RNA–Protein interactions for RNA: ENST00000532550.1

PHRF1-204, Transcript of PHD and ring finger domains 1, humanhuman

TSL 3

Gene PHRF1, Length 748 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHRF1-204ENST00000532550 CERS5Q8N5B7 392 aa21.53■■□□□ 1.04
PHRF1-204ENST00000532550 TDRD7Q8NHU6 1098 aaKnown RBP21.53■■□□□ 1.04
PHRF1-204ENST00000532550 CDCA5Q96FF9 252 aa21.53■■□□□ 1.04
PHRF1-204ENST00000532550 JAG2Q9Y219 1238 aa21.53■■□□□ 1.04
PHRF1-204ENST00000532550 LRRFIP2Q9Y608 721 aaKnown RBP21.53■■□□□ 1.04
PHRF1-204ENST00000532550 F8W031 263 aaPredicted RBP21.52■■□□□ 1.04
PHRF1-204ENST00000532550 MAP2K2P36507 400 aa21.52■■□□□ 1.04
PHRF1-204ENST00000532550 RFX5P48382 616 aaPredicted RBP21.52■■□□□ 1.04
PHRF1-204ENST00000532550 PTPN12Q05209 780 aaKnown RBP21.52■■□□□ 1.04
PHRF1-204ENST00000532550 DLGAP5Q15398 846 aa21.52■■□□□ 1.04
PHRF1-204ENST00000532550 COL13A1Q5TAT6 717 aaPredicted RBP21.52■■□□□ 1.04
PHRF1-204ENST00000532550 ATF7IPQ6VMQ6 1270 aa21.52■■□□□ 1.04
PHRF1-204ENST00000532550 ZNF646O15015 1829 aaPredicted RBP21.52■■□□□ 1.04
PHRF1-204ENST00000532550 GNAI3P08754 354 aa21.51■■□□□ 1.03
PHRF1-204ENST00000532550 FBXO33Q7Z6M2 555 aa21.51■■□□□ 1.03
PHRF1-204ENST00000532550 VGLL2Q8N8G2 317 aa21.51■■□□□ 1.03
PHRF1-204ENST00000532550 MEIS3Q99687 375 aa21.51■■□□□ 1.03
PHRF1-204ENST00000532550 FAM205AQ6ZU69 1335 aa21.51■■□□□ 1.03
PHRF1-204ENST00000532550 FOXN1O15353 648 aa21.5■■□□□ 1.03
PHRF1-204ENST00000532550 AOC2O75106 756 aa21.5■■□□□ 1.03
PHRF1-204ENST00000532550 FRAT2O75474 233 aaPredicted RBP21.5■■□□□ 1.03
PHRF1-204ENST00000532550 IFIT1P09914 478 aaKnown RBP21.5■■□□□ 1.03
PHRF1-204ENST00000532550 TRIM27P14373 513 aa21.5■■□□□ 1.03
PHRF1-204ENST00000532550 BEGAINQ9BUH8 593 aa21.5■■□□□ 1.03
PHRF1-204ENST00000532550 FBXO3Q9UK99 471 aa21.5■■□□□ 1.03
PHRF1-204ENST00000532550 SCAF8Q9UPN6 1271 aaKnown RBP21.5■■□□□ 1.03
PHRF1-204ENST00000532550 CTCFP49711 727 aaPredicted RBP21.49■■□□□ 1.03
PHRF1-204ENST00000532550 PUM3Q15397 648 aaKnown RBP21.49■■□□□ 1.03
PHRF1-204ENST00000532550 MFSD14BQ5SR56 506 aa21.49■■□□□ 1.03
PHRF1-204ENST00000532550 RGMBQ6NW40 437 aa21.49■■□□□ 1.03
PHRF1-204ENST00000532550 CLUAP1Q96AJ1 413 aa21.49■■□□□ 1.03
PHRF1-204ENST00000532550 ZBED3Q96IU2 234 aaPredicted RBP21.49■■□□□ 1.03
PHRF1-204ENST00000532550 SIL1Q9H173 461 aa21.49■■□□□ 1.03
PHRF1-204ENST00000532550 RBM5P52756 815 aaKnown RBP eCLIP21.48■■□□□ 1.03
PHRF1-204ENST00000532550 IFFO2Q5TF58 517 aa21.48■■□□□ 1.03
PHRF1-204ENST00000532550 ZKSCAN2Q63HK3 967 aa21.48■■□□□ 1.03
PHRF1-204ENST00000532550 APOBEC3FQ8IUX4 373 aaKnown RBP21.48■■□□□ 1.03
PHRF1-204ENST00000532550 MTMR14Q8NCE2 650 aa21.48■■□□□ 1.03
PHRF1-204ENST00000532550 ZBED9Q6R2W3 1325 aa21.48■■□□□ 1.03
PHRF1-204ENST00000532550 MYO1BO43795 1136 aa21.47■■□□□ 1.03
PHRF1-204ENST00000532550 CIAO1O76071 339 aa21.47■■□□□ 1.03
PHRF1-204ENST00000532550 BCAMP50895 628 aa21.47■■□□□ 1.03
PHRF1-204ENST00000532550 FKBP1BP68106 108 aa21.47■■□□□ 1.03
PHRF1-204ENST00000532550 CFAP100Q494V2 611 aa21.47■■□□□ 1.03
PHRF1-204ENST00000532550 PRAMEF18Q5VWM3 479 aa21.47■■□□□ 1.03
PHRF1-204ENST00000532550 ATG9AQ7Z3C6 839 aa21.47■■□□□ 1.03
PHRF1-204ENST00000532550 LPIN2Q92539 896 aa21.47■■□□□ 1.03
PHRF1-204ENST00000532550 CCDC102AQ96A19 550 aa21.47■■□□□ 1.03
PHRF1-204ENST00000532550 CEP126Q9P2H0 1117 aa21.47■■□□□ 1.03
PHRF1-204ENST00000532550 IQSEC3Q9UPP2 1182 aaPredicted RBP21.47■■□□□ 1.03
PHRF1-204ENST00000532550 SLC5A1P13866 664 aa21.46■■□□□ 1.03
PHRF1-204ENST00000532550 FGFR2P21802 821 aa21.46■■□□□ 1.03
PHRF1-204ENST00000532550 NF2P35240 595 aa21.46■■□□□ 1.03
PHRF1-204ENST00000532550 ZNF157P51786 506 aaPredicted RBP21.46■■□□□ 1.03
PHRF1-204ENST00000532550 NOGQ13253 232 aa21.46■■□□□ 1.03
PHRF1-204ENST00000532550 TTF2Q9UNY4 1162 aaKnown RBP21.46■■□□□ 1.03
PHRF1-204ENST00000532550 TNNQ9UQP3 1299 aa21.46■■□□□ 1.03
PHRF1-204ENST00000532550 IL15P40933 162 aaPredicted RBP21.45■■□□□ 1.02
PHRF1-204ENST00000532550 CHAF1AQ13111 956 aaPredicted RBP21.45■■□□□ 1.02
PHRF1-204ENST00000532550 TBC1D22AQ8WUA7 517 aa21.45■■□□□ 1.02
PHRF1-204ENST00000532550 TTLL12Q14166 644 aaPredicted RBP21.44■■□□□ 1.02
PHRF1-204ENST00000532550 PRMT6Q96LA8 375 aaPredicted RBP21.44■■□□□ 1.02
PHRF1-204ENST00000532550 COPRSQ9NQ92 184 aa21.44■■□□□ 1.02
PHRF1-204ENST00000532550 PRDM10Q9NQV6 1147 aa21.44■■□□□ 1.02
PHRF1-204ENST00000532550 PA2G4Q9UQ80 394 aaKnown RBP21.44■■□□□ 1.02
PHRF1-204ENST00000532550 PCDHAC2Q9Y5I4 1007 aa21.44■■□□□ 1.02
PHRF1-204ENST00000532550 SPDYE2BA6NHP3 402 aa21.43■■□□□ 1.02
PHRF1-204ENST00000532550 SRGAP3O43295 1099 aa21.43■■□□□ 1.02
PHRF1-204ENST00000532550 GNAI2P04899 355 aa21.43■■□□□ 1.02
PHRF1-204ENST00000532550 SPDYE6P0CI01 402 aa21.43■■□□□ 1.02
PHRF1-204ENST00000532550 LBX1P52954 281 aa21.43■■□□□ 1.02
PHRF1-204ENST00000532550 TNS4Q8IZW8 715 aa21.43■■□□□ 1.02
PHRF1-204ENST00000532550 SERPINA10Q9UK55 444 aa21.43■■□□□ 1.02
PHRF1-204ENST00000532550 ATP2B3Q16720 1220 aa21.42■■□□□ 1.02
PHRF1-204ENST00000532550 TMEM57Q8N5G2 664 aa21.42■■□□□ 1.02
PHRF1-204ENST00000532550 DEFB129Q9H1M3 183 aa21.42■■□□□ 1.02
PHRF1-204ENST00000532550 CLRN2A0PK11 232 aa21.41■■□□□ 1.02
PHRF1-204ENST00000532550 FTSJ3Q8IY81 847 aaKnown RBP21.41■■□□□ 1.02
PHRF1-204ENST00000532550 VEZTQ9HBM0 779 aa21.41■■□□□ 1.02
PHRF1-204ENST00000532550 FAM155AB1AL88 458 aaPredicted RBP21.4■■□□□ 1.02
PHRF1-204ENST00000532550 UBE2Q2LH0YL09 131 aa21.4■■□□□ 1.02
PHRF1-204ENST00000532550 HSPA8P11142 646 aaKnown RBP21.4■■□□□ 1.02
PHRF1-204ENST00000532550 MTX1Q13505 466 aa21.4■■□□□ 1.02
PHRF1-204ENST00000532550 MOB2Q70IA6 237 aa21.4■■□□□ 1.02
PHRF1-204ENST00000532550 ZIC5Q96T25 663 aa21.4■■□□□ 1.02
PHRF1-204ENST00000532550 GNL3LQ9NVN8 582 aaKnown RBP21.4■■□□□ 1.02
PHRF1-204ENST00000532550 CA12O43570 354 aa21.39■■□□□ 1.01
PHRF1-204ENST00000532550 KIF23Q02241 960 aaPredicted RBP21.39■■□□□ 1.01
PHRF1-204ENST00000532550 ARMC9Q7Z3E5 817 aa21.39■■□□□ 1.01
PHRF1-204ENST00000532550 PPP2R3BQ9Y5P8 575 aa21.39■■□□□ 1.01
PHRF1-204ENST00000532550 THSD7BQ9C0I4 1608 aa21.39■■□□□ 1.01
PHRF1-204ENST00000532550 SLC10A3P09131 477 aa21.38■■□□□ 1.01
PHRF1-204ENST00000532550 CRKP46108 304 aa21.38■■□□□ 1.01
PHRF1-204ENST00000532550 HDLBPQ00341 1268 aaKnown RBP21.38■■□□□ 1.01
PHRF1-204ENST00000532550 PRKG1Q13976 671 aa21.38■■□□□ 1.01
PHRF1-204ENST00000532550 DZIP1LQ8IYY4 767 aaKnown RBP21.38■■□□□ 1.01
PHRF1-204ENST00000532550 WDR66Q8TBY9 1149 aa21.38■■□□□ 1.01
PHRF1-204ENST00000532550 SUGT1Q9Y2Z0 365 aa21.38■■□□□ 1.01
PHRF1-204ENST00000532550 PAPPA2Q9BXP8 1791 aa21.38■■□□□ 1.01
PHRF1-204ENST00000532550 GRIK5Q16478 980 aa21.37■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms