RNA–Protein interactions for RNA: ENST00000533492.1

CPSF1-211, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 510 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-211ENST00000533492 F8W031 263 aaPredicted RBP19.37■□□□□ 0.69
CPSF1-211ENST00000533492 NF2P35240 595 aa19.37■□□□□ 0.69
CPSF1-211ENST00000533492 FKBP1AP62942 108 aaKnown RBP19.37■□□□□ 0.69
CPSF1-211ENST00000533492 PRAMEF18Q5VWM3 479 aa19.37■□□□□ 0.69
CPSF1-211ENST00000533492 CERS5Q8N5B7 392 aa19.37■□□□□ 0.69
CPSF1-211ENST00000533492 API5Q9BZZ5 524 aaKnown RBP19.37■□□□□ 0.69
CPSF1-211ENST00000533492 JAG2Q9Y219 1238 aa19.37■□□□□ 0.69
CPSF1-211ENST00000533492 ZNF646O15015 1829 aaPredicted RBP19.37■□□□□ 0.69
CPSF1-211ENST00000533492 GYG1P46976 350 aa19.36■□□□□ 0.69
CPSF1-211ENST00000533492 TTLL12Q14166 644 aaPredicted RBP19.36■□□□□ 0.69
CPSF1-211ENST00000533492 LRRC24Q50LG9 513 aa19.36■□□□□ 0.69
CPSF1-211ENST00000533492 VPS37DQ86XT2 251 aa19.36■□□□□ 0.69
CPSF1-211ENST00000533492 APOBEC3FQ8IUX4 373 aaKnown RBP19.36■□□□□ 0.69
CPSF1-211ENST00000533492 ZIC5Q96T25 663 aa19.36■□□□□ 0.69
CPSF1-211ENST00000533492 TSKSQ9UJT2 592 aa19.36■□□□□ 0.69
CPSF1-211ENST00000533492 TDRD7Q8NHU6 1098 aaKnown RBP19.35■□□□□ 0.69
CPSF1-211ENST00000533492 KLHDC4Q8TBB5 520 aa19.35■□□□□ 0.69
CPSF1-211ENST00000533492 FAM84BQ96KN1 310 aaPredicted RBP19.35■□□□□ 0.69
CPSF1-211ENST00000533492 FAM155AB1AL88 458 aaPredicted RBP19.34■□□□□ 0.69
CPSF1-211ENST00000533492 MYO1BO43795 1136 aa19.34■□□□□ 0.69
CPSF1-211ENST00000533492 UBTFL1P0CB47 393 aaPredicted RBP19.34■□□□□ 0.69
CPSF1-211ENST00000533492 RBM5P52756 815 aaKnown RBP eCLIP19.34■□□□□ 0.69
CPSF1-211ENST00000533492 KIF23Q02241 960 aaPredicted RBP19.34■□□□□ 0.69
CPSF1-211ENST00000533492 CAVIN4Q5BKX8 364 aa19.34■□□□□ 0.69
CPSF1-211ENST00000533492 ZBED3Q96IU2 234 aaPredicted RBP19.34■□□□□ 0.69
CPSF1-211ENST00000533492 HDAC5Q9UQL6 1122 aa19.34■□□□□ 0.69
CPSF1-211ENST00000533492 FAM205AQ6ZU69 1335 aa19.33■□□□□ 0.69
CPSF1-211ENST00000533492 UBE2Q2LH0YL09 131 aa19.33■□□□□ 0.68
CPSF1-211ENST00000533492 FRAT2O75474 233 aaPredicted RBP19.33■□□□□ 0.68
CPSF1-211ENST00000533492 PDE8BO95263 885 aa19.33■□□□□ 0.68
CPSF1-211ENST00000533492 SLC10A3P09131 477 aa19.33■□□□□ 0.68
CPSF1-211ENST00000533492 RARSP54136 660 aaKnown RBP19.33■□□□□ 0.68
CPSF1-211ENST00000533492 CFAP100Q494V2 611 aa19.33■□□□□ 0.68
CPSF1-211ENST00000533492 MFSD14BQ5SR56 506 aa19.33■□□□□ 0.68
CPSF1-211ENST00000533492 MOB2Q70IA6 237 aa19.33■□□□□ 0.68
CPSF1-211ENST00000533492 MTMR14Q8NCE2 650 aa19.33■□□□□ 0.68
CPSF1-211ENST00000533492 DIEXFQ68CQ4 756 aaKnown RBP19.31■□□□□ 0.68
CPSF1-211ENST00000533492 FBXO33Q7Z6M2 555 aa19.31■□□□□ 0.68
CPSF1-211ENST00000533492 DEFB129Q9H1M3 183 aa19.31■□□□□ 0.68
CPSF1-211ENST00000533492 PAPPA2Q9BXP8 1791 aa19.31■□□□□ 0.68
CPSF1-211ENST00000533492 KIF16BQ96L93 1317 aa19.3■□□□□ 0.68
CPSF1-211ENST00000533492 SPDYE2BA6NHP3 402 aa19.3■□□□□ 0.68
CPSF1-211ENST00000533492 EYA2O00167 538 aa19.3■□□□□ 0.68
CPSF1-211ENST00000533492 IFIT1P09914 478 aaKnown RBP19.3■□□□□ 0.68
CPSF1-211ENST00000533492 SPDYE6P0CI01 402 aa19.3■□□□□ 0.68
CPSF1-211ENST00000533492 PRKG1Q13976 671 aa19.3■□□□□ 0.68
CPSF1-211ENST00000533492 ARMC9Q7Z3E5 817 aa19.3■□□□□ 0.68
CPSF1-211ENST00000533492 RASAL3Q86YV0 1011 aa19.3■□□□□ 0.68
CPSF1-211ENST00000533492 MIER1Q8N108 512 aa19.3■□□□□ 0.68
CPSF1-211ENST00000533492 VGLL2Q8N8G2 317 aa19.3■□□□□ 0.68
CPSF1-211ENST00000533492 ARHGAP45Q92619 1136 aa19.3■□□□□ 0.68
CPSF1-211ENST00000533492 PRMT6Q96LA8 375 aaPredicted RBP19.3■□□□□ 0.68
CPSF1-211ENST00000533492 VEZTQ9HBM0 779 aa19.3■□□□□ 0.68
CPSF1-211ENST00000533492 TTF2Q9UNY4 1162 aaKnown RBP19.3■□□□□ 0.68
CPSF1-211ENST00000533492 IQSEC3Q9UPP2 1182 aaPredicted RBP19.3■□□□□ 0.68
CPSF1-211ENST00000533492 PCDHAC2Q9Y5I4 1007 aa19.3■□□□□ 0.68
CPSF1-211ENST00000533492 CLRN2A0PK11 232 aa19.29■□□□□ 0.68
CPSF1-211ENST00000533492 RFX5P48382 616 aaPredicted RBP19.29■□□□□ 0.68
CPSF1-211ENST00000533492 CHAF1AQ13111 956 aaPredicted RBP19.29■□□□□ 0.68
CPSF1-211ENST00000533492 PUM3Q15397 648 aaKnown RBP19.29■□□□□ 0.68
CPSF1-211ENST00000533492 REM2Q8IYK8 340 aaPredicted RBP19.29■□□□□ 0.68
CPSF1-211ENST00000533492 IPO8O15397 1037 aaKnown RBP19.28■□□□□ 0.68
CPSF1-211ENST00000533492 PTPN12Q05209 780 aaKnown RBP19.28■□□□□ 0.68
CPSF1-211ENST00000533492 TBC1D22AQ8WUA7 517 aa19.28■□□□□ 0.68
CPSF1-211ENST00000533492 CSRNP1Q96S65 589 aa19.28■□□□□ 0.68
CPSF1-211ENST00000533492 PPP2R3BQ9Y5P8 575 aa19.28■□□□□ 0.68
CPSF1-211ENST00000533492 LRRFIP2Q9Y608 721 aaKnown RBP19.28■□□□□ 0.68
CPSF1-211ENST00000533492 SLC5A1P13866 664 aa19.27■□□□□ 0.68
CPSF1-211ENST00000533492 BCAMP50895 628 aa19.27■□□□□ 0.68
CPSF1-211ENST00000533492 SIL1Q9H173 461 aa19.27■□□□□ 0.68
CPSF1-211ENST00000533492 SAGE1Q9NXZ1 904 aa19.27■□□□□ 0.68
CPSF1-211ENST00000533492 SERPINA10Q9UK55 444 aa19.27■□□□□ 0.68
CPSF1-211ENST00000533492 ANGEL1Q9UNK9 670 aaKnown RBP19.27■□□□□ 0.68
CPSF1-211ENST00000533492 TRPA1O75762 1119 aa19.26■□□□□ 0.67
CPSF1-211ENST00000533492 HNRNPUQ00839 825 aaKnown RBP eCLIP19.26■□□□□ 0.67
CPSF1-211ENST00000533492 SUPT20HL1Q3ZLR7 823 aa19.26■□□□□ 0.67
CPSF1-211ENST00000533492 LPIN2Q92539 896 aa19.26■□□□□ 0.67
CPSF1-211ENST00000533492 RNF186Q9NXI6 227 aa19.26■□□□□ 0.67
CPSF1-211ENST00000533492 FBXO3Q9UK99 471 aa19.26■□□□□ 0.67
CPSF1-211ENST00000533492 COL1A1P02452 1464 aaPredicted RBP19.26■□□□□ 0.67
CPSF1-211ENST00000533492 CASP8AP2Q9UKL3 1982 aa19.25■□□□□ 0.67
CPSF1-211ENST00000533492 PPP1R12BO60237 982 aaPredicted RBP19.25■□□□□ 0.67
CPSF1-211ENST00000533492 FGFR2P21802 821 aa19.25■□□□□ 0.67
CPSF1-211ENST00000533492 INTS3Q68E01 1043 aaKnown RBP19.25■□□□□ 0.67
CPSF1-211ENST00000533492 FRAT1Q92837 279 aaPredicted RBP19.25■□□□□ 0.67
CPSF1-211ENST00000533492 MEIS3Q99687 375 aa19.25■□□□□ 0.67
CPSF1-211ENST00000533492 CEP126Q9P2H0 1117 aa19.25■□□□□ 0.67
CPSF1-211ENST00000533492 AKAP11Q9UKA4 1901 aa19.25■□□□□ 0.67
CPSF1-211ENST00000533492 ECM29Q5VYK3 1845 aa19.24■□□□□ 0.67
CPSF1-211ENST00000533492 CIAO1O76071 339 aa19.24■□□□□ 0.67
CPSF1-211ENST00000533492 GNAI3P08754 354 aa19.24■□□□□ 0.67
CPSF1-211ENST00000533492 CRKP46108 304 aa19.24■□□□□ 0.67
CPSF1-211ENST00000533492 TNFAIP1Q13829 316 aa19.24■□□□□ 0.67
CPSF1-211ENST00000533492 ATG9AQ7Z3C6 839 aa19.24■□□□□ 0.67
CPSF1-211ENST00000533492 DZIP1LQ8IYY4 767 aaKnown RBP19.24■□□□□ 0.67
CPSF1-211ENST00000533492 TDRD3Q9H7E2 651 aaKnown RBP19.24■□□□□ 0.67
CPSF1-211ENST00000533492 ZNF70Q9UC06 446 aaPredicted RBP19.24■□□□□ 0.67
CPSF1-211ENST00000533492 BCAR3O75815 825 aa19.23■□□□□ 0.67
CPSF1-211ENST00000533492 MKRN3Q13064 507 aaKnown RBP19.23■□□□□ 0.67
CPSF1-211ENST00000533492 RASA3Q14644 834 aa19.23■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms