RNA–Protein interactions for RNA: ENST00000546820.5

PTCH1-213, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 864 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-213ENST00000546820 L3MBTL3Q96JM7 780 aaPredicted RBP16.88■□□□□ 0.29
PTCH1-213ENST00000546820 RRAGCQ9HB90 399 aa16.88■□□□□ 0.29
PTCH1-213ENST00000546820 IQSEC3Q9UPP2 1182 aaPredicted RBP16.88■□□□□ 0.29
PTCH1-213ENST00000546820 FAM205AQ6ZU69 1335 aa16.88■□□□□ 0.29
PTCH1-213ENST00000546820 ZNF609O15014 1411 aa16.87■□□□□ 0.29
PTCH1-213ENST00000546820 MMP14P50281 582 aa16.87■□□□□ 0.29
PTCH1-213ENST00000546820 DACT2Q5SW24 774 aa16.87■□□□□ 0.29
PTCH1-213ENST00000546820 ERICH6BQ5W0A0 696 aa16.87■□□□□ 0.29
PTCH1-213ENST00000546820 WDR66Q8TBY9 1149 aa16.87■□□□□ 0.29
PTCH1-213ENST00000546820 DBNDD2Q9BQY9 259 aa16.87■□□□□ 0.29
PTCH1-213ENST00000546820 H7C1D1 291 aa16.86■□□□□ 0.29
PTCH1-213ENST00000546820 GMPSP49915 693 aaPredicted RBP16.86■□□□□ 0.29
PTCH1-213ENST00000546820 CHAF1AQ13111 956 aaPredicted RBP16.86■□□□□ 0.29
PTCH1-213ENST00000546820 SMC5Q8IY18 1101 aa16.86■□□□□ 0.29
PTCH1-213ENST00000546820 OGFOD1Q8N543 542 aa16.86■□□□□ 0.29
PTCH1-213ENST00000546820 ZNF784Q8NCA9 323 aaPredicted RBP16.86■□□□□ 0.29
PTCH1-213ENST00000546820 CNOT7Q9UIV1 285 aaKnown RBP16.86■□□□□ 0.29
PTCH1-213ENST00000546820 HACL1Q9UJ83 578 aa16.86■□□□□ 0.29
PTCH1-213ENST00000546820 DBNLQ9UJU6 430 aaKnown RBP16.86■□□□□ 0.29
PTCH1-213ENST00000546820 ZBTB12Q9Y330 459 aaPredicted RBP16.86■□□□□ 0.29
PTCH1-213ENST00000546820 SMARCA5O60264 1052 aaPredicted RBP16.85■□□□□ 0.29
PTCH1-213ENST00000546820 MFSD14BQ5SR56 506 aa16.85■□□□□ 0.29
PTCH1-213ENST00000546820 GPATCH3Q96I76 525 aa16.85■□□□□ 0.29
PTCH1-213ENST00000546820 ZNF512BQ96KM6 892 aaPredicted RBP16.85■□□□□ 0.29
PTCH1-213ENST00000546820 GPRC5DQ9NZD1 345 aa16.85■□□□□ 0.29
PTCH1-213ENST00000546820 HDAC9Q9UKV0 1011 aa16.85■□□□□ 0.29
PTCH1-213ENST00000546820 USP17L8P0C7I0 530 aa16.84■□□□□ 0.29
PTCH1-213ENST00000546820 ARID4AP29374 1257 aaPredicted RBP16.84■□□□□ 0.29
PTCH1-213ENST00000546820 C16orf71Q8IYS4 520 aaPredicted RBP16.84■□□□□ 0.29
PTCH1-213ENST00000546820 ZGPATQ8N5A5 531 aaKnown RBP16.84■□□□□ 0.29
PTCH1-213ENST00000546820 SUGT1Q9Y2Z0 365 aa16.84■□□□□ 0.29
PTCH1-213ENST00000546820 SCNN1DP51172 638 aa16.83■□□□□ 0.28
PTCH1-213ENST00000546820 RASGRF1Q13972 1273 aa16.83■□□□□ 0.28
PTCH1-213ENST00000546820 PDS5AQ29RF7 1337 aaKnown RBP16.83■□□□□ 0.28
PTCH1-213ENST00000546820 SPTY2D1Q68D10 685 aaPredicted RBP16.83■□□□□ 0.28
PTCH1-213ENST00000546820 PNMA8AQ86V59 439 aaPredicted RBP16.83■□□□□ 0.28
PTCH1-213ENST00000546820 SPATA5Q8NB90 893 aa16.83■□□□□ 0.28
PTCH1-213ENST00000546820 GMLQ99445 158 aa16.83■□□□□ 0.28
PTCH1-213ENST00000546820 NMRK2Q9NPI5 230 aa16.83■□□□□ 0.28
PTCH1-213ENST00000546820 ADARB2Q9NS39 739 aaKnown RBP16.83■□□□□ 0.28
PTCH1-213ENST00000546820 JAG2Q9Y219 1238 aa16.83■□□□□ 0.28
PTCH1-213ENST00000546820 SCN9AQ15858 1988 aa16.82■□□□□ 0.28
PTCH1-213ENST00000546820 EPHX2P34913 555 aa16.82■□□□□ 0.28
PTCH1-213ENST00000546820 EPS15P42566 896 aa16.82■□□□□ 0.28
PTCH1-213ENST00000546820 B4GALNT3Q6L9W6 998 aa16.82■□□□□ 0.28
PTCH1-213ENST00000546820 MICALL2Q8IY33 904 aa16.82■□□□□ 0.28
PTCH1-213ENST00000546820 MXD3Q9BW11 206 aa16.82■□□□□ 0.28
PTCH1-213ENST00000546820 TLR7Q9NYK1 1049 aaKnown RBP16.82■□□□□ 0.28
PTCH1-213ENST00000546820 HMG20BQ9P0W2 317 aa16.82■□□□□ 0.28
PTCH1-213ENST00000546820 ARAP2Q8WZ64 1704 aa16.82■□□□□ 0.28
PTCH1-213ENST00000546820 POTECB2RU33 542 aa16.81■□□□□ 0.28
PTCH1-213ENST00000546820 USP50Q70EL3 339 aaPredicted RBP16.81■□□□□ 0.28
PTCH1-213ENST00000546820 KIAA0825Q8IV33 1275 aa16.81■□□□□ 0.28
PTCH1-213ENST00000546820 TAF1DQ9H5J8 278 aaPredicted RBP16.81■□□□□ 0.28
PTCH1-213ENST00000546820 WDR90Q96KV7 1748 aa16.81■□□□□ 0.28
PTCH1-213ENST00000546820 SCN4AP35499 1836 aa16.8■□□□□ 0.28
PTCH1-213ENST00000546820 PSME4Q14997 1843 aa16.8■□□□□ 0.28
PTCH1-213ENST00000546820 SALL1Q9NSC2 1324 aa16.8■□□□□ 0.28
PTCH1-213ENST00000546820 LDHBP07195 334 aaKnown RBP16.8■□□□□ 0.28
PTCH1-213ENST00000546820 ATP5JP18859 108 aa16.8■□□□□ 0.28
PTCH1-213ENST00000546820 MCAMP43121 646 aa16.8■□□□□ 0.28
PTCH1-213ENST00000546820 ZNF280AP59817 542 aaPredicted RBP16.8■□□□□ 0.28
PTCH1-213ENST00000546820 NUCB1Q02818 461 aa16.8■□□□□ 0.28
PTCH1-213ENST00000546820 CERS5Q8N5B7 392 aa16.8■□□□□ 0.28
PTCH1-213ENST00000546820 PPIL4Q8WUA2 492 aaKnown RBP eCLIP16.8■□□□□ 0.28
PTCH1-213ENST00000546820 CCDC136Q96JN2 1154 aa16.8■□□□□ 0.28
PTCH1-213ENST00000546820 ECHDC1Q9NTX5 307 aa16.8■□□□□ 0.28
PTCH1-213ENST00000546820 ABCF2Q9UG63 623 aa16.8■□□□□ 0.28
PTCH1-213ENST00000546820 TTF2Q9UNY4 1162 aaKnown RBP16.8■□□□□ 0.28
PTCH1-213ENST00000546820 MAST3O60307 1309 aa16.79■□□□□ 0.28
PTCH1-213ENST00000546820 F8W031 263 aaPredicted RBP16.79■□□□□ 0.28
PTCH1-213ENST00000546820 RBM26Q5T8P6 1007 aaKnown RBP16.79■□□□□ 0.28
PTCH1-213ENST00000546820 CHD1LQ86WJ1 897 aa16.79■□□□□ 0.28
PTCH1-213ENST00000546820 MRIQ9BWK5 157 aa16.79■□□□□ 0.28
PTCH1-213ENST00000546820 SNRKQ9NRH2 765 aa16.79■□□□□ 0.28
PTCH1-213ENST00000546820 ERC2O15083 957 aa16.78■□□□□ 0.28
PTCH1-213ENST00000546820 IGSF3O75054 1194 aa16.78■□□□□ 0.28
PTCH1-213ENST00000546820 HDLBPQ00341 1268 aaKnown RBP16.78■□□□□ 0.28
PTCH1-213ENST00000546820 SCARF1Q14162 830 aa16.78■□□□□ 0.28
PTCH1-213ENST00000546820 TTF1Q15361 905 aaPredicted RBP16.78■□□□□ 0.28
PTCH1-213ENST00000546820 EAPPQ56P03 285 aaPredicted RBP16.78■□□□□ 0.28
PTCH1-213ENST00000546820 ERICH6Q7L0X2 663 aa16.78■□□□□ 0.28
PTCH1-213ENST00000546820 SLF2Q8IX21 1173 aa16.78■□□□□ 0.28
PTCH1-213ENST00000546820 LNPKQ9C0E8 428 aa16.78■□□□□ 0.28
PTCH1-213ENST00000546820 MYOZ2Q9NPC6 264 aa16.78■□□□□ 0.28
PTCH1-213ENST00000546820 LRP2BPQ9P2M1 347 aa16.78■□□□□ 0.28
PTCH1-213ENST00000546820 CLEC11AQ9Y240 323 aa16.78■□□□□ 0.28
PTCH1-213ENST00000546820 TTC41PQ6P2S7 1318 aa16.77■□□□□ 0.28
PTCH1-213ENST00000546820 ZAP70P43403 619 aa16.77■□□□□ 0.28
PTCH1-213ENST00000546820 RBM5P52756 815 aaKnown RBP eCLIP16.77■□□□□ 0.28
PTCH1-213ENST00000546820 DLGAP5Q15398 846 aa16.77■□□□□ 0.28
PTCH1-213ENST00000546820 TBC1D10BQ4KMP7 808 aaPredicted RBP16.77■□□□□ 0.28
PTCH1-213ENST00000546820 CENPQQ7L2Z9 268 aaPredicted RBP16.77■□□□□ 0.28
PTCH1-213ENST00000546820 BOLA2Q9H3K6 86 aa16.77■□□□□ 0.28
PTCH1-213ENST00000546820 PPP4R2Q9NY27 417 aa16.77■□□□□ 0.28
PTCH1-213ENST00000546820 SERPINA10Q9UK55 444 aa16.77■□□□□ 0.28
PTCH1-213ENST00000546820 MYH13Q9UKX3 1938 aa16.76■□□□□ 0.27
PTCH1-213ENST00000546820 KIF3CO14782 793 aa16.76■□□□□ 0.27
PTCH1-213ENST00000546820 MX1P20591 662 aa16.76■□□□□ 0.27
PTCH1-213ENST00000546820 KIF4BQ2VIQ3 1234 aa16.76■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms