RNA–Protein interactions for RNA: ENST00000544504.5

YBX3-215, Transcript of Y-box binding protein 3, humanhuman

TSL 3

Gene YBX3, Length 583 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-215ENST00000544504 SLC5A1P13866 664 aa11.62□□□□□ -0.55
YBX3-215ENST00000544504 PDE4AP27815 886 aa11.62□□□□□ -0.55
YBX3-215ENST00000544504 PDE1AP54750 535 aa11.62□□□□□ -0.55
YBX3-215ENST00000544504 PUM3Q15397 648 aaKnown RBP11.62□□□□□ -0.55
YBX3-215ENST00000544504 ATP2B3Q16720 1220 aa11.62□□□□□ -0.55
YBX3-215ENST00000544504 PLEKHM2Q8IWE5 1019 aa11.62□□□□□ -0.55
YBX3-215ENST00000544504 NIM1KQ8IY84 436 aa11.62□□□□□ -0.55
YBX3-215ENST00000544504 ZC3H15Q8WU90 426 aaKnown RBP11.62□□□□□ -0.55
YBX3-215ENST00000544504 CELF1Q92879 486 aaKnown RBP11.62□□□□□ -0.55
YBX3-215ENST00000544504 GLIS2Q9BZE0 524 aaPredicted RBP11.62□□□□□ -0.55
YBX3-215ENST00000544504 PGAP2Q9UHJ9 254 aa11.62□□□□□ -0.55
YBX3-215ENST00000544504 TRPM7Q96QT4 1865 aa11.61□□□□□ -0.55
YBX3-215ENST00000544504 ZNF609O15014 1411 aa11.61□□□□□ -0.55
YBX3-215ENST00000544504 EIF5BO60841 1220 aaKnown RBP11.61□□□□□ -0.55
YBX3-215ENST00000544504 GLRX3O76003 335 aaKnown RBP11.61□□□□□ -0.55
YBX3-215ENST00000544504 CHRNDQ07001 517 aa11.61□□□□□ -0.55
YBX3-215ENST00000544504 UBE4AQ14139 1066 aa11.61□□□□□ -0.55
YBX3-215ENST00000544504 BMP2KLQ5H9B9 411 aa11.61□□□□□ -0.55
YBX3-215ENST00000544504 GORABQ5T7V8 394 aa11.61□□□□□ -0.55
YBX3-215ENST00000544504 LPIN2Q92539 896 aa11.61□□□□□ -0.55
YBX3-215ENST00000544504 EAF2Q96CJ1 260 aaPredicted RBP11.61□□□□□ -0.55
YBX3-215ENST00000544504 NEUROD6Q96NK8 337 aa11.61□□□□□ -0.55
YBX3-215ENST00000544504 ZNF408Q9H9D4 720 aa11.61□□□□□ -0.55
YBX3-215ENST00000544504 ECHDC1Q9NTX5 307 aa11.61□□□□□ -0.55
YBX3-215ENST00000544504 CASP8AP2Q9UKL3 1982 aa11.61□□□□□ -0.55
YBX3-215ENST00000544504 SALL3Q9BXA9 1300 aa11.6□□□□□ -0.55
YBX3-215ENST00000544504 A0A1B0GUL7 405 aa11.6□□□□□ -0.55
YBX3-215ENST00000544504 KCNJ4P48050 445 aa11.6□□□□□ -0.55
YBX3-215ENST00000544504 CCDC158Q5M9N0 1113 aa11.6□□□□□ -0.55
YBX3-215ENST00000544504 CDC37L1Q7L3B6 337 aa11.6□□□□□ -0.55
YBX3-215ENST00000544504 SP8Q8IXZ3 490 aa11.6□□□□□ -0.55
YBX3-215ENST00000544504 VGLL2Q8N8G2 317 aa11.6□□□□□ -0.55
YBX3-215ENST00000544504 BCL11AQ9H165 835 aa11.6□□□□□ -0.55
YBX3-215ENST00000544504 VPS33BQ9H267 617 aa11.6□□□□□ -0.55
YBX3-215ENST00000544504 MINPP1Q9UNW1 487 aa11.6□□□□□ -0.55
YBX3-215ENST00000544504 LEMD3Q9Y2U8 911 aa11.6□□□□□ -0.55
YBX3-215ENST00000544504 MKI67P46013 3256 aaKnown RBP11.6□□□□□ -0.55
YBX3-215ENST00000544504 XDHP47989 1333 aa11.6□□□□□ -0.55
YBX3-215ENST00000544504 SPEF2Q9C093 1822 aa11.59□□□□□ -0.55
YBX3-215ENST00000544504 PPEF1O14829 653 aaPredicted RBP11.59□□□□□ -0.55
YBX3-215ENST00000544504 HUNKP57058 714 aa11.59□□□□□ -0.55
YBX3-215ENST00000544504 TTC22Q5TAA0 569 aa11.59□□□□□ -0.55
YBX3-215ENST00000544504 ZIC5Q96T25 663 aa11.59□□□□□ -0.55
YBX3-215ENST00000544504 CCDC8Q9H0W5 538 aaPredicted RBP11.59□□□□□ -0.55
YBX3-215ENST00000544504 ATP6V0A2Q9Y487 856 aa11.59□□□□□ -0.55
YBX3-215ENST00000544504 PPIP5K2O43314 1243 aa11.58□□□□□ -0.56
YBX3-215ENST00000544504 UQCRFS1P1P0C7P4 283 aa11.58□□□□□ -0.56
YBX3-215ENST00000544504 ATP5JP18859 108 aa11.58□□□□□ -0.56
YBX3-215ENST00000544504 FGFR2P21802 821 aa11.58□□□□□ -0.56
YBX3-215ENST00000544504 ATP2B4P23634 1241 aa11.58□□□□□ -0.56
YBX3-215ENST00000544504 GMPSP49915 693 aaPredicted RBP11.58□□□□□ -0.56
YBX3-215ENST00000544504 CAVIN4Q5BKX8 364 aa11.58□□□□□ -0.56
YBX3-215ENST00000544504 TICAM2Q86XR7 235 aa11.58□□□□□ -0.56
YBX3-215ENST00000544504 PPIL4Q8WUA2 492 aaKnown RBP eCLIP11.58□□□□□ -0.56
YBX3-215ENST00000544504 CCDC102AQ96A19 550 aa11.58□□□□□ -0.56
YBX3-215ENST00000544504 ZNF512BQ96KM6 892 aaPredicted RBP11.58□□□□□ -0.56
YBX3-215ENST00000544504 ANKIB1Q9P2G1 1089 aa11.58□□□□□ -0.56
YBX3-215ENST00000544504 DBNLQ9UJU6 430 aaKnown RBP11.58□□□□□ -0.56
YBX3-215ENST00000544504 ZNRF3Q9ULT6 936 aa11.58□□□□□ -0.56
YBX3-215ENST00000544504 FAM155AB1AL88 458 aaPredicted RBP11.57□□□□□ -0.56
YBX3-215ENST00000544504 TIMM10P62072 90 aa11.57□□□□□ -0.56
YBX3-215ENST00000544504 CXCL9Q07325 125 aa11.57□□□□□ -0.56
YBX3-215ENST00000544504 TTC39AQ5SRH9 613 aa11.57□□□□□ -0.56
YBX3-215ENST00000544504 RGMBQ6NW40 437 aa11.57□□□□□ -0.56
YBX3-215ENST00000544504 CTU1Q7Z7A3 348 aaKnown RBP11.57□□□□□ -0.56
YBX3-215ENST00000544504 HELBQ8NG08 1087 aaPredicted RBP11.57□□□□□ -0.56
YBX3-215ENST00000544504 OTUD7AQ8TE49 926 aaPredicted RBP11.57□□□□□ -0.56
YBX3-215ENST00000544504 XAGE2Q96GT9 111 aa11.57□□□□□ -0.56
YBX3-215ENST00000544504 DBNDD2Q9BQY9 259 aa11.57□□□□□ -0.56
YBX3-215ENST00000544504 GNL3LQ9NVN8 582 aaKnown RBP11.57□□□□□ -0.56
YBX3-215ENST00000544504 PODXL2Q9NZ53 605 aa11.57□□□□□ -0.56
YBX3-215ENST00000544504 LRRC37AA6NMS7 1700 aa11.56□□□□□ -0.56
YBX3-215ENST00000544504 ZBTB22O15209 634 aa11.56□□□□□ -0.56
YBX3-215ENST00000544504 TAF5LO75529 589 aa11.56□□□□□ -0.56
YBX3-215ENST00000544504 TRPA1O75762 1119 aa11.56□□□□□ -0.56
YBX3-215ENST00000544504 HIRAP54198 1017 aaPredicted RBP11.56□□□□□ -0.56
YBX3-215ENST00000544504 AOC3Q16853 763 aa11.56□□□□□ -0.56
YBX3-215ENST00000544504 LRRFIP1Q32MZ4 808 aaKnown RBP11.56□□□□□ -0.56
YBX3-215ENST00000544504 CASC1Q6TDU7 716 aa11.56□□□□□ -0.56
YBX3-215ENST00000544504 C15orf52Q6ZUT6 534 aaKnown RBP11.56□□□□□ -0.56
YBX3-215ENST00000544504 ARAP2Q8WZ64 1704 aa11.56□□□□□ -0.56
YBX3-215ENST00000544504 RNF186Q9NXI6 227 aa11.56□□□□□ -0.56
YBX3-215ENST00000544504 GGA1Q9UJY5 639 aa11.56□□□□□ -0.56
YBX3-215ENST00000544504 ZNF804BA4D1E1 1349 aa11.56□□□□□ -0.56
YBX3-215ENST00000544504 A0A1B0GUL6 1792 aa11.55□□□□□ -0.56
YBX3-215ENST00000544504 TRIM6-TRIM34B2RNG4 842 aa11.55□□□□□ -0.56
YBX3-215ENST00000544504 SEMA3EO15041 775 aa11.55□□□□□ -0.56
YBX3-215ENST00000544504 KIF23Q02241 960 aaPredicted RBP11.55□□□□□ -0.56
YBX3-215ENST00000544504 TNIP1Q15025 636 aa11.55□□□□□ -0.56
YBX3-215ENST00000544504 PKN2Q16513 984 aaKnown RBP11.55□□□□□ -0.56
YBX3-215ENST00000544504 SKAP1Q86WV1 359 aa11.55□□□□□ -0.56
YBX3-215ENST00000544504 VPS37DQ86XT2 251 aa11.55□□□□□ -0.56
YBX3-215ENST00000544504 MPNDQ8N594 471 aa11.55□□□□□ -0.56
YBX3-215ENST00000544504 SUPT20HQ8NEM7 779 aa11.55□□□□□ -0.56
YBX3-215ENST00000544504 PI4K2BQ8TCG2 481 aa11.55□□□□□ -0.56
YBX3-215ENST00000544504 EVI5LQ96CN4 794 aa11.55□□□□□ -0.56
YBX3-215ENST00000544504 EYA3Q99504 573 aa11.55□□□□□ -0.56
YBX3-215ENST00000544504 TLR7Q9NYK1 1049 aaKnown RBP11.55□□□□□ -0.56
YBX3-215ENST00000544504 NSFL1CQ9UNZ2 370 aaKnown RBP11.55□□□□□ -0.56
YBX3-215ENST00000544504 HPS5Q9UPZ3 1129 aa11.55□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms