RNA–Protein interactions for RNA: ENST00000544910.5

VPS50-220, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2 BASIC

Gene VPS50, Length 5,736 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-220ENST00000544910 JAK2O60674 1132 aa6.67□□□□□ -1.34
VPS50-220ENST00000544910 A1BGP04217 495 aa6.67□□□□□ -1.34
VPS50-220ENST00000544910 PDE4CQ08493 712 aa6.67□□□□□ -1.34
VPS50-220ENST00000544910 IQCA1Q86XH1 822 aa6.67□□□□□ -1.34
VPS50-220ENST00000544910 EDC3Q96F86 508 aaKnown RBP6.67□□□□□ -1.34
VPS50-220ENST00000544910 USP42Q9H9J4 1324 aaKnown RBP6.67□□□□□ -1.34
VPS50-220ENST00000544910 RTL9Q8NET4 1388 aa6.67□□□□□ -1.34
VPS50-220ENST00000544910 ZNF500O60304 480 aaPredicted RBP6.67□□□□□ -1.34
VPS50-220ENST00000544910 RANBP6O60518 1105 aaKnown RBP6.67□□□□□ -1.34
VPS50-220ENST00000544910 PFKFB2O60825 505 aa6.67□□□□□ -1.34
VPS50-220ENST00000544910 ATP6V1AP38606 617 aa6.67□□□□□ -1.34
VPS50-220ENST00000544910 TERF1P54274 439 aa6.67□□□□□ -1.34
VPS50-220ENST00000544910 RTN1Q16799 776 aa6.67□□□□□ -1.34
VPS50-220ENST00000544910 KANK3Q6NY19 840 aa6.67□□□□□ -1.34
VPS50-220ENST00000544910 MAGEB6Q8N7X4 407 aa6.67□□□□□ -1.34
VPS50-220ENST00000544910 TMEM87AQ8NBN3 555 aa6.67□□□□□ -1.34
VPS50-220ENST00000544910 APPBP2Q92624 585 aa6.67□□□□□ -1.34
VPS50-220ENST00000544910 CDK5RAP3Q96JB5 506 aa6.67□□□□□ -1.34
VPS50-220ENST00000544910 ERLIN1O75477 346 aa6.67□□□□□ -1.34
VPS50-220ENST00000544910 CCDC102BQ68D86 513 aa6.67□□□□□ -1.34
VPS50-220ENST00000544910 CBX8Q9HC52 389 aa6.67□□□□□ -1.34
VPS50-220ENST00000544910 GPR108Q9NPR9 543 aa6.67□□□□□ -1.34
VPS50-220ENST00000544910 CIAO1O76071 339 aa6.66□□□□□ -1.34
VPS50-220ENST00000544910 CASQ1P31415 396 aa6.66□□□□□ -1.34
VPS50-220ENST00000544910 TMTC2Q8N394 836 aa6.66□□□□□ -1.34
VPS50-220ENST00000544910 CTCFLQ8NI51 663 aaPredicted RBP6.66□□□□□ -1.34
VPS50-220ENST00000544910 PIBF1Q8WXW3 757 aa6.66□□□□□ -1.34
VPS50-220ENST00000544910 SH3TC1Q8TE82 1336 aa6.66□□□□□ -1.34
VPS50-220ENST00000544910 ZPR1O75312 459 aa6.66□□□□□ -1.34
VPS50-220ENST00000544910 TAF5LO75529 589 aa6.66□□□□□ -1.34
VPS50-220ENST00000544910 KIAA0754O94854 1291 aa6.66□□□□□ -1.34
VPS50-220ENST00000544910 ZNF589Q86UQ0 364 aaPredicted RBP6.66□□□□□ -1.34
VPS50-220ENST00000544910 FAM89AQ96GI7 184 aa6.66□□□□□ -1.34
VPS50-220ENST00000544910 DBNLQ9UJU6 430 aaKnown RBP6.66□□□□□ -1.34
VPS50-220ENST00000544910 SLIT1O75093 1534 aa6.66□□□□□ -1.34
VPS50-220ENST00000544910 TMEM94Q12767 1356 aa6.66□□□□□ -1.34
VPS50-220ENST00000544910 USP5P45974 858 aa6.66□□□□□ -1.34
VPS50-220ENST00000544910 SOGA3Q5TF21 947 aa6.66□□□□□ -1.34
VPS50-220ENST00000544910 TTLL5Q6EMB2 1281 aa6.66□□□□□ -1.34
VPS50-220ENST00000544910 FAM173BQ6P4H8 233 aa6.66□□□□□ -1.34
VPS50-220ENST00000544910 TRMT1Q9NXH9 659 aaKnown RBP6.66□□□□□ -1.34
VPS50-220ENST00000544910 RIMS1Q86UR5 1692 aaKnown RBP6.66□□□□□ -1.34
VPS50-220ENST00000544910 SASH1O94885 1247 aa6.66□□□□□ -1.34
VPS50-220ENST00000544910 LARGE1O95461 756 aa6.66□□□□□ -1.34
VPS50-220ENST00000544910 ZNF75DP51815 510 aa6.66□□□□□ -1.34
VPS50-220ENST00000544910 SNW1Q13573 536 aaKnown RBP6.66□□□□□ -1.34
VPS50-220ENST00000544910 PUM3Q15397 648 aaKnown RBP6.66□□□□□ -1.34
VPS50-220ENST00000544910 KLHL34Q8N239 644 aa6.66□□□□□ -1.34
VPS50-220ENST00000544910 NCOA5Q9HCD5 579 aaKnown RBP6.66□□□□□ -1.34
