13
SMARCD1-203ENST00000547247 ZNF512BQ96KM6 892 aaPredicted RBP28.37■■■□□ 2.13
SMARCD1-203ENST00000547247 DENND2AQ9ULE3 1009 aa28.37■■■□□ 2.13
SMARCD1-203ENST00000547247 FAM205AQ6ZU69 1335 aa28.37■■■□□ 2.13
SMARCD1-203ENST00000547247 KDM2BQ8NHM5 1336 aa28.37■■■□□ 2.13
SMARCD1-203ENST00000547247 CHD1LQ86WJ1 897 aa28.37■■■□□ 2.13
SMARCD1-203ENST00000547247 LNPKQ9C0E8 428 aa28.37■■■□□ 2.13
SMARCD1-203ENST00000547247 PSME4Q14997 1843 aa28.36■■■□□ 2.13
SMARCD1-203ENST00000547247 CHAF1AQ13111 956 aaPredicted RBP28.36■■■□□ 2.13
SMARCD1-203ENST00000547247 RASGRF1Q13972 1273 aa28.36■■■□□ 2.13
SMARCD1-203ENST00000547247 DACT2Q5SW24 774 aa28.36■■■□□ 2.13
SMARCD1-203ENST00000547247 JAG2Q9Y219 1238 aa28.36■■■□□ 2.13
SMARCD1-203ENST00000547247 RSBN1LQ6PCB5 846 aaPredicted RBP28.35■■■□□ 2.13
SMARCD1-203ENST00000547247 CENPQQ7L2Z9 268 aaPredicted RBP28.35■■■□□ 2.13
SMARCD1-203ENST00000547247 C16orf71Q8IYS4 520 aaPredicted RBP28.35■■■□□ 2.13
SMARCD1-203ENST00000547247 WDR66Q8TBY9 1149 aa28.33■■■□□ 2.13
SMARCD1-203ENST00000547247 GPATCH3Q96I76 525 aa28.33■■■□□ 2.13
SMARCD1-203ENST00000547247 ZBTB12Q9Y330 459 aaPredicted RBP28.33■■■□□ 2.13
SMARCD1-203ENST00000547247 MYH13Q9UKX3 1938 aa28.33■■■□□ 2.13
SMARCD1-203ENST00000547247 MYO3BQ8WXR4 1341 aa28.33■■■□□ 2.13
SMARCD1-203ENST00000547247 RPS12P25398 132 aaKnown RBP28.33■■■□□ 2.12
SMARCD1-203ENST00000547247 MCAMP43121 646 aa28.33■■■□□ 2.12
SMARCD1-203ENST00000547247 FKBP1AP62942 108 aaKnown RBP28.33■■■□□ 2.12
SMARCD1-203ENST00000547247 AGBL3Q8NEM8 1001 aa28.33■■■□□ 2.12
SMARCD1-203ENST00000547247 TBC1D22AQ8WUA7 517 aa28.33■■■□□ 2.12
SMARCD1-203ENST00000547247 NMRK2Q9NPI5 230 aa28.33■■■□□ 2.12
SMARCD1-203ENST00000547247 HMG20BQ9P0W2 317 aa28.33■■■□□ 2.12
SMARCD1-203ENST00000547247 PDS5AQ29RF7 1337 aaKnown RBP28.32■■■□□ 2.12
SMARCD1-203ENST00000547247 COL1A1P02452 1464 aaPredicted RBP28.32■■■□□ 2.12
SMARCD1-203ENST00000547247 SCARF1Q14162 830 aa28.32■■■□□ 2.12
SMARCD1-203ENST00000547247 MFSD14BQ5SR56 506 aa28.32■■■□□ 2.12
SMARCD1-203ENST00000547247 SPATA5Q8NB90 893 aa28.32■■■□□ 2.12
SMARCD1-203ENST00000547247 MXD3Q9BW11 206 aa28.32■■■□□ 2.12
SMARCD1-203ENST00000547247 GMPSP49915 693 aaPredicted RBP28.31■■■□□ 2.12
SMARCD1-203ENST00000547247 DPF2Q92785 391 aa28.31■■■□□ 2.12
SMARCD1-203ENST00000547247 ECHDC1Q9NTX5 307 aa28.31■■■□□ 2.12
SMARCD1-203ENST00000547247 OTUD7AQ8TE49 926 aaPredicted RBP28.3■■■□□ 2.12
SMARCD1-203ENST00000547247 L3MBTL3Q96JM7 780 aaPredicted RBP28.3■■■□□ 2.12
SMARCD1-203ENST00000547247 ZNF646O15015 1829 aaPredicted RBP28.3■■■□□ 2.12
SMARCD1-203ENST00000547247 WDR90Q96KV7 1748 aa28.3■■■□□ 2.12
SMARCD1-203ENST00000547247 ATP5JP18859 108 aa28.29■■■□□ 2.12
SMARCD1-203ENST00000547247 PI16Q6UXB8 463 aa28.29■■■□□ 2.12
SMARCD1-203ENST00000547247 CERS5Q8N5B7 392 aa28.29■■■□□ 2.12
SMARCD1-203ENST00000547247 PPIL4Q8WUA2 492 aaKnown RBP eCLIP28.29■■■□□ 2.12
SMARCD1-203ENST00000547247 GMLQ99445 158 aa28.29■■■□□ 2.12
SMARCD1-203ENST00000547247 MX1P20591 662 aa28.28■■■□□ 2.12
SMARCD1-203ENST00000547247 SNRKQ9NRH2 765 aa28.28■■■□□ 2.12
SMARCD1-203ENST00000547247 TTC41PQ6P2S7 1318 aa28.28■■■□□ 2.12
SMARCD1-203ENST00000547247 SALL3Q9BXA9 1300 aa28.28■■■□□ 2.12
SMARCD1-203ENST00000547247 SALL1Q9NSC2 1324 aa28.28■■■□□ 2.12
SMARCD1-203ENST00000547247 SCNN1DP51172 638 aa28.28■■■□□ 2.12
SMARCD1-203ENST00000547247 ZGPATQ8N5A5 531 aaKnown RBP28.28■■■□□ 2.12
SMARCD1-203ENST00000547247 RRAGCQ9HB90 399 aa28.28■■■□□ 2.12
SMARCD1-203ENST00000547247 LMOD1P29536 600 aaPredicted RBP28.27■■■□□ 2.12
SMARCD1-203ENST00000547247 AKAP11Q9UKA4 1901 aa28.26■■■□□ 2.11
SMARCD1-203ENST00000547247 ZAP70P43403 619 aa28.26■■■□□ 2.11
SMARCD1-203ENST00000547247 KIAA0825Q8IV33 1275 aa28.26■■■□□ 2.11
SMARCD1-203ENST00000547247 GPRC5DQ9NZD1 345 aa28.26■■■□□ 2.11
SMARCD1-203ENST00000547247 CNOT7Q9UIV1 285 aaKnown RBP28.26■■■□□ 2.11
SMARCD1-203ENST00000547247 KIF3CO14782 793 aa28.25■■■□□ 2.11
SMARCD1-203ENST00000547247 ERC2O15083 957 aa28.25■■■□□ 2.11
SMARCD1-203ENST00000547247 BOLA2Q9H3K6 86 aa28.25■■■□□ 2.11
SMARCD1-203ENST00000547247 SUGT1Q9Y2Z0 365 aa28.25■■■□□ 2.11
SMARCD1-203ENST00000547247 IQCA1LA6NCM1 817 aa28.24■■■□□ 2.11
SMARCD1-203ENST00000547247 USP17L8P0C7I0 530 aa28.24■■■□□ 2.11
SMARCD1-203ENST00000547247 PDE1AP54750 535 aa28.24■■■□□ 2.11
SMARCD1-203ENST00000547247 TSHZ3Q63HK5 1081 aa28.24■■■□□ 2.11
SMARCD1-203ENST00000547247 ABCF2Q9UG63 623 aa28.24■■■□□ 2.11
SMARCD1-203ENST00000547247 STAP2Q9UGK3 403 aa28.24■■■□□ 2.11
SMARCD1-203ENST00000547247 HACL1Q9UJ83 578 aa28.24■■■□□ 2.11
SMARCD1-203ENST00000547247 MICALL2Q8IY33 904 aa28.24■■■□□ 2.11
SMARCD1-203ENST00000547247 OGFOD1Q8N543 542 aa28.24■■■□□ 2.11
SMARCD1-203ENST00000547247 F8W031 263 aaPredicted RBP28.23■■■□□ 2.11
SMARCD1-203ENST00000547247 H7C1D1 291 aa28.23■■■□□ 2.11
SMARCD1-203ENST00000547247 CYP2E1P05181 493 aaPredicted RBP28.23■■■□□ 2.11
SMARCD1-203ENST00000547247 MMP14P50281 582 aa28.23■■■□□ 2.11
SMARCD1-203ENST00000547247 SPTY2D1Q68D10 685 aaPredicted RBP28.23■■■□□ 2.11
SMARCD1-203ENST00000547247 DNAJC2Q99543 621 aaKnown RBP28.23■■■□□ 2.11
SMARCD1-203ENST00000547247 HDAC9Q9UKV0 1011 aa28.23■■■□□ 2.11
SMARCD1-203ENST00000547247 SCN4AP35499 1836 aa28.23■■■□□ 2.11
SMARCD1-203ENST00000547247 POTECB2RU33 542 aa28.22■■■□□ 2.11
SMARCD1-203ENST00000547247 GLRX3O76003 335 aaKnown RBP28.22■■■□□ 2.11
SMARCD1-203ENST00000547247 VEGFAP15692 232 aaPredicted RBP28.22■■■□□ 2.11
SMARCD1-203ENST00000547247 EPS15P42566 896 aa28.22■■■□□ 2.11
SMARCD1-203ENST00000547247 GRIK5Q16478 980 aa28.22■■■□□ 2.11
SMARCD1-203ENST00000547247 TBC1D9Q6ZT07 1266 aa28.22■■■□□ 2.11
SMARCD1-203ENST00000547247 PI4K2BQ8TCG2 481 aa28.22■■■□□ 2.11
SMARCD1-203ENST00000547247 HAUS7Q99871 368 aa28.22■■■□□ 2.11
SMARCD1-203ENST00000547247 TTF2Q9UNY4 1162 aaKnown RBP28.22■■■□□ 2.11
SMARCD1-203ENST00000547247 NDUFB9Q9Y6M9 179 aa28.22■■■□□ 2.11
SMARCD1-203ENST00000547247 LDHBP07195 334 aaKnown RBP28.21■■■□□ 2.11
SMARCD1-203ENST00000547247 PRDX5P30044 214 aa28.21■■■□□ 2.11
SMARCD1-203ENST00000547247 PLEKHM2Q8IWE5 1019 aa28.21■■■□□ 2.11
SMARCD1-203ENST00000547247 SHTN1A0MZ66 631 aa28.2■■■□□ 2.11
SMARCD1-203ENST00000547247 PDE4AP27815 886 aa28.2■■■□□ 2.11
SMARCD1-203ENST00000547247 ZNF280AP59817 542 aaPredicted RBP28.2■■■□□ 2.11
SMARCD1-203ENST00000547247 TTF1Q15361 905 aaPredicted RBP28.2■■■□□ 2.1
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms