RNA–Protein interactions for RNA: ENST00000542407.5

PDLIM5-221, Transcript of PDZ and LIM domain 5, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PDLIM5, Length 2,979 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-221ENST00000542407 UBN2Q6ZU65 1347 aa9.37□□□□□ -0.91
PDLIM5-221ENST00000542407 RAD50Q92878 1312 aa9.37□□□□□ -0.91
PDLIM5-221ENST00000542407 LOC102724428A0A0B4J2F2 783 aa9.37□□□□□ -0.91
PDLIM5-221ENST00000542407 KCNQ2O43526 872 aa9.37□□□□□ -0.91
PDLIM5-221ENST00000542407 ADCY5O95622 1261 aa9.37□□□□□ -0.91
PDLIM5-221ENST00000542407 SIK1P57059 783 aa9.37□□□□□ -0.91
PDLIM5-221ENST00000542407 EVI5LQ96CN4 794 aa9.37□□□□□ -0.91
PDLIM5-221ENST00000542407 SNRKQ9NRH2 765 aa9.37□□□□□ -0.91
PDLIM5-221ENST00000542407 CIAO1O76071 339 aa9.37□□□□□ -0.91
PDLIM5-221ENST00000542407 DNAJC21Q5F1R6 531 aaKnown RBP9.37□□□□□ -0.91
PDLIM5-221ENST00000542407 GDPD2Q9HCC8 539 aa9.37□□□□□ -0.91
PDLIM5-221ENST00000542407 ANO2Q9NQ90 1003 aa9.37□□□□□ -0.91
PDLIM5-221ENST00000542407 DIAPH3Q9NSV4 1193 aa9.37□□□□□ -0.91
PDLIM5-221ENST00000542407 ZDHHC9Q9Y397 364 aa9.37□□□□□ -0.91
PDLIM5-221ENST00000542407 MYH3P11055 1940 aa9.36□□□□□ -0.91
PDLIM5-221ENST00000542407 GOLGA6CA6NDK9 693 aa9.36□□□□□ -0.91
PDLIM5-221ENST00000542407 GOLGA6BA6NDN3 693 aa9.36□□□□□ -0.91
PDLIM5-221ENST00000542407 CYP2E1P05181 493 aaPredicted RBP9.36□□□□□ -0.91
PDLIM5-221ENST00000542407 GOLGA6DP0CG33 693 aa9.36□□□□□ -0.91
PDLIM5-221ENST00000542407 HSPA4P34932 840 aa9.36□□□□□ -0.91
PDLIM5-221ENST00000542407 CRKLP46109 303 aaKnown RBP9.36□□□□□ -0.91
PDLIM5-221ENST00000542407 SETDB1Q15047 1291 aa9.36□□□□□ -0.91
PDLIM5-221ENST00000542407 LRRC24Q50LG9 513 aa9.36□□□□□ -0.91
PDLIM5-221ENST00000542407 DDX46Q7L014 1031 aaKnown RBP9.36□□□□□ -0.91
PDLIM5-221ENST00000542407 ZNF34Q8IZ26 560 aa9.36□□□□□ -0.91
PDLIM5-221ENST00000542407 SYNE4Q8N205 404 aa9.36□□□□□ -0.91
PDLIM5-221ENST00000542407 FAM89AQ96GI7 184 aa9.36□□□□□ -0.91
PDLIM5-221ENST00000542407 NGLY1Q96IV0 654 aa9.36□□□□□ -0.91
PDLIM5-221ENST00000542407 KDM4CQ9H3R0 1056 aa9.36□□□□□ -0.91
PDLIM5-221ENST00000542407 GPR108Q9NPR9 543 aa9.36□□□□□ -0.91
PDLIM5-221ENST00000542407 CCDC87Q9NVE4 849 aa9.36□□□□□ -0.91
PDLIM5-221ENST00000542407 GOLGA6AQ9NYA3 693 aa9.36□□□□□ -0.91
PDLIM5-221ENST00000542407 LAMB2P55268 1798 aa9.36□□□□□ -0.91
PDLIM5-221ENST00000542407 DHX16O60231 1041 aaKnown RBP9.36□□□□□ -0.91
PDLIM5-221ENST00000542407 MBD3O95983 291 aa9.36□□□□□ -0.91
PDLIM5-221ENST00000542407 ATP5JP18859 108 aa9.36□□□□□ -0.91
PDLIM5-221ENST00000542407 NOL8Q76FK4 1167 aaKnown RBP9.36□□□□□ -0.91
PDLIM5-221ENST00000542407 DZIP3Q86Y13 1208 aaKnown RBP9.36□□□□□ -0.91
PDLIM5-221ENST00000542407 ATL2Q8NHH9 583 aa9.36□□□□□ -0.91
PDLIM5-221ENST00000542407 ZNF594Q96JF6 807 aaPredicted RBP9.36□□□□□ -0.91
PDLIM5-221ENST00000542407 OGFRQ9NZT2 677 aa9.36□□□□□ -0.91
PDLIM5-221ENST00000542407 DDX60Q8IY21 1712 aaKnown RBP9.36□□□□□ -0.91
PDLIM5-221ENST00000542407 RIC1Q4ADV7 1423 aa9.36□□□□□ -0.91
PDLIM5-221ENST00000542407 EYA2O00167 538 aa9.36□□□□□ -0.91
PDLIM5-221ENST00000542407 KIF1CO43896 1103 aaKnown RBP9.36□□□□□ -0.91
PDLIM5-221ENST00000542407 ATP6V1AP38606 617 aa9.36□□□□□ -0.91
PDLIM5-221ENST00000542407 SPC24Q8NBT2 197 aa9.36□□□□□ -0.91
PDLIM5-221ENST00000542407 DBNDD2Q9BQY9 259 aa9.36□□□□□ -0.91
PDLIM5-221ENST00000542407 PUS3Q9BZE2 481 aaKnown RBP9.36□□□□□ -0.91
PDLIM5-221ENST00000542407 BTAF1O14981 1849 aa9.35□□□□□ -0.91
PDLIM5-221ENST00000542407 IL15P40933 162 aaPredicted RBP9.35□□□□□ -0.91
PDLIM5-221ENST00000542407 CWC27Q6UX04 472 aaKnown RBP9.35□□□□□ -0.91
PDLIM5-221ENST00000542407 CERKQ8TCT0 537 aa9.35□□□□□ -0.91
PDLIM5-221ENST00000542407 SYAP1Q96A49 352 aaPredicted RBP9.35□□□□□ -0.91
PDLIM5-221ENST00000542407 BOLA2Q9H3K6 86 aa9.35□□□□□ -0.91
PDLIM5-221ENST00000542407 CHMP3Q9Y3E7 222 aa9.35□□□□□ -0.91
PDLIM5-221ENST00000542407 ST18O60284 1047 aa9.35□□□□□ -0.91
PDLIM5-221ENST00000542407 CAMTA2O94983 1202 aa9.35□□□□□ -0.91
PDLIM5-221ENST00000542407 GPTP24298 496 aa9.35□□□□□ -0.91
PDLIM5-221ENST00000542407 NOP2P46087 812 aaKnown RBP9.35□□□□□ -0.91
PDLIM5-221ENST00000542407 C1QTNF12Q5T7M4 302 aa9.35□□□□□ -0.91
PDLIM5-221ENST00000542407 CCDC97Q96F63 343 aaPredicted RBP9.35□□□□□ -0.91
PDLIM5-221ENST00000542407 FEZ1Q99689 392 aa9.35□□□□□ -0.91
PDLIM5-221ENST00000542407 PAIP2Q9BPZ3 127 aaKnown RBP9.35□□□□□ -0.91
PDLIM5-221ENST00000542407 TBC1D2BQ9UPU7 963 aa9.35□□□□□ -0.91
PDLIM5-221ENST00000542407 RFX7Q2KHR2 1363 aa9.35□□□□□ -0.91
PDLIM5-221ENST00000542407 MED23Q9ULK4 1368 aa9.35□□□□□ -0.91
PDLIM5-221ENST00000542407 SCN7AQ01118 1682 aa9.35□□□□□ -0.91
PDLIM5-221ENST00000542407 CCDC189A1A4V9 331 aa9.34□□□□□ -0.91
PDLIM5-221ENST00000542407 TNNT1P13805 278 aa9.34□□□□□ -0.91
PDLIM5-221ENST00000542407 PTF1AQ7RTS3 328 aa9.34□□□□□ -0.91
PDLIM5-221ENST00000542407 RPS6KL1Q9Y6S9 549 aa9.34□□□□□ -0.91
PDLIM5-221ENST00000542407 HCLS1P14317 486 aaPredicted RBP9.34□□□□□ -0.91
PDLIM5-221ENST00000542407 CCT2P78371 535 aaKnown RBP9.34□□□□□ -0.91
PDLIM5-221ENST00000542407 BIRC2Q13490 618 aa9.34□□□□□ -0.91
PDLIM5-221ENST00000542407 SDR16C5Q8N3Y7 309 aa9.34□□□□□ -0.91
PDLIM5-221ENST00000542407 NME8Q8N427 588 aa9.34□□□□□ -0.91
PDLIM5-221ENST00000542407 MSL3Q8N5Y2 521 aaKnown RBP9.34□□□□□ -0.91
PDLIM5-221ENST00000542407 TTLL11Q8NHH1 800 aa9.34□□□□□ -0.91
PDLIM5-221ENST00000542407 SMARCC1Q92922 1105 aaPredicted RBP9.34□□□□□ -0.91
PDLIM5-221ENST00000542407 KCNB2Q92953 911 aa9.34□□□□□ -0.91
PDLIM5-221ENST00000542407 EDC3Q96F86 508 aaKnown RBP9.34□□□□□ -0.91
PDLIM5-221ENST00000542407 FAM227BQ96M60 508 aa9.34□□□□□ -0.91
PDLIM5-221ENST00000542407 HAUS7Q99871 368 aa9.34□□□□□ -0.91
PDLIM5-221ENST00000542407 WDR70Q9NW82 654 aa9.34□□□□□ -0.91
PDLIM5-221ENST00000542407 FEZ2Q9UHY8 353 aaPredicted RBP9.34□□□□□ -0.91
PDLIM5-221ENST00000542407 USP21Q9UK80 565 aa9.34□□□□□ -0.91
PDLIM5-221ENST00000542407 SPEF2Q9C093 1822 aa9.34□□□□□ -0.91
PDLIM5-221ENST00000542407 DCAF8L1A6NGE4 600 aa9.33□□□□□ -0.92
PDLIM5-221ENST00000542407 CTSWP56202 376 aa9.33□□□□□ -0.92
PDLIM5-221ENST00000542407 PTH1RQ03431 593 aa9.33□□□□□ -0.92
PDLIM5-221ENST00000542407 NMIQ13287 307 aaPredicted RBP9.33□□□□□ -0.92
PDLIM5-221ENST00000542407 LINC00116Q8NCU8 138 aa9.33□□□□□ -0.92
PDLIM5-221ENST00000542407 ANKRD7Q92527 254 aa9.33□□□□□ -0.92
PDLIM5-221ENST00000542407 MKL1Q969V6 931 aa9.33□□□□□ -0.92
PDLIM5-221ENST00000542407 FAM210AQ96ND0 272 aa9.33□□□□□ -0.92
PDLIM5-221ENST00000542407 NBPF3Q9H094 633 aa9.33□□□□□ -0.92
PDLIM5-221ENST00000542407 PYCARDQ9ULZ3 195 aa9.33□□□□□ -0.92
PDLIM5-221ENST00000542407 ATRNO75882 1429 aa9.33□□□□□ -0.92
PDLIM5-221ENST00000542407 LY75O60449 1722 aa9.33□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 84 ms