VPS50-220ENST00000544910 FMN2Q9NZ56 1722 aa6.66□□□□□ -1.34
VPS50-220ENST00000544910 MAGEB6P1A0A0J9YX57 407 aa6.65□□□□□ -1.34
VPS50-220ENST00000544910 PDE8AO60658 829 aa6.65□□□□□ -1.34
VPS50-220ENST00000544910 CYP2E1P05181 493 aaPredicted RBP6.65□□□□□ -1.34
VPS50-220ENST00000544910 CYP7A1P22680 504 aa6.65□□□□□ -1.34
VPS50-220ENST00000544910 MARCKSP29966 332 aaPredicted RBP6.65□□□□□ -1.34
VPS50-220ENST00000544910 ISM2Q6H9L7 571 aa6.65□□□□□ -1.34
VPS50-220ENST00000544910 DZIP1Q86YF9 867 aaKnown RBP6.65□□□□□ -1.34
VPS50-220ENST00000544910 CCDC82Q8N4S0 544 aa6.65□□□□□ -1.34
VPS50-220ENST00000544910 SEC62Q99442 399 aaKnown RBP6.65□□□□□ -1.34
VPS50-220ENST00000544910 GPAA1O43292 621 aa6.65□□□□□ -1.34
VPS50-220ENST00000544910 DTNBO60941 627 aa6.65□□□□□ -1.34
VPS50-220ENST00000544910 CLSTN1O94985 981 aa6.65□□□□□ -1.34
VPS50-220ENST00000544910 NECTIN1Q15223 517 aa6.65□□□□□ -1.34
VPS50-220ENST00000544910 TTLL7Q6ZT98 887 aa6.65□□□□□ -1.34
VPS50-220ENST00000544910 FAM177A1Q8N128 213 aaPredicted RBP6.65□□□□□ -1.34
VPS50-220ENST00000544910 ZNF274Q96GC6 653 aaPredicted RBP6.65□□□□□ -1.34
VPS50-220ENST00000544910 NSFL1CQ9UNZ2 370 aaKnown RBP6.65□□□□□ -1.34
VPS50-220ENST00000544910 ELP1O95163 1332 aa6.65□□□□□ -1.34
VPS50-220ENST00000544910 RFX7Q2KHR2 1363 aa6.65□□□□□ -1.34
VPS50-220ENST00000544910 PATL2C9JE40 543 aaKnown RBP6.65□□□□□ -1.34
VPS50-220ENST00000544910 ADAMTS2O95450 1211 aa6.65□□□□□ -1.34
VPS50-220ENST00000544910 SKILP12757 684 aa6.65□□□□□ -1.34
VPS50-220ENST00000544910 NLRP5P59047 1200 aa6.65□□□□□ -1.34
VPS50-220ENST00000544910 TCIRG1Q13488 830 aa6.65□□□□□ -1.34
VPS50-220ENST00000544910 CAGE1Q8TC20 777 aa6.65□□□□□ -1.34
VPS50-220ENST00000544910 TMEM87BQ96K49 555 aa6.65□□□□□ -1.34
VPS50-220ENST00000544910 TTC14Q96N46 770 aa6.65□□□□□ -1.34
VPS50-220ENST00000544910 PYM1Q9BRP8 204 aaKnown RBP6.65□□□□□ -1.34
VPS50-220ENST00000544910 ZAP70P43403 619 aa6.65□□□□□ -1.35
VPS50-220ENST00000544910 PPP4R3BQ5MIZ7 849 aa6.65□□□□□ -1.35
VPS50-220ENST00000544910 ANKRD18AQ8IVF6 992 aa6.65□□□□□ -1.35
VPS50-220ENST00000544910 ESR2Q92731 530 aa6.65□□□□□ -1.35
VPS50-220ENST00000544910 ZNF287Q9HBT7 754 aa6.65□□□□□ -1.35
VPS50-220ENST00000544910 ZDHHC9Q9Y397 364 aa6.65□□□□□ -1.35
VPS50-220ENST00000544910 MROH5Q6ZUA9 1318 aa6.65□□□□□ -1.35
VPS50-220ENST00000544910 CEMIPQ8WUJ3 1361 aa6.65□□□□□ -1.35
VPS50-220ENST00000544910 RPAP1Q9BWH6 1393 aaPredicted RBP6.65□□□□□ -1.35
VPS50-220ENST00000544910 HEG1Q9ULI3 1381 aa6.65□□□□□ -1.35
VPS50-220ENST00000544910 OVOS2A0A0G2JMS6 1433 aa6.65□□□□□ -1.35
VPS50-220ENST00000544910 M0R2C6 588 aa6.65□□□□□ -1.35
VPS50-220ENST00000544910 SCRN1Q12765 414 aa6.65□□□□□ -1.35
VPS50-220ENST00000544910 IFIT1BQ5T764 474 aaKnown RBP6.65□□□□□ -1.35
VPS50-220ENST00000544910 FAM107BQ9H098 131 aa6.65□□□□□ -1.35
VPS50-220ENST00000544910 BTG4Q9NY30 223 aa6.65□□□□□ -1.35
VPS50-220ENST00000544910 SIPA1L2Q9P2F8 1722 aaPredicted RBP6.64□□□□□ -1.35
VPS50-220ENST00000544910 HSPD1P10809 573 aaKnown RBP6.64□□□□□ -1.35
VPS50-220ENST00000544910 LRRC24Q50LG9 513 aa6.64□□□□□ -1.35
VPS50-220ENST00000544910 CRNKL1Q9BZJ0 848 aaKnown RBP6.64□□□□□ -1.35
VPS50-220ENST00000544910 ZNHIT6Q9NWK9 470 aaKnown RBP6.64□□□□□ -1.35
VPS50-220ENST00000544910 NIP7Q9Y221 180 aaKnown RBP eCLIP6.64□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms