RNA–Protein interactions for RNA: ENST00000536274.5

MCF2-210, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene MCF2, Length 3,461 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-210ENST00000536274 CDC45O75419 566 aa4.35□□□□□ -1.71
MCF2-210ENST00000536274 ECEL1O95672 775 aa4.35□□□□□ -1.71
MCF2-210ENST00000536274 LIG1P18858 919 aa4.35□□□□□ -1.71
MCF2-210ENST00000536274 CDC25CP30307 473 aa4.35□□□□□ -1.71
MCF2-210ENST00000536274 ZNF75DP51815 510 aa4.35□□□□□ -1.71
MCF2-210ENST00000536274 DNM1Q05193 864 aaKnown RBP4.35□□□□□ -1.71
MCF2-210ENST00000536274 GPR153Q6NV75 609 aa4.35□□□□□ -1.71
MCF2-210ENST00000536274 N4BP2L2Q92802 583 aaPredicted RBP4.35□□□□□ -1.71
MCF2-210ENST00000536274 ZCWPW1Q9H0M4 648 aa4.35□□□□□ -1.71
MCF2-210ENST00000536274 DNAJC25Q9H1X3 360 aa4.35□□□□□ -1.71
MCF2-210ENST00000536274 PRDM16Q9HAZ2 1276 aa4.35□□□□□ -1.71
MCF2-210ENST00000536274 ORC3Q9UBD5 711 aaPredicted RBP4.35□□□□□ -1.71
MCF2-210ENST00000536274 FAN1Q9Y2M0 1017 aa4.35□□□□□ -1.71
MCF2-210ENST00000536274 MRVI1Q9Y6F6 885 aa4.35□□□□□ -1.71
MCF2-210ENST00000536274 MYOM1P52179 1685 aa4.35□□□□□ -1.71
MCF2-210ENST00000536274 MYO1FO00160 1098 aa4.35□□□□□ -1.71
MCF2-210ENST00000536274 ELL2O00472 640 aaPredicted RBP4.35□□□□□ -1.71
MCF2-210ENST00000536274 KIF1CO43896 1103 aaKnown RBP4.35□□□□□ -1.71
MCF2-210ENST00000536274 TFRCP02786 760 aaKnown RBP4.35□□□□□ -1.71
MCF2-210ENST00000536274 CORO7P57737 925 aa4.35□□□□□ -1.71
MCF2-210ENST00000536274 ACTN3Q08043 901 aaPredicted RBP4.35□□□□□ -1.71
MCF2-210ENST00000536274 TBC1D8BQ0IIM8 1120 aa4.35□□□□□ -1.71
MCF2-210ENST00000536274 GPS2Q13227 327 aa4.35□□□□□ -1.71
MCF2-210ENST00000536274 HDAC1Q13547 482 aaPredicted RBP4.35□□□□□ -1.71
MCF2-210ENST00000536274 LEKR1Q6ZMV7 388 aa4.35□□□□□ -1.71
MCF2-210ENST00000536274 FAM196AQ6ZSG2 479 aa4.35□□□□□ -1.71
MCF2-210ENST00000536274 NYAP1Q6ZVC0 841 aa4.35□□□□□ -1.71
MCF2-210ENST00000536274 SPNS2Q8IVW8 549 aa4.35□□□□□ -1.71
MCF2-210ENST00000536274 LRRC8AQ8IWT6 810 aa4.35□□□□□ -1.71
MCF2-210ENST00000536274 TESK2Q96S53 571 aa4.35□□□□□ -1.71
MCF2-210ENST00000536274 POLD4Q9HCU8 107 aa4.35□□□□□ -1.71
MCF2-210ENST00000536274 AKAP2Q9Y2D5 859 aa4.35□□□□□ -1.71
MCF2-210ENST00000536274 EIF4E1BA6NMX2 242 aaKnown RBP4.34□□□□□ -1.71
MCF2-210ENST00000536274 HTATSF1O43719 755 aaKnown RBP4.34□□□□□ -1.71
MCF2-210ENST00000536274 LGR5O75473 907 aa4.34□□□□□ -1.71
MCF2-210ENST00000536274 UPP2O95045 317 aa4.34□□□□□ -1.71
MCF2-210ENST00000536274 CPA1P15085 419 aa4.34□□□□□ -1.71
MCF2-210ENST00000536274 FERMT3Q86UX7 667 aa4.34□□□□□ -1.71
MCF2-210ENST00000536274 SIRT2Q8IXJ6 389 aa4.34□□□□□ -1.71
MCF2-210ENST00000536274 PARD3BQ8TEW8 1205 aa4.34□□□□□ -1.71
MCF2-210ENST00000536274 PPM1EQ8WY54 764 aa4.34□□□□□ -1.71
MCF2-210ENST00000536274 MIEF2Q96C03 454 aa4.34□□□□□ -1.71
MCF2-210ENST00000536274 CWC22Q9HCG8 908 aaKnown RBP4.34□□□□□ -1.71
MCF2-210ENST00000536274 WDR70Q9NW82 654 aa4.34□□□□□ -1.71
MCF2-210ENST00000536274 DNAI1Q9UI46 699 aa4.34□□□□□ -1.71
MCF2-210ENST00000536274 SBNO2Q9Y2G9 1366 aa4.34□□□□□ -1.71
MCF2-210ENST00000536274 CCDC69A6NI79 296 aa4.34□□□□□ -1.71
MCF2-210ENST00000536274 TK2O00142 265 aa4.34□□□□□ -1.71
MCF2-210ENST00000536274 URI1O94763 535 aaPredicted RBP4.34□□□□□ -1.71
MCF2-210ENST00000536274 SMC2O95347 1197 aa4.34□□□□□ -1.71
MCF2-210ENST00000536274 SCRN1Q12765 414 aa4.34□□□□□ -1.71
MCF2-210ENST00000536274 VARS2Q5ST30 1063 aaKnown RBP4.34□□□□□ -1.71
MCF2-210ENST00000536274 PPP1R3FQ6ZSY5 799 aaPredicted RBP4.34□□□□□ -1.71
MCF2-210ENST00000536274 UBXN4Q92575 508 aa4.34□□□□□ -1.71
MCF2-210ENST00000536274 KCNB2Q92953 911 aa4.34□□□□□ -1.71
MCF2-210ENST00000536274 ZBTB10Q96DT7 871 aa4.34□□□□□ -1.71
MCF2-210ENST00000536274 AK7Q96M32 723 aa4.34□□□□□ -1.71
MCF2-210ENST00000536274 ZBTB40Q9NUA8 1239 aa4.34□□□□□ -1.71
MCF2-210ENST00000536274 SPATA31A1Q5TZJ5 1347 aa4.34□□□□□ -1.71
MCF2-210ENST00000536274 COL5A2P05997 1499 aaPredicted RBP4.34□□□□□ -1.71
MCF2-210ENST00000536274 PLSCR1O15162 318 aa4.34□□□□□ -1.72
MCF2-210ENST00000536274 TYRO3Q06418 890 aa4.34□□□□□ -1.72
MCF2-210ENST00000536274 USP4Q13107 963 aa4.34□□□□□ -1.72
MCF2-210ENST00000536274 SNW1Q13573 536 aaKnown RBP4.34□□□□□ -1.72
MCF2-210ENST00000536274 SWT1Q5T5J6 900 aaKnown RBP4.34□□□□□ -1.72
MCF2-210ENST00000536274 CC2D1AQ6P1N0 951 aaPredicted RBP4.34□□□□□ -1.72
MCF2-210ENST00000536274 TADA2BQ86TJ2 420 aa4.34□□□□□ -1.72
MCF2-210ENST00000536274 SUGP1Q8IWZ8 645 aaKnown RBP4.34□□□□□ -1.72
MCF2-210ENST00000536274 SEPT12Q8IYM1 358 aa4.34□□□□□ -1.72
MCF2-210ENST00000536274 MNS1Q8NEH6 495 aa4.34□□□□□ -1.72
MCF2-210ENST00000536274 GIMAP7Q8NHV1 300 aa4.34□□□□□ -1.72
MCF2-210ENST00000536274 KIF9Q9HAQ2 790 aa4.34□□□□□ -1.72
MCF2-210ENST00000536274 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP4.34□□□□□ -1.72
MCF2-210ENST00000536274 RAD50Q92878 1312 aa4.34□□□□□ -1.72
MCF2-210ENST00000536274 NFAT5O94916 1531 aa4.33□□□□□ -1.72
MCF2-210ENST00000536274 CRB1P82279 1406 aa4.33□□□□□ -1.72
MCF2-210ENST00000536274 ENO4A6NNW6 628 aa4.33□□□□□ -1.72
MCF2-210ENST00000536274 SDSP20132 328 aa4.33□□□□□ -1.72
MCF2-210ENST00000536274 EVCP57679 992 aa4.33□□□□□ -1.72
MCF2-210ENST00000536274 CCZ1BP86790 482 aa4.33□□□□□ -1.72
MCF2-210ENST00000536274 CCZ1P86791 482 aaPredicted RBP4.33□□□□□ -1.72
MCF2-210ENST00000536274 GBP6Q6ZN66 633 aa4.33□□□□□ -1.72
MCF2-210ENST00000536274 KRT28Q7Z3Y7 464 aa4.33□□□□□ -1.72
MCF2-210ENST00000536274 HOMER1Q86YM7 354 aa4.33□□□□□ -1.72
MCF2-210ENST00000536274 KCTD17Q8N5Z5 321 aa4.33□□□□□ -1.72
MCF2-210ENST00000536274 CEP120Q8N960 986 aa4.33□□□□□ -1.72
MCF2-210ENST00000536274 JMYQ8N9B5 988 aa4.33□□□□□ -1.72
MCF2-210ENST00000536274 CAMKK2Q96RR4 588 aa4.33□□□□□ -1.72
MCF2-210ENST00000536274 HINFPQ9BQA5 517 aa4.33□□□□□ -1.72
MCF2-210ENST00000536274 TMEM165Q9HC07 324 aa4.33□□□□□ -1.72
MCF2-210ENST00000536274 TNS2Q63HR2 1409 aa4.33□□□□□ -1.72
MCF2-210ENST00000536274 PLEKHG3A1L390 1219 aa4.33□□□□□ -1.72
MCF2-210ENST00000536274 ERLIN2O94905 339 aa4.33□□□□□ -1.72
MCF2-210ENST00000536274 PYGLP06737 847 aa4.33□□□□□ -1.72
MCF2-210ENST00000536274 GNAI3P08754 354 aa4.33□□□□□ -1.72
MCF2-210ENST00000536274 RPSAP08865 295 aaKnown RBP4.33□□□□□ -1.72
MCF2-210ENST00000536274 TPM1P09493 284 aa4.33□□□□□ -1.72
MCF2-210ENST00000536274 CEBPZQ03701 1054 aaKnown RBP4.33□□□□□ -1.72
MCF2-210ENST00000536274 MMRN1Q13201 1228 aa4.33□□□□□ -1.72
MCF2-210ENST00000536274 SLFNL1Q499Z3 407 aa4.33□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms