RNA–Protein interactions for RNA: ENST00000526271.2

CPSF1-201, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 697 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-201ENST00000526271 JAG2Q9Y219 1238 aa18.28■□□□□ 0.52
CPSF1-201ENST00000526271 IL1R1P14778 569 aa18.27■□□□□ 0.52
CPSF1-201ENST00000526271 FKBP5Q13451 457 aaPredicted RBP18.27■□□□□ 0.52
CPSF1-201ENST00000526271 MAP3K11Q16584 847 aa18.27■□□□□ 0.52
CPSF1-201ENST00000526271 MTMR14Q8NCE2 650 aa18.27■□□□□ 0.52
CPSF1-201ENST00000526271 PRMT6Q96LA8 375 aaPredicted RBP18.27■□□□□ 0.52
CPSF1-201ENST00000526271 DEFB129Q9H1M3 183 aa18.27■□□□□ 0.52
CPSF1-201ENST00000526271 ANGEL1Q9UNK9 670 aaKnown RBP18.27■□□□□ 0.52
CPSF1-201ENST00000526271 ARAP2Q8WZ64 1704 aa18.26■□□□□ 0.51
CPSF1-201ENST00000526271 IGF2BP3O00425 579 aaKnown RBP eCLIP18.26■□□□□ 0.51
CPSF1-201ENST00000526271 EXOSC9Q06265 439 aaKnown RBP18.26■□□□□ 0.51
CPSF1-201ENST00000526271 APOBEC3FQ8IUX4 373 aaKnown RBP18.26■□□□□ 0.51
CPSF1-201ENST00000526271 CDAN1Q8IWY9 1227 aa18.26■□□□□ 0.51
CPSF1-201ENST00000526271 MPHOSPH8Q99549 860 aa18.26■□□□□ 0.51
CPSF1-201ENST00000526271 COL1A1P02452 1464 aaPredicted RBP18.26■□□□□ 0.51
CPSF1-201ENST00000526271 KIAA0100Q14667 2235 aaKnown RBP18.25■□□□□ 0.51
CPSF1-201ENST00000526271 CLRN2A0PK11 232 aa18.25■□□□□ 0.51
CPSF1-201ENST00000526271 KAZALD1Q96I82 304 aa18.25■□□□□ 0.51
CPSF1-201ENST00000526271 SPDYE2BA6NHP3 402 aa18.24■□□□□ 0.51
CPSF1-201ENST00000526271 F8W031 263 aaPredicted RBP18.24■□□□□ 0.51
CPSF1-201ENST00000526271 SPDYE6P0CI01 402 aa18.24■□□□□ 0.51
CPSF1-201ENST00000526271 NBPF12Q5TAG4 269 aaPredicted RBP18.24■□□□□ 0.51
CPSF1-201ENST00000526271 CHMP4AQ9BY43 222 aa18.24■□□□□ 0.51
CPSF1-201ENST00000526271 ANKRD18BA2A2Z9 1011 aa18.23■□□□□ 0.51
CPSF1-201ENST00000526271 MMP14P50281 582 aa18.23■□□□□ 0.51
CPSF1-201ENST00000526271 GRIK5Q16478 980 aa18.23■□□□□ 0.51
CPSF1-201ENST00000526271 CFAP100Q494V2 611 aa18.23■□□□□ 0.51
CPSF1-201ENST00000526271 NCBP3Q53F19 620 aaKnown RBP18.23■□□□□ 0.51
CPSF1-201ENST00000526271 ARMC9Q7Z3E5 817 aa18.23■□□□□ 0.51
CPSF1-201ENST00000526271 WNK4Q96J92 1243 aa18.23■□□□□ 0.51
CPSF1-201ENST00000526271 MYH16Q9H6N6 1097 aa18.23■□□□□ 0.51
CPSF1-201ENST00000526271 DLGAP5Q15398 846 aa18.22■□□□□ 0.51
CPSF1-201ENST00000526271 FBXO46Q6PJ61 603 aaPredicted RBP18.22■□□□□ 0.51
CPSF1-201ENST00000526271 LMBR1LQ6UX01 489 aa18.22■□□□□ 0.51
CPSF1-201ENST00000526271 PTPN18Q99952 460 aa18.22■□□□□ 0.51
CPSF1-201ENST00000526271 PUS3Q9BZE2 481 aaKnown RBP18.22■□□□□ 0.51
CPSF1-201ENST00000526271 HDAC9Q9UKV0 1011 aa18.22■□□□□ 0.51
CPSF1-201ENST00000526271 SALL2Q9Y467 1007 aaPredicted RBP18.22■□□□□ 0.51
CPSF1-201ENST00000526271 RBBP6Q7Z6E9 1792 aaKnown RBP18.22■□□□□ 0.51
CPSF1-201ENST00000526271 ZSWIM8A7E2V4 1837 aa18.21■□□□□ 0.51
CPSF1-201ENST00000526271 FKTNO75072 461 aa18.21■□□□□ 0.51
CPSF1-201ENST00000526271 USP2O75604 605 aaPredicted RBP18.21■□□□□ 0.51
CPSF1-201ENST00000526271 NF2P35240 595 aa18.21■□□□□ 0.51
CPSF1-201ENST00000526271 PKN2Q16513 984 aaKnown RBP18.21■□□□□ 0.51
CPSF1-201ENST00000526271 IFNL1Q8IU54 200 aa18.21■□□□□ 0.51
CPSF1-201ENST00000526271 KCNJ4P48050 445 aa18.2■□□□□ 0.5
CPSF1-201ENST00000526271 FKBP1AP62942 108 aaKnown RBP18.2■□□□□ 0.5
CPSF1-201ENST00000526271 SREBF2Q12772 1141 aa18.2■□□□□ 0.5
CPSF1-201ENST00000526271 TEPSINQ96N21 525 aa18.2■□□□□ 0.5
CPSF1-201ENST00000526271 FAM205AQ6ZU69 1335 aa18.2■□□□□ 0.5
CPSF1-201ENST00000526271 IFIT5Q13325 482 aaKnown RBP18.19■□□□□ 0.5
CPSF1-201ENST00000526271 PRPF38BQ5VTL8 546 aaKnown RBP18.19■□□□□ 0.5
CPSF1-201ENST00000526271 WDR63Q8IWG1 891 aa18.19■□□□□ 0.5
CPSF1-201ENST00000526271 TDRD7Q8NHU6 1098 aaKnown RBP18.19■□□□□ 0.5
CPSF1-201ENST00000526271 CNKSR2Q8WXI2 1034 aa18.19■□□□□ 0.5
CPSF1-201ENST00000526271 ZBTB4Q9P1Z0 1013 aaPredicted RBP18.19■□□□□ 0.5
CPSF1-201ENST00000526271 POTEFA5A3E0 1075 aa18.18■□□□□ 0.5
CPSF1-201ENST00000526271 RASA3Q14644 834 aa18.18■□□□□ 0.5
CPSF1-201ENST00000526271 OTOP1Q7RTM1 612 aa18.18■□□□□ 0.5
CPSF1-201ENST00000526271 SUCLG2Q96I99 432 aa18.18■□□□□ 0.5
CPSF1-201ENST00000526271 MANSC4A6NHS7 340 aaPredicted RBP18.17■□□□□ 0.5
CPSF1-201ENST00000526271 GRM8O00222 908 aa18.17■□□□□ 0.5
CPSF1-201ENST00000526271 PLIN1O60240 522 aa18.17■□□□□ 0.5
CPSF1-201ENST00000526271 GYG1P46976 350 aa18.17■□□□□ 0.5
CPSF1-201ENST00000526271 SPDYE2Q495Y8 402 aa18.17■□□□□ 0.5
CPSF1-201ENST00000526271 SLC10A4Q96EP9 437 aa18.17■□□□□ 0.5
CPSF1-201ENST00000526271 FAM84BQ96KN1 310 aaPredicted RBP18.17■□□□□ 0.5
CPSF1-201ENST00000526271 VEZTQ9HBM0 779 aa18.17■□□□□ 0.5
CPSF1-201ENST00000526271 CHMP3Q9Y3E7 222 aa18.17■□□□□ 0.5
CPSF1-201ENST00000526271 TESPA1A2RU30 521 aaPredicted RBP18.16■□□□□ 0.5
CPSF1-201ENST00000526271 ZBTB48P10074 688 aaPredicted RBP18.16■□□□□ 0.5
CPSF1-201ENST00000526271 CRHR2Q13324 411 aa18.16■□□□□ 0.5
CPSF1-201ENST00000526271 PPP1R3FQ6ZSY5 799 aaPredicted RBP18.16■□□□□ 0.5
CPSF1-201ENST00000526271 ZNF804AQ7Z570 1209 aa18.16■□□□□ 0.5
CPSF1-201ENST00000526271 MS4A4AQ96JQ5 239 aa18.16■□□□□ 0.5
CPSF1-201ENST00000526271 ZNF70Q9UC06 446 aaPredicted RBP18.16■□□□□ 0.5
CPSF1-201ENST00000526271 PPP2R3BQ9Y5P8 575 aa18.16■□□□□ 0.5
CPSF1-201ENST00000526271 NBPF7P0C2Y1 421 aaPredicted RBP18.15■□□□□ 0.5
CPSF1-201ENST00000526271 LDHAL6AQ6ZMR3 332 aa18.15■□□□□ 0.5
CPSF1-201ENST00000526271 TDRD3Q9H7E2 651 aaKnown RBP18.15■□□□□ 0.5
CPSF1-201ENST00000526271 MRS2Q9HD23 443 aa18.15■□□□□ 0.5
CPSF1-201ENST00000526271 RIPOR2Q9Y4F9 1068 aa18.15■□□□□ 0.5
CPSF1-201ENST00000526271 TRIM17Q9Y577 477 aa18.15■□□□□ 0.5
CPSF1-201ENST00000526271 ANKRD44Q8N8A2 993 aa18.14■□□□□ 0.49
CPSF1-201ENST00000526271 CD99L2Q8TCZ2 262 aa18.14■□□□□ 0.49
CPSF1-201ENST00000526271 PPP1R12BO60237 982 aaPredicted RBP18.13■□□□□ 0.49
CPSF1-201ENST00000526271 MFSD14BQ5SR56 506 aa18.13■□□□□ 0.49
CPSF1-201ENST00000526271 VGLL2Q8N8G2 317 aa18.13■□□□□ 0.49
CPSF1-201ENST00000526271 TMEM39BQ9GZU3 492 aa18.13■□□□□ 0.49
CPSF1-201ENST00000526271 TTF2Q9UNY4 1162 aaKnown RBP18.13■□□□□ 0.49
CPSF1-201ENST00000526271 UTYO14607 1347 aa18.13■□□□□ 0.49
CPSF1-201ENST00000526271 ALDH1A1P00352 501 aa18.12■□□□□ 0.49
CPSF1-201ENST00000526271 INHBEP58166 350 aa18.12■□□□□ 0.49
CPSF1-201ENST00000526271 UBE4AQ14139 1066 aa18.12■□□□□ 0.49
CPSF1-201ENST00000526271 LRRC24Q50LG9 513 aa18.12■□□□□ 0.49
CPSF1-201ENST00000526271 FBXO33Q7Z6M2 555 aa18.12■□□□□ 0.49
CPSF1-201ENST00000526271 DZIP1LQ8IYY4 767 aaKnown RBP18.12■□□□□ 0.49
CPSF1-201ENST00000526271 BRI3BPQ8WY22 251 aa18.12■□□□□ 0.49
CPSF1-201ENST00000526271 ELP3Q9H9T3 547 aa18.12■□□□□ 0.49
CPSF1-201ENST00000526271 CNNM1Q9NRU3 951 aa18.12■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms