RNA–Protein interactions for RNA: ENST00000533012.1

TRAPPC4-211, Transcript of trafficking protein particle complex 4, humanhuman

TSL 2

Gene TRAPPC4, Length 817 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAPPC4-211ENST00000533012 SBF1O95248 1867 aa13.76□□□□□ -0.21
TRAPPC4-211ENST00000533012 MYO3BQ8WXR4 1341 aa13.75□□□□□ -0.21
TRAPPC4-211ENST00000533012 GMPSP49915 693 aaPredicted RBP13.75□□□□□ -0.21
TRAPPC4-211ENST00000533012 FKBP1AP62942 108 aaKnown RBP13.75□□□□□ -0.21
TRAPPC4-211ENST00000533012 NUCB1Q02818 461 aa13.75□□□□□ -0.21
TRAPPC4-211ENST00000533012 CHD1LQ86WJ1 897 aa13.75□□□□□ -0.21
TRAPPC4-211ENST00000533012 AGBL3Q8NEM8 1001 aa13.75□□□□□ -0.21
TRAPPC4-211ENST00000533012 WDR66Q8TBY9 1149 aa13.75□□□□□ -0.21
TRAPPC4-211ENST00000533012 ZNF526Q8TF50 670 aaPredicted RBP13.75□□□□□ -0.21
TRAPPC4-211ENST00000533012 TBC1D22AQ8WUA7 517 aa13.75□□□□□ -0.21
TRAPPC4-211ENST00000533012 DPF2Q92785 391 aa13.75□□□□□ -0.21
TRAPPC4-211ENST00000533012 JAG2Q9Y219 1238 aa13.75□□□□□ -0.21
TRAPPC4-211ENST00000533012 ARID4AP29374 1257 aaPredicted RBP13.74□□□□□ -0.21
TRAPPC4-211ENST00000533012 LMOD1P29536 600 aaPredicted RBP13.74□□□□□ -0.21
TRAPPC4-211ENST00000533012 RASGRF1Q13972 1273 aa13.74□□□□□ -0.21
TRAPPC4-211ENST00000533012 MFSD14BQ5SR56 506 aa13.74□□□□□ -0.21
TRAPPC4-211ENST00000533012 C16orf71Q8IYS4 520 aaPredicted RBP13.74□□□□□ -0.21
TRAPPC4-211ENST00000533012 SPATA5Q8NB90 893 aa13.74□□□□□ -0.21
TRAPPC4-211ENST00000533012 GPATCH3Q96I76 525 aa13.74□□□□□ -0.21
TRAPPC4-211ENST00000533012 MXD3Q9BW11 206 aa13.74□□□□□ -0.21
TRAPPC4-211ENST00000533012 RRAGCQ9HB90 399 aa13.74□□□□□ -0.21
TRAPPC4-211ENST00000533012 GPBP1L1Q9HC44 474 aaPredicted RBP13.74□□□□□ -0.21
TRAPPC4-211ENST00000533012 IQCA1LA6NCM1 817 aa13.73□□□□□ -0.21
TRAPPC4-211ENST00000533012 H7C1D1 291 aa13.73□□□□□ -0.21
TRAPPC4-211ENST00000533012 VEGFAP15692 232 aaPredicted RBP13.73□□□□□ -0.21
TRAPPC4-211ENST00000533012 MMP14P50281 582 aa13.73□□□□□ -0.21
TRAPPC4-211ENST00000533012 OGFOD1Q8N543 542 aa13.73□□□□□ -0.21
TRAPPC4-211ENST00000533012 ZGPATQ8N5A5 531 aaKnown RBP13.73□□□□□ -0.21
TRAPPC4-211ENST00000533012 L3MBTL3Q96JM7 780 aaPredicted RBP13.73□□□□□ -0.21
TRAPPC4-211ENST00000533012 LNPKQ9C0E8 428 aa13.73□□□□□ -0.21
TRAPPC4-211ENST00000533012 ECHDC1Q9NTX5 307 aa13.73□□□□□ -0.21
TRAPPC4-211ENST00000533012 PPP4R2Q9NY27 417 aa13.73□□□□□ -0.21
TRAPPC4-211ENST00000533012 HMG20BQ9P0W2 317 aa13.73□□□□□ -0.21
TRAPPC4-211ENST00000533012 CNOT7Q9UIV1 285 aaKnown RBP13.73□□□□□ -0.21
TRAPPC4-211ENST00000533012 CCDC88AQ3V6T2 1871 aa13.72□□□□□ -0.21
TRAPPC4-211ENST00000533012 PDS5AQ29RF7 1337 aaKnown RBP13.72□□□□□ -0.21
TRAPPC4-211ENST00000533012 USP17L8P0C7I0 530 aa13.72□□□□□ -0.21
TRAPPC4-211ENST00000533012 ATP5JP18859 108 aa13.72□□□□□ -0.21
TRAPPC4-211ENST00000533012 MCAMP43121 646 aa13.72□□□□□ -0.21
TRAPPC4-211ENST00000533012 SCNN1DP51172 638 aa13.72□□□□□ -0.21
TRAPPC4-211ENST00000533012 CENPQQ7L2Z9 268 aaPredicted RBP13.72□□□□□ -0.21
TRAPPC4-211ENST00000533012 KIAA0825Q8IV33 1275 aa13.72□□□□□ -0.21
TRAPPC4-211ENST00000533012 PPIL4Q8WUA2 492 aaKnown RBP eCLIP13.72□□□□□ -0.21
TRAPPC4-211ENST00000533012 GMLQ99445 158 aa13.72□□□□□ -0.21
TRAPPC4-211ENST00000533012 SNRKQ9NRH2 765 aa13.72□□□□□ -0.21
TRAPPC4-211ENST00000533012 GPRC5DQ9NZD1 345 aa13.72□□□□□ -0.21
TRAPPC4-211ENST00000533012 HACL1Q9UJ83 578 aa13.72□□□□□ -0.21
TRAPPC4-211ENST00000533012 HDAC9Q9UKV0 1011 aa13.72□□□□□ -0.21
TRAPPC4-211ENST00000533012 SUGT1Q9Y2Z0 365 aa13.72□□□□□ -0.21
TRAPPC4-211ENST00000533012 A0A1B0GUL6 1792 aa13.72□□□□□ -0.21
TRAPPC4-211ENST00000533012 DICER1Q9UPY3 1922 aaKnown RBP13.71□□□□□ -0.21
TRAPPC4-211ENST00000533012 SCARF1Q14162 830 aa13.71□□□□□ -0.21
TRAPPC4-211ENST00000533012 SPTY2D1Q68D10 685 aaPredicted RBP13.71□□□□□ -0.21
TRAPPC4-211ENST00000533012 MICALL2Q8IY33 904 aa13.71□□□□□ -0.21
TRAPPC4-211ENST00000533012 CERS5Q8N5B7 392 aa13.71□□□□□ -0.21
TRAPPC4-211ENST00000533012 CHD4Q14839 1912 aa13.7□□□□□ -0.22
TRAPPC4-211ENST00000533012 TTC41PQ6P2S7 1318 aa13.7□□□□□ -0.22
TRAPPC4-211ENST00000533012 SALL1Q9NSC2 1324 aa13.7□□□□□ -0.22
TRAPPC4-211ENST00000533012 POTECB2RU33 542 aa13.7□□□□□ -0.22
TRAPPC4-211ENST00000533012 F8W031 263 aaPredicted RBP13.7□□□□□ -0.22
TRAPPC4-211ENST00000533012 ERC2O15083 957 aa13.7□□□□□ -0.22
TRAPPC4-211ENST00000533012 MX1P20591 662 aa13.7□□□□□ -0.22
TRAPPC4-211ENST00000533012 EPS15P42566 896 aa13.7□□□□□ -0.22
TRAPPC4-211ENST00000533012 ZAP70P43403 619 aa13.7□□□□□ -0.22
TRAPPC4-211ENST00000533012 PI16Q6UXB8 463 aa13.7□□□□□ -0.22
TRAPPC4-211ENST00000533012 ZNF784Q8NCA9 323 aaPredicted RBP13.7□□□□□ -0.22
TRAPPC4-211ENST00000533012 BOLA2Q9H3K6 86 aa13.7□□□□□ -0.22
TRAPPC4-211ENST00000533012 NMRK2Q9NPI5 230 aa13.7□□□□□ -0.22
TRAPPC4-211ENST00000533012 ADARB2Q9NS39 739 aaKnown RBP13.7□□□□□ -0.22
TRAPPC4-211ENST00000533012 ABCF2Q9UG63 623 aa13.7□□□□□ -0.22
TRAPPC4-211ENST00000533012 TTF2Q9UNY4 1162 aaKnown RBP13.7□□□□□ -0.22
TRAPPC4-211ENST00000533012 LDHBP07195 334 aaKnown RBP13.69□□□□□ -0.22
TRAPPC4-211ENST00000533012 EPHX2P34913 555 aa13.69□□□□□ -0.22
TRAPPC4-211ENST00000533012 ZNF280AP59817 542 aaPredicted RBP13.69□□□□□ -0.22
TRAPPC4-211ENST00000533012 RBM26Q5T8P6 1007 aaKnown RBP13.69□□□□□ -0.22
TRAPPC4-211ENST00000533012 TBC1D9Q6ZT07 1266 aa13.69□□□□□ -0.22
TRAPPC4-211ENST00000533012 ERICH6Q7L0X2 663 aa13.69□□□□□ -0.22
TRAPPC4-211ENST00000533012 OTUD7AQ8TE49 926 aaPredicted RBP13.69□□□□□ -0.22
TRAPPC4-211ENST00000533012 TAF1DQ9H5J8 278 aaPredicted RBP13.69□□□□□ -0.22
TRAPPC4-211ENST00000533012 LRP2BPQ9P2M1 347 aa13.69□□□□□ -0.22
TRAPPC4-211ENST00000533012 TIAM2Q8IVF5 1701 aa13.69□□□□□ -0.22
TRAPPC4-211ENST00000533012 GLRX3O76003 335 aaKnown RBP13.68□□□□□ -0.22
TRAPPC4-211ENST00000533012 CYP2E1P05181 493 aaPredicted RBP13.68□□□□□ -0.22
TRAPPC4-211ENST00000533012 PDE1AP54750 535 aa13.68□□□□□ -0.22
TRAPPC4-211ENST00000533012 TTF1Q15361 905 aaPredicted RBP13.68□□□□□ -0.22
TRAPPC4-211ENST00000533012 USP50Q70EL3 339 aaPredicted RBP13.68□□□□□ -0.22
TRAPPC4-211ENST00000533012 PNMA8AQ86V59 439 aaPredicted RBP13.68□□□□□ -0.22
TRAPPC4-211ENST00000533012 DNAJC2Q99543 621 aaKnown RBP13.68□□□□□ -0.22
TRAPPC4-211ENST00000533012 HAUS7Q99871 368 aa13.68□□□□□ -0.22
TRAPPC4-211ENST00000533012 MRIQ9BWK5 157 aa13.68□□□□□ -0.22
TRAPPC4-211ENST00000533012 STAP2Q9UGK3 403 aa13.68□□□□□ -0.22
TRAPPC4-211ENST00000533012 MAST3O60307 1309 aa13.67□□□□□ -0.22
TRAPPC4-211ENST00000533012 SHTN1A0MZ66 631 aa13.67□□□□□ -0.22
TRAPPC4-211ENST00000533012 IGSF3O75054 1194 aa13.67□□□□□ -0.22
TRAPPC4-211ENST00000533012 PRDX5P30044 214 aa13.67□□□□□ -0.22
TRAPPC4-211ENST00000533012 RBM5P52756 815 aaKnown RBP eCLIP13.67□□□□□ -0.22
TRAPPC4-211ENST00000533012 HDLBPQ00341 1268 aaKnown RBP13.67□□□□□ -0.22
TRAPPC4-211ENST00000533012 GRIK5Q16478 980 aa13.67□□□□□ -0.22
TRAPPC4-211ENST00000533012 TBC1D10BQ4KMP7 808 aaPredicted RBP13.67□□□□□ -0.22
TRAPPC4-211ENST00000533012 TSHZ3Q63HK5 1081 aa13.67□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms