RNA–Protein interactions for RNA: ENST00000540925.5

USP28-209, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 4

Gene USP28, Length 561 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-209ENST00000540925 ADM5C9JUS6 153 aa17.71■□□□□ 0.43
USP28-209ENST00000540925 WNT10BO00744 389 aa17.71■□□□□ 0.43
USP28-209ENST00000540925 GNAI2P04899 355 aa17.71■□□□□ 0.43
USP28-209ENST00000540925 NBPF9Q3BBW0 867 aa17.71■□□□□ 0.43
USP28-209ENST00000540925 KIAA0825Q8IV33 1275 aa17.71■□□□□ 0.43
USP28-209ENST00000540925 DZIP1LQ8IYY4 767 aaKnown RBP17.71■□□□□ 0.43
USP28-209ENST00000540925 OGFOD1Q8N543 542 aa17.71■□□□□ 0.43
USP28-209ENST00000540925 MTMR14Q8NCE2 650 aa17.71■□□□□ 0.43
USP28-209ENST00000540925 DCPSQ96C86 337 aaKnown RBP17.71■□□□□ 0.43
USP28-209ENST00000540925 TLL2Q9Y6L7 1015 aa17.71■□□□□ 0.43
USP28-209ENST00000540925 THSD7BQ9C0I4 1608 aa17.7■□□□□ 0.42
USP28-209ENST00000540925 CELF2O95319 508 aaKnown RBP17.7■□□□□ 0.42
USP28-209ENST00000540925 IL15P40933 162 aaPredicted RBP17.7■□□□□ 0.42
USP28-209ENST00000540925 VEGFBP49765 207 aa17.7■□□□□ 0.42
USP28-209ENST00000540925 ANGEL2Q5VTE6 544 aaKnown RBP17.7■□□□□ 0.42
USP28-209ENST00000540925 SAPCD2Q86UD0 394 aa17.7■□□□□ 0.42
USP28-209ENST00000540925 SIL1Q9H173 461 aa17.7■□□□□ 0.42
USP28-209ENST00000540925 ZBTB7BO15156 539 aaPredicted RBP17.69■□□□□ 0.42
USP28-209ENST00000540925 ZBTB22O15209 634 aa17.69■□□□□ 0.42
USP28-209ENST00000540925 SRGAP3O43295 1099 aa17.69■□□□□ 0.42
USP28-209ENST00000540925 LPIN2Q92539 896 aa17.69■□□□□ 0.42
USP28-209ENST00000540925 PNMA6EA0A0J9YXQ4 647 aa17.68■□□□□ 0.42
USP28-209ENST00000540925 HSPA1AP0DMV8 641 aaKnown RBP17.68■□□□□ 0.42
USP28-209ENST00000540925 HSPA1BP0DMV9 641 aaKnown RBP17.68■□□□□ 0.42
USP28-209ENST00000540925 BCAMP50895 628 aa17.68■□□□□ 0.42
USP28-209ENST00000540925 DEFB115Q30KQ5 88 aa17.68■□□□□ 0.42
USP28-209ENST00000540925 HHIPL1Q96JK4 782 aa17.68■□□□□ 0.42
USP28-209ENST00000540925 JAG2Q9Y219 1238 aa17.68■□□□□ 0.42
USP28-209ENST00000540925 IFIT1P09914 478 aaKnown RBP17.67■□□□□ 0.42
USP28-209ENST00000540925 POLA2Q14181 598 aa17.67■□□□□ 0.42
USP28-209ENST00000540925 CAVIN4Q5BKX8 364 aa17.67■□□□□ 0.42
USP28-209ENST00000540925 MFSD14BQ5SR56 506 aa17.67■□□□□ 0.42
USP28-209ENST00000540925 SULF1Q8IWU6 871 aa17.67■□□□□ 0.42
USP28-209ENST00000540925 FTSJ3Q8IY81 847 aaKnown RBP17.67■□□□□ 0.42
USP28-209ENST00000540925 CEP126Q9P2H0 1117 aa17.67■□□□□ 0.42
USP28-209ENST00000540925 HDAC9Q9UKV0 1011 aa17.67■□□□□ 0.42
USP28-209ENST00000540925 ABT1Q9ULW3 272 aaKnown RBP17.67■□□□□ 0.42
USP28-209ENST00000540925 COL1A1P02452 1464 aaPredicted RBP17.67■□□□□ 0.42
USP28-209ENST00000540925 SLC5A1P13866 664 aa17.66■□□□□ 0.42
USP28-209ENST00000540925 GRIK5Q16478 980 aa17.66■□□□□ 0.42
USP28-209ENST00000540925 CDCA5Q96FF9 252 aa17.66■□□□□ 0.42
USP28-209ENST00000540925 PCDHAC2Q9Y5I4 1007 aa17.66■□□□□ 0.42
USP28-209ENST00000540925 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP17.66■□□□□ 0.42
USP28-209ENST00000540925 ECM29Q5VYK3 1845 aa17.65■□□□□ 0.42
USP28-209ENST00000540925 SPDYE2BA6NHP3 402 aa17.65■□□□□ 0.42
USP28-209ENST00000540925 SPDYE6P0CI01 402 aa17.65■□□□□ 0.42
USP28-209ENST00000540925 ATP2B3Q16720 1220 aa17.65■□□□□ 0.42
USP28-209ENST00000540925 ITPRIPQ8IWB1 547 aa17.65■□□□□ 0.42
USP28-209ENST00000540925 PANK1Q8TE04 598 aa17.65■□□□□ 0.42
USP28-209ENST00000540925 SSH3Q8TE77 659 aa17.65■□□□□ 0.42
USP28-209ENST00000540925 IQSEC3Q9UPP2 1182 aaPredicted RBP17.65■□□□□ 0.42
USP28-209ENST00000540925 AOX1Q06278 1338 aa17.65■□□□□ 0.42
USP28-209ENST00000540925 WDR33Q9C0J8 1336 aaKnown RBP17.65■□□□□ 0.42
USP28-209ENST00000540925 F8W031 263 aaPredicted RBP17.64■□□□□ 0.41
USP28-209ENST00000540925 ATP8B2P98198 1209 aa17.64■□□□□ 0.41
USP28-209ENST00000540925 VPS37DQ86XT2 251 aa17.64■□□□□ 0.41
USP28-209ENST00000540925 ZNF408Q9H9D4 720 aa17.64■□□□□ 0.41
USP28-209ENST00000540925 RCAN3Q9UKA8 241 aa17.64■□□□□ 0.41
USP28-209ENST00000540925 SCAF8Q9UPN6 1271 aaKnown RBP17.64■□□□□ 0.41
USP28-209ENST00000540925 DLGAP5Q15398 846 aa17.63■□□□□ 0.41
USP28-209ENST00000540925 CFAP100Q494V2 611 aa17.63■□□□□ 0.41
USP28-209ENST00000540925 TBC1D22AQ8WUA7 517 aa17.63■□□□□ 0.41
USP28-209ENST00000540925 CAPNS2Q96L46 248 aa17.63■□□□□ 0.41
USP28-209ENST00000540925 PRMT6Q96LA8 375 aaPredicted RBP17.63■□□□□ 0.41
USP28-209ENST00000540925 GBA2Q9HCG7 927 aaPredicted RBP17.63■□□□□ 0.41
USP28-209ENST00000540925 SERPINA10Q9UK55 444 aa17.63■□□□□ 0.41
USP28-209ENST00000540925 PAPPA2Q9BXP8 1791 aa17.62■□□□□ 0.41
USP28-209ENST00000540925 ADORA1P30542 326 aa17.62■□□□□ 0.41
USP28-209ENST00000540925 TFCP2Q12800 502 aa17.62■□□□□ 0.41
USP28-209ENST00000540925 CYP4F22Q6NT55 531 aa17.62■□□□□ 0.41
USP28-209ENST00000540925 APOBEC3FQ8IUX4 373 aaKnown RBP17.62■□□□□ 0.41
USP28-209ENST00000540925 C1orf115Q9H7X2 142 aa17.62■□□□□ 0.41
USP28-209ENST00000540925 TTF2Q9UNY4 1162 aaKnown RBP17.62■□□□□ 0.41
USP28-209ENST00000540925 MYH13Q9UKX3 1938 aa17.61■□□□□ 0.41
USP28-209ENST00000540925 PHKA1P46020 1223 aa17.61■□□□□ 0.41
USP28-209ENST00000540925 HDLBPQ00341 1268 aaKnown RBP17.61■□□□□ 0.41
USP28-209ENST00000540925 CHAF1AQ13111 956 aaPredicted RBP17.61■□□□□ 0.41
USP28-209ENST00000540925 MRIQ9BWK5 157 aa17.61■□□□□ 0.41
USP28-209ENST00000540925 SUGT1Q9Y2Z0 365 aa17.61■□□□□ 0.41
USP28-209ENST00000540925 MS4A1P11836 297 aa17.6■□□□□ 0.41
USP28-209ENST00000540925 ECE1P42892 770 aa17.6■□□□□ 0.41
USP28-209ENST00000540925 HUNKP57058 714 aa17.6■□□□□ 0.41
USP28-209ENST00000540925 TIMM10P62072 90 aa17.6■□□□□ 0.41
USP28-209ENST00000540925 FKBP1BP68106 108 aa17.6■□□□□ 0.41
USP28-209ENST00000540925 WBP1LQ9NX94 342 aa17.6■□□□□ 0.41
USP28-209ENST00000540925 NOP58Q9Y2X3 529 aaKnown RBP17.6■□□□□ 0.41
USP28-209ENST00000540925 PDS5AQ29RF7 1337 aaKnown RBP17.59■□□□□ 0.41
USP28-209ENST00000540925 SALL1Q9NSC2 1324 aa17.59■□□□□ 0.41
USP28-209ENST00000540925 A0A1B0GUL7 405 aa17.59■□□□□ 0.41
USP28-209ENST00000540925 FAM155AB1AL88 458 aaPredicted RBP17.59■□□□□ 0.41
USP28-209ENST00000540925 SEMA3EO15041 775 aa17.59■□□□□ 0.41
USP28-209ENST00000540925 MVPQ14764 893 aaKnown RBP17.59■□□□□ 0.41
USP28-209ENST00000540925 PRAMEF18Q5VWM3 479 aa17.59■□□□□ 0.41
USP28-209ENST00000540925 CCDC102BQ68D86 513 aa17.59■□□□□ 0.41
USP28-209ENST00000540925 CEP85Q6P2H3 762 aa17.59■□□□□ 0.41
USP28-209ENST00000540925 C2orf69Q8N8R5 385 aa17.59■□□□□ 0.41
USP28-209ENST00000540925 WDR66Q8TBY9 1149 aa17.59■□□□□ 0.41
USP28-209ENST00000540925 AKAP2Q9Y2D5 859 aa17.59■□□□□ 0.41
USP28-209ENST00000540925 SSC5DA1L4H1 1573 aa17.58■□□□□ 0.41
USP28-209ENST00000540925 FRAT2O75474 233 aaPredicted RBP17.58■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms