RNA–Protein interactions for RNA: ENST00000538235.2

CHFR-216, Transcript of checkpoint with forkhead and ring finger domains, humanhuman

TSL 3

Gene CHFR, Length 687 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHFR-216ENST00000538235 RASGRF1Q13972 1273 aa16.18■□□□□ 0.18
CHFR-216ENST00000538235 CCDC102BQ68D86 513 aa16.18■□□□□ 0.18
CHFR-216ENST00000538235 RSBN1LQ6PCB5 846 aaPredicted RBP16.18■□□□□ 0.18
CHFR-216ENST00000538235 USP17L1Q7RTZ2 530 aa16.18■□□□□ 0.18
CHFR-216ENST00000538235 TAF1DQ9H5J8 278 aaPredicted RBP16.18■□□□□ 0.18
CHFR-216ENST00000538235 GPR108Q9NPR9 543 aa16.18■□□□□ 0.18
CHFR-216ENST00000538235 ASTN2O75129 1339 aaPredicted RBP16.18■□□□□ 0.18
CHFR-216ENST00000538235 STRIP1Q5VSL9 837 aa16.17■□□□□ 0.18
CHFR-216ENST00000538235 FBXW7Q969H0 707 aa16.17■□□□□ 0.18
CHFR-216ENST00000538235 CHMP4BQ9H444 224 aaKnown RBP16.17■□□□□ 0.18
CHFR-216ENST00000538235 HMMRO75330 724 aa16.16■□□□□ 0.18
CHFR-216ENST00000538235 DPY19L2Q6NUT2 758 aa16.16■□□□□ 0.18
CHFR-216ENST00000538235 MICALL2Q8IY33 904 aa16.16■□□□□ 0.18
CHFR-216ENST00000538235 OTUD7AQ8TE49 926 aaPredicted RBP16.16■□□□□ 0.18
CHFR-216ENST00000538235 NDUFB9Q9Y6M9 179 aa16.16■□□□□ 0.18
CHFR-216ENST00000538235 ARID4AP29374 1257 aaPredicted RBP16.15■□□□□ 0.18
CHFR-216ENST00000538235 EPHX2P34913 555 aa16.15■□□□□ 0.18
CHFR-216ENST00000538235 MCAMP43121 646 aa16.15■□□□□ 0.18
CHFR-216ENST00000538235 CHAF1AQ13111 956 aaPredicted RBP16.15■□□□□ 0.18
CHFR-216ENST00000538235 HDAC1Q13547 482 aaPredicted RBP16.15■□□□□ 0.18
CHFR-216ENST00000538235 TNIP1Q15025 636 aa16.15■□□□□ 0.18
CHFR-216ENST00000538235 TTLL5Q6EMB2 1281 aa16.15■□□□□ 0.18
CHFR-216ENST00000538235 SAMD7Q7Z3H4 446 aa16.15■□□□□ 0.18
CHFR-216ENST00000538235 NEUROD6Q96NK8 337 aa16.15■□□□□ 0.18
CHFR-216ENST00000538235 TRPM7Q96QT4 1865 aa16.14■□□□□ 0.17
CHFR-216ENST00000538235 G3V3G9 751 aa16.14■□□□□ 0.17
CHFR-216ENST00000538235 DCAF8Q5TAQ9 597 aa16.14■□□□□ 0.17
CHFR-216ENST00000538235 AACSQ86V21 672 aa16.14■□□□□ 0.17
CHFR-216ENST00000538235 KIAA0825Q8IV33 1275 aa16.14■□□□□ 0.17
CHFR-216ENST00000538235 ZNF384Q8TF68 577 aa16.14■□□□□ 0.17
CHFR-216ENST00000538235 KIF1BPQ96EK5 621 aa16.14■□□□□ 0.17
CHFR-216ENST00000538235 HMG20BQ9P0W2 317 aa16.14■□□□□ 0.17
CHFR-216ENST00000538235 CNOT7Q9UIV1 285 aaKnown RBP16.14■□□□□ 0.17
CHFR-216ENST00000538235 HACL1Q9UJ83 578 aa16.14■□□□□ 0.17
CHFR-216ENST00000538235 AKAP2Q9Y2D5 859 aa16.14■□□□□ 0.17
CHFR-216ENST00000538235 SALL3Q9BXA9 1300 aa16.14■□□□□ 0.17
CHFR-216ENST00000538235 FOCADQ5VW36 1801 aa16.13■□□□□ 0.17
CHFR-216ENST00000538235 VEGFAP15692 232 aaPredicted RBP16.13■□□□□ 0.17
CHFR-216ENST00000538235 ZNF280AP59817 542 aaPredicted RBP16.13■□□□□ 0.17
CHFR-216ENST00000538235 DLK2Q6UY11 383 aa16.13■□□□□ 0.17
CHFR-216ENST00000538235 DPF2Q92785 391 aa16.13■□□□□ 0.17
CHFR-216ENST00000538235 F8W031 263 aaPredicted RBP16.12■□□□□ 0.17
CHFR-216ENST00000538235 ZBTB22O15209 634 aa16.12■□□□□ 0.17
CHFR-216ENST00000538235 PRDX5P30044 214 aa16.12■□□□□ 0.17
CHFR-216ENST00000538235 TBC1D10BQ4KMP7 808 aaPredicted RBP16.12■□□□□ 0.17
CHFR-216ENST00000538235 CAVIN4Q5BKX8 364 aa16.12■□□□□ 0.17
CHFR-216ENST00000538235 MFSD14BQ5SR56 506 aa16.12■□□□□ 0.17
CHFR-216ENST00000538235 TSHZ3Q63HK5 1081 aa16.12■□□□□ 0.17
CHFR-216ENST00000538235 ERC1Q8IUD2 1116 aa16.12■□□□□ 0.17
CHFR-216ENST00000538235 SMC5Q8IY18 1101 aa16.12■□□□□ 0.17
CHFR-216ENST00000538235 C16orf71Q8IYS4 520 aaPredicted RBP16.12■□□□□ 0.17
CHFR-216ENST00000538235 AGBL3Q8NEM8 1001 aa16.12■□□□□ 0.17
CHFR-216ENST00000538235 ZBED3Q96IU2 234 aaPredicted RBP16.12■□□□□ 0.17
CHFR-216ENST00000538235 BCL11AQ9H165 835 aa16.12■□□□□ 0.17
CHFR-216ENST00000538235 PAPPA2Q9BXP8 1791 aa16.11■□□□□ 0.17
CHFR-216ENST00000538235 RAB11FIP3O75154 756 aa16.11■□□□□ 0.17
CHFR-216ENST00000538235 RPS12P25398 132 aaKnown RBP16.11■□□□□ 0.17
CHFR-216ENST00000538235 FMR1Q06787 632 aaKnown RBP eCLIP16.11■□□□□ 0.17
CHFR-216ENST00000538235 POTEDQ86YR6 584 aa16.11■□□□□ 0.17
CHFR-216ENST00000538235 SNRKQ9NRH2 765 aa16.11■□□□□ 0.17
CHFR-216ENST00000538235 SCAF8Q9UPN6 1271 aaKnown RBP16.11■□□□□ 0.17
CHFR-216ENST00000538235 AK9Q5TCS8 1911 aa16.1■□□□□ 0.17
CHFR-216ENST00000538235 FKBP1AP62942 108 aaKnown RBP16.1■□□□□ 0.17
CHFR-216ENST00000538235 HSP90AB4PQ58FF6 505 aa16.1■□□□□ 0.17
CHFR-216ENST00000538235 TBC1D9Q6ZT07 1266 aa16.1■□□□□ 0.17
CHFR-216ENST00000538235 VPS37DQ86XT2 251 aa16.1■□□□□ 0.17
CHFR-216ENST00000538235 LRRCC1Q9C099 1032 aa16.1■□□□□ 0.17
CHFR-216ENST00000538235 ADARB2Q9NS39 739 aaKnown RBP16.1■□□□□ 0.17
CHFR-216ENST00000538235 SIPA1L1O43166 1804 aa16.1■□□□□ 0.17
CHFR-216ENST00000538235 DDX60LQ5H9U9 1706 aaKnown RBP16.09■□□□□ 0.17
CHFR-216ENST00000538235 IQCA1LA6NCM1 817 aa16.09■□□□□ 0.17
CHFR-216ENST00000538235 USP17L8P0C7I0 530 aa16.09■□□□□ 0.17
CHFR-216ENST00000538235 KIF4BQ2VIQ3 1234 aa16.09■□□□□ 0.17
CHFR-216ENST00000538235 EAPPQ56P03 285 aaPredicted RBP16.09■□□□□ 0.17
CHFR-216ENST00000538235 EDC3Q96F86 508 aaKnown RBP16.09■□□□□ 0.17
CHFR-216ENST00000538235 ANTXR1Q9H6X2 564 aa16.09■□□□□ 0.17
CHFR-216ENST00000538235 PIH1D3Q9NQM4 214 aaKnown RBP16.09■□□□□ 0.17
CHFR-216ENST00000538235 PDS5AQ29RF7 1337 aaKnown RBP16.09■□□□□ 0.17
CHFR-216ENST00000538235 SALL1Q9NSC2 1324 aa16.09■□□□□ 0.17
CHFR-216ENST00000538235 OTOFQ9HC10 1997 aa16.09■□□□□ 0.17
CHFR-216ENST00000538235 CYP2E1P05181 493 aaPredicted RBP16.08■□□□□ 0.16
CHFR-216ENST00000538235 LMOD1P29536 600 aaPredicted RBP16.08■□□□□ 0.16
CHFR-216ENST00000538235 ZAP70P43403 619 aa16.08■□□□□ 0.16
CHFR-216ENST00000538235 AAMPQ13685 434 aa16.08■□□□□ 0.16
CHFR-216ENST00000538235 DIXDC1Q155Q3 683 aa16.08■□□□□ 0.16
CHFR-216ENST00000538235 NBPF9Q3BBW0 867 aa16.08■□□□□ 0.16
CHFR-216ENST00000538235 RBM26Q5T8P6 1007 aaKnown RBP16.08■□□□□ 0.16
CHFR-216ENST00000538235 SPATA5Q8NB90 893 aa16.08■□□□□ 0.16
CHFR-216ENST00000538235 MYOZ2Q9NPC6 264 aa16.08■□□□□ 0.16
CHFR-216ENST00000538235 MYO3BQ8WXR4 1341 aa16.08■□□□□ 0.16
CHFR-216ENST00000538235 SEMA3EO15041 775 aa16.07■□□□□ 0.16
CHFR-216ENST00000538235 CHGBP05060 677 aa16.07■□□□□ 0.16
CHFR-216ENST00000538235 TTC39AQ5SRH9 613 aa16.07■□□□□ 0.16
CHFR-216ENST00000538235 MAP1SQ66K74 1059 aaPredicted RBP16.07■□□□□ 0.16
CHFR-216ENST00000538235 SKAP1Q86WV1 359 aa16.07■□□□□ 0.16
CHFR-216ENST00000538235 CLASRPQ8N2M8 674 aaKnown RBP16.07■□□□□ 0.16
CHFR-216ENST00000538235 ZNF512BQ96KM6 892 aaPredicted RBP16.07■□□□□ 0.16
CHFR-216ENST00000538235 DENND2AQ9ULE3 1009 aa16.07■□□□□ 0.16
CHFR-216ENST00000538235 TTF2Q9UNY4 1162 aaKnown RBP16.07■□□□□ 0.16
CHFR-216ENST00000538235 SSC5DA1L4H1 1573 aa16.06■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms