RNA–Protein interactions for RNA: ENST00000530790.5

VPS28-211, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 561 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-211ENST00000530790 AOC2O75106 756 aa16.65■□□□□ 0.26
VPS28-211ENST00000530790 MAP2K2P36507 400 aa16.65■□□□□ 0.26
VPS28-211ENST00000530790 JAG2Q9Y219 1238 aa16.65■□□□□ 0.26
VPS28-211ENST00000530790 PAPPA2Q9BXP8 1791 aa16.64■□□□□ 0.25
VPS28-211ENST00000530790 F8W031 263 aaPredicted RBP16.64■□□□□ 0.25
VPS28-211ENST00000530790 IPO8O15397 1037 aaKnown RBP16.64■□□□□ 0.25
VPS28-211ENST00000530790 PDE8BO95263 885 aa16.64■□□□□ 0.25
VPS28-211ENST00000530790 DLGAP5Q15398 846 aa16.64■□□□□ 0.25
VPS28-211ENST00000530790 CAVIN4Q5BKX8 364 aa16.64■□□□□ 0.25
VPS28-211ENST00000530790 APOBEC3FQ8IUX4 373 aaKnown RBP16.64■□□□□ 0.25
VPS28-211ENST00000530790 VGLL2Q8N8G2 317 aa16.64■□□□□ 0.25
VPS28-211ENST00000530790 FAM84BQ96KN1 310 aaPredicted RBP16.64■□□□□ 0.25
VPS28-211ENST00000530790 ARAP2Q8WZ64 1704 aa16.64■□□□□ 0.25
VPS28-211ENST00000530790 RFX5P48382 616 aaPredicted RBP16.63■□□□□ 0.25
VPS28-211ENST00000530790 NOGQ13253 232 aa16.63■□□□□ 0.25
VPS28-211ENST00000530790 PUM3Q15397 648 aaKnown RBP16.63■□□□□ 0.25
VPS28-211ENST00000530790 MFSD14BQ5SR56 506 aa16.63■□□□□ 0.25
VPS28-211ENST00000530790 INTS3Q68E01 1043 aaKnown RBP16.63■□□□□ 0.25
VPS28-211ENST00000530790 RGMBQ6NW40 437 aa16.63■□□□□ 0.25
VPS28-211ENST00000530790 TNS4Q8IZW8 715 aa16.63■□□□□ 0.25
VPS28-211ENST00000530790 TDRD7Q8NHU6 1098 aaKnown RBP16.63■□□□□ 0.25
VPS28-211ENST00000530790 FRAT1Q92837 279 aaPredicted RBP16.63■□□□□ 0.25
VPS28-211ENST00000530790 ZBED3Q96IU2 234 aaPredicted RBP16.63■□□□□ 0.25
VPS28-211ENST00000530790 MEIS3Q99687 375 aa16.63■□□□□ 0.25
VPS28-211ENST00000530790 SCAF8Q9UPN6 1271 aaKnown RBP16.63■□□□□ 0.25
VPS28-211ENST00000530790 LRRFIP2Q9Y608 721 aaKnown RBP16.63■□□□□ 0.25
VPS28-211ENST00000530790 FAM205AQ6ZU69 1335 aa16.63■□□□□ 0.25
VPS28-211ENST00000530790 COL1A1P02452 1464 aaPredicted RBP16.62■□□□□ 0.25
VPS28-211ENST00000530790 EYA2O00167 538 aa16.62■□□□□ 0.25
VPS28-211ENST00000530790 TRIM27P14373 513 aa16.62■□□□□ 0.25
VPS28-211ENST00000530790 NF2P35240 595 aa16.62■□□□□ 0.25
VPS28-211ENST00000530790 FKBP1BP68106 108 aa16.62■□□□□ 0.25
VPS28-211ENST00000530790 PTPN12Q05209 780 aaKnown RBP16.62■□□□□ 0.25
VPS28-211ENST00000530790 ATF7IPQ6VMQ6 1270 aa16.62■□□□□ 0.25
VPS28-211ENST00000530790 PRDM10Q9NQV6 1147 aa16.62■□□□□ 0.25
VPS28-211ENST00000530790 POLR2AP24928 1970 aaKnown RBP16.62■□□□□ 0.25
VPS28-211ENST00000530790 MYO1BO43795 1136 aa16.61■□□□□ 0.25
VPS28-211ENST00000530790 FRAT2O75474 233 aaPredicted RBP16.61■□□□□ 0.25
VPS28-211ENST00000530790 BCAR3O75815 825 aa16.61■□□□□ 0.25
VPS28-211ENST00000530790 GNAI3P08754 354 aa16.61■□□□□ 0.25
VPS28-211ENST00000530790 IFIT1P09914 478 aaKnown RBP16.61■□□□□ 0.25
VPS28-211ENST00000530790 ZNF157P51786 506 aaPredicted RBP16.61■□□□□ 0.25
VPS28-211ENST00000530790 CFAP100Q494V2 611 aa16.61■□□□□ 0.25
VPS28-211ENST00000530790 MTMR14Q8NCE2 650 aa16.61■□□□□ 0.25
VPS28-211ENST00000530790 SIL1Q9H173 461 aa16.61■□□□□ 0.25
VPS28-211ENST00000530790 FBXO3Q9UK99 471 aa16.61■□□□□ 0.25
VPS28-211ENST00000530790 ZBED9Q6R2W3 1325 aa16.61■□□□□ 0.25
VPS28-211ENST00000530790 SPDYE2BA6NHP3 402 aa16.6■□□□□ 0.25
VPS28-211ENST00000530790 CIAO1O76071 339 aa16.6■□□□□ 0.25
VPS28-211ENST00000530790 SPDYE6P0CI01 402 aa16.6■□□□□ 0.25
VPS28-211ENST00000530790 HSPA8P11142 646 aaKnown RBP16.6■□□□□ 0.25
VPS28-211ENST00000530790 SLC5A1P13866 664 aa16.6■□□□□ 0.25
VPS28-211ENST00000530790 RBM5P52756 815 aaKnown RBP eCLIP16.6■□□□□ 0.25
VPS28-211ENST00000530790 LBX1P52954 281 aa16.6■□□□□ 0.25
VPS28-211ENST00000530790 FBXO33Q7Z6M2 555 aa16.6■□□□□ 0.25
VPS28-211ENST00000530790 CCDC102AQ96A19 550 aa16.6■□□□□ 0.25
VPS28-211ENST00000530790 IQSEC3Q9UPP2 1182 aaPredicted RBP16.6■□□□□ 0.25
VPS28-211ENST00000530790 CA12O43570 354 aa16.59■□□□□ 0.25
VPS28-211ENST00000530790 CHAF1AQ13111 956 aaPredicted RBP16.59■□□□□ 0.25
VPS28-211ENST00000530790 TTLL12Q14166 644 aaPredicted RBP16.59■□□□□ 0.25
VPS28-211ENST00000530790 PRAMEF18Q5VWM3 479 aa16.59■□□□□ 0.25
VPS28-211ENST00000530790 LPIN2Q92539 896 aa16.59■□□□□ 0.25
VPS28-211ENST00000530790 TTF2Q9UNY4 1162 aaKnown RBP16.59■□□□□ 0.25
VPS28-211ENST00000530790 ECM29Q5VYK3 1845 aa16.59■□□□□ 0.25
VPS28-211ENST00000530790 FAM155AB1AL88 458 aaPredicted RBP16.58■□□□□ 0.24
VPS28-211ENST00000530790 SLC10A3P09131 477 aa16.58■□□□□ 0.24
VPS28-211ENST00000530790 FGFR2P21802 821 aa16.58■□□□□ 0.24
VPS28-211ENST00000530790 ATG9AQ7Z3C6 839 aa16.58■□□□□ 0.24
VPS28-211ENST00000530790 TBC1D22AQ8WUA7 517 aa16.58■□□□□ 0.24
VPS28-211ENST00000530790 CLUAP1Q96AJ1 413 aa16.58■□□□□ 0.24
VPS28-211ENST00000530790 SERPINA10Q9UK55 444 aa16.58■□□□□ 0.24
VPS28-211ENST00000530790 PCDHAC2Q9Y5I4 1007 aa16.58■□□□□ 0.24
VPS28-211ENST00000530790 CLRN2A0PK11 232 aa16.57■□□□□ 0.24
VPS28-211ENST00000530790 BCAMP50895 628 aa16.57■□□□□ 0.24
VPS28-211ENST00000530790 ZKSCAN2Q63HK3 967 aa16.57■□□□□ 0.24
VPS28-211ENST00000530790 VEZTQ9HBM0 779 aa16.57■□□□□ 0.24
VPS28-211ENST00000530790 CEP126Q9P2H0 1117 aa16.57■□□□□ 0.24
VPS28-211ENST00000530790 TNNQ9UQP3 1299 aa16.57■□□□□ 0.24
VPS28-211ENST00000530790 PPP2R3BQ9Y5P8 575 aa16.57■□□□□ 0.24
VPS28-211ENST00000530790 IL15P40933 162 aaPredicted RBP16.56■□□□□ 0.24
VPS28-211ENST00000530790 ATP2B3Q16720 1220 aa16.56■□□□□ 0.24
VPS28-211ENST00000530790 MOB2Q70IA6 237 aa16.56■□□□□ 0.24
VPS28-211ENST00000530790 RASAL3Q86YV0 1011 aa16.56■□□□□ 0.24
VPS28-211ENST00000530790 PRMT6Q96LA8 375 aaPredicted RBP16.56■□□□□ 0.24
VPS28-211ENST00000530790 ZIC5Q96T25 663 aa16.56■□□□□ 0.24
VPS28-211ENST00000530790 DEFB129Q9H1M3 183 aa16.56■□□□□ 0.24
VPS28-211ENST00000530790 COPRSQ9NQ92 184 aa16.56■□□□□ 0.24
VPS28-211ENST00000530790 PA2G4Q9UQ80 394 aaKnown RBP16.56■□□□□ 0.24
VPS28-211ENST00000530790 SRGAP3O43295 1099 aa16.55■□□□□ 0.24
VPS28-211ENST00000530790 CRKP46108 304 aa16.55■□□□□ 0.24
VPS28-211ENST00000530790 MTX1Q13505 466 aa16.55■□□□□ 0.24
VPS28-211ENST00000530790 ARMC9Q7Z3E5 817 aa16.55■□□□□ 0.24
VPS28-211ENST00000530790 FTSJ3Q8IY81 847 aaKnown RBP16.55■□□□□ 0.24
VPS28-211ENST00000530790 TSKSQ9UJT2 592 aa16.55■□□□□ 0.24
VPS28-211ENST00000530790 MAST3O60307 1309 aa16.54■□□□□ 0.24
VPS28-211ENST00000530790 AOX1Q06278 1338 aa16.54■□□□□ 0.24
VPS28-211ENST00000530790 UBE2Q2LH0YL09 131 aa16.54■□□□□ 0.24
VPS28-211ENST00000530790 GNAI2P04899 355 aa16.54■□□□□ 0.24
VPS28-211ENST00000530790 KIF23Q02241 960 aaPredicted RBP16.54■□□□□ 0.24
VPS28-211ENST00000530790 TNFAIP1Q13829 316 aa16.54■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms