RNA–Protein interactions for RNA: ENST00000536011.5

RTN3-207, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 992 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-207ENST00000536011 MRPL50Q8N5N7 158 aaKnown RBP16.53■□□□□ 0.24
RTN3-207ENST00000536011 ABHD8Q96I13 439 aa16.53■□□□□ 0.24
RTN3-207ENST00000536011 MYO1BO43795 1136 aa16.52■□□□□ 0.24
RTN3-207ENST00000536011 PLIN1O60240 522 aa16.52■□□□□ 0.24
RTN3-207ENST00000536011 UBE4AQ14139 1066 aa16.52■□□□□ 0.24
RTN3-207ENST00000536011 SUCLG2Q96I99 432 aa16.52■□□□□ 0.24
RTN3-207ENST00000536011 ZNF594Q96JF6 807 aaPredicted RBP16.52■□□□□ 0.24
RTN3-207ENST00000536011 MROH5Q6ZUA9 1318 aa16.51■□□□□ 0.23
RTN3-207ENST00000536011 SNAP23O00161 211 aa16.51■□□□□ 0.23
RTN3-207ENST00000536011 NBPF7P0C2Y1 421 aaPredicted RBP16.51■□□□□ 0.23
RTN3-207ENST00000536011 ALDH1L2Q3SY69 923 aa16.51■□□□□ 0.23
RTN3-207ENST00000536011 RASAL3Q86YV0 1011 aa16.51■□□□□ 0.23
RTN3-207ENST00000536011 MTMR14Q8NCE2 650 aa16.51■□□□□ 0.23
RTN3-207ENST00000536011 ZIC5Q96T25 663 aa16.51■□□□□ 0.23
RTN3-207ENST00000536011 SLFN5Q08AF3 891 aa16.5■□□□□ 0.23
RTN3-207ENST00000536011 ARMC9Q7Z3E5 817 aa16.5■□□□□ 0.23
RTN3-207ENST00000536011 SSH1Q8WYL5 1049 aa16.5■□□□□ 0.23
RTN3-207ENST00000536011 ZBED3Q96IU2 234 aaPredicted RBP16.5■□□□□ 0.23
RTN3-207ENST00000536011 BICC1Q9H694 974 aaKnown RBP16.5■□□□□ 0.23
RTN3-207ENST00000536011 FOXD4L1Q9NU39 408 aa16.5■□□□□ 0.23
RTN3-207ENST00000536011 PPP2R3BQ9Y5P8 575 aa16.5■□□□□ 0.23
RTN3-207ENST00000536011 AKAP11Q9UKA4 1901 aa16.49■□□□□ 0.23
RTN3-207ENST00000536011 CT47B1P0C2W7 299 aaPredicted RBP16.49■□□□□ 0.23
RTN3-207ENST00000536011 HIBADHP31937 336 aaKnown RBP16.49■□□□□ 0.23
RTN3-207ENST00000536011 RABL6Q3YEC7 729 aaPredicted RBP16.49■□□□□ 0.23
RTN3-207ENST00000536011 SCAF8Q9UPN6 1271 aaKnown RBP16.49■□□□□ 0.23
RTN3-207ENST00000536011 UBE2Q2LH0YL09 131 aa16.48■□□□□ 0.23
RTN3-207ENST00000536011 PRAMEF18Q5VWM3 479 aa16.48■□□□□ 0.23
RTN3-207ENST00000536011 VPS37DQ86XT2 251 aa16.48■□□□□ 0.23
RTN3-207ENST00000536011 CERS5Q8N5B7 392 aa16.48■□□□□ 0.23
RTN3-207ENST00000536011 KAZALD1Q96I82 304 aa16.48■□□□□ 0.23
RTN3-207ENST00000536011 CSRNP1Q96S65 589 aa16.48■□□□□ 0.23
RTN3-207ENST00000536011 SMC4Q9NTJ3 1288 aa16.48■□□□□ 0.23
RTN3-207ENST00000536011 RNF186Q9NXI6 227 aa16.48■□□□□ 0.23
RTN3-207ENST00000536011 FAM205AQ6ZU69 1335 aa16.47■□□□□ 0.23
RTN3-207ENST00000536011 ECM29Q5VYK3 1845 aa16.47■□□□□ 0.23
RTN3-207ENST00000536011 SPDYE2BA6NHP3 402 aa16.47■□□□□ 0.23
RTN3-207ENST00000536011 F8W031 263 aaPredicted RBP16.47■□□□□ 0.23
RTN3-207ENST00000536011 TRPA1O75762 1119 aa16.47■□□□□ 0.23
RTN3-207ENST00000536011 SPDYE6P0CI01 402 aa16.47■□□□□ 0.23
RTN3-207ENST00000536011 CFAP100Q494V2 611 aa16.47■□□□□ 0.23
RTN3-207ENST00000536011 METTL24Q5JXM2 366 aa16.47■□□□□ 0.23
RTN3-207ENST00000536011 DEFB129Q9H1M3 183 aa16.47■□□□□ 0.23
RTN3-207ENST00000536011 CASP8AP2Q9UKL3 1982 aa16.46■□□□□ 0.23
RTN3-207ENST00000536011 CCER2I3L3R5 266 aa16.46■□□□□ 0.23
RTN3-207ENST00000536011 RBM5P52756 815 aaKnown RBP eCLIP16.46■□□□□ 0.23
RTN3-207ENST00000536011 DGKZQ13574 1117 aa16.46■□□□□ 0.23
RTN3-207ENST00000536011 CAVIN4Q5BKX8 364 aa16.46■□□□□ 0.23
RTN3-207ENST00000536011 MFSD14BQ5SR56 506 aa16.46■□□□□ 0.23
RTN3-207ENST00000536011 MOB2Q70IA6 237 aa16.46■□□□□ 0.23
RTN3-207ENST00000536011 TDRD7Q8NHU6 1098 aaKnown RBP16.46■□□□□ 0.23
RTN3-207ENST00000536011 MCOLN1Q9GZU1 580 aa16.46■□□□□ 0.23
RTN3-207ENST00000536011 RIPOR2Q9Y4F9 1068 aa16.46■□□□□ 0.23
RTN3-207ENST00000536011 PPP1R12BO60237 982 aaPredicted RBP16.45■□□□□ 0.22
RTN3-207ENST00000536011 FRAT2O75474 233 aaPredicted RBP16.45■□□□□ 0.22
RTN3-207ENST00000536011 GYG1P46976 350 aa16.45■□□□□ 0.22
RTN3-207ENST00000536011 SREBF2Q12772 1141 aa16.45■□□□□ 0.22
RTN3-207ENST00000536011 TNFAIP1Q13829 316 aa16.45■□□□□ 0.22
RTN3-207ENST00000536011 SUPT20HL1Q3ZLR7 823 aa16.45■□□□□ 0.22
RTN3-207ENST00000536011 ANKRD44Q8N8A2 993 aa16.45■□□□□ 0.22
RTN3-207ENST00000536011 FAM84BQ96KN1 310 aaPredicted RBP16.45■□□□□ 0.22
RTN3-207ENST00000536011 PUS3Q9BZE2 481 aaKnown RBP16.45■□□□□ 0.22
RTN3-207ENST00000536011 SERPINA10Q9UK55 444 aa16.45■□□□□ 0.22
RTN3-207ENST00000536011 HDAC5Q9UQL6 1122 aa16.45■□□□□ 0.22
RTN3-207ENST00000536011 ARAP2Q8WZ64 1704 aa16.45■□□□□ 0.22
RTN3-207ENST00000536011 UNCXA6NJT0 531 aa16.44■□□□□ 0.22
RTN3-207ENST00000536011 CCDC85CA6NKD9 419 aa16.44■□□□□ 0.22
RTN3-207ENST00000536011 TBC1D22AQ8WUA7 517 aa16.44■□□□□ 0.22
RTN3-207ENST00000536011 USP44Q9H0E7 712 aa16.44■□□□□ 0.22
RTN3-207ENST00000536011 VEZTQ9HBM0 779 aa16.44■□□□□ 0.22
RTN3-207ENST00000536011 ANGEL1Q9UNK9 670 aaKnown RBP16.44■□□□□ 0.22
RTN3-207ENST00000536011 TTF2Q9UNY4 1162 aaKnown RBP16.44■□□□□ 0.22
RTN3-207ENST00000536011 JAG2Q9Y219 1238 aa16.44■□□□□ 0.22
RTN3-207ENST00000536011 KIF16BQ96L93 1317 aa16.44■□□□□ 0.22
RTN3-207ENST00000536011 CLRN2A0PK11 232 aa16.43■□□□□ 0.22
RTN3-207ENST00000536011 PDE8BO95263 885 aa16.43■□□□□ 0.22
RTN3-207ENST00000536011 DSG3P32926 999 aa16.43■□□□□ 0.22
RTN3-207ENST00000536011 PRKG1Q13976 671 aa16.43■□□□□ 0.22
RTN3-207ENST00000536011 PUM3Q15397 648 aaKnown RBP16.43■□□□□ 0.22
RTN3-207ENST00000536011 IFIT1P09914 478 aaKnown RBP16.42■□□□□ 0.22
RTN3-207ENST00000536011 UBTFL1P0CB47 393 aaPredicted RBP16.42■□□□□ 0.22
RTN3-207ENST00000536011 PTPN12Q05209 780 aaKnown RBP16.42■□□□□ 0.22
RTN3-207ENST00000536011 LRRC24Q50LG9 513 aa16.42■□□□□ 0.22
RTN3-207ENST00000536011 LDLRAD1Q5T700 205 aa16.42■□□□□ 0.22
RTN3-207ENST00000536011 FBXO33Q7Z6M2 555 aa16.42■□□□□ 0.22
RTN3-207ENST00000536011 TRMT2AQ8IZ69 625 aaKnown RBP16.42■□□□□ 0.22
RTN3-207ENST00000536011 CDCA7LQ96GN5 454 aa16.42■□□□□ 0.22
RTN3-207ENST00000536011 PRMT6Q96LA8 375 aaPredicted RBP16.42■□□□□ 0.22
RTN3-207ENST00000536011 API5Q9BZZ5 524 aaKnown RBP16.42■□□□□ 0.22
RTN3-207ENST00000536011 IREB2P48200 963 aaKnown RBP16.41■□□□□ 0.22
RTN3-207ENST00000536011 TM4SF4P48230 202 aa16.41■□□□□ 0.22
RTN3-207ENST00000536011 MAP3K11Q16584 847 aa16.41■□□□□ 0.22
RTN3-207ENST00000536011 VGLL2Q8N8G2 317 aa16.41■□□□□ 0.22
RTN3-207ENST00000536011 SLC10A4Q96EP9 437 aa16.41■□□□□ 0.22
RTN3-207ENST00000536011 ZBTB48P10074 688 aaPredicted RBP16.4■□□□□ 0.22
RTN3-207ENST00000536011 TNNI2P48788 182 aa16.4■□□□□ 0.22
RTN3-207ENST00000536011 INHBEP58166 350 aa16.4■□□□□ 0.22
RTN3-207ENST00000536011 RASA3Q14644 834 aa16.4■□□□□ 0.22
RTN3-207ENST00000536011 SPDYE2Q495Y8 402 aa16.4■□□□□ 0.22
RTN3-207ENST00000536011 FBXO3Q9UK99 471 aa16.4■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 65.8 ms