RNA–Protein interactions for RNA: ENST00000525688.5

CD44-220, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 560 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-220ENST00000525688 ARMC5Q96C12 935 aa7.15□□□□□ -1.26
CD44-220ENST00000525688 RHOVQ96L33 236 aa7.15□□□□□ -1.26
CD44-220ENST00000525688 LPIN3Q9BQK8 851 aa7.15□□□□□ -1.26
CD44-220ENST00000525688 TANGO6Q9C0B7 1094 aa7.15□□□□□ -1.26
CD44-220ENST00000525688 MUC3BQ9H195 1237 aa7.15□□□□□ -1.26
CD44-220ENST00000525688 CLEC4MQ9H2X3 399 aaPredicted RBP7.15□□□□□ -1.26
CD44-220ENST00000525688 NAGPAQ9UK23 515 aa7.15□□□□□ -1.26
CD44-220ENST00000525688 SOX13Q9UN79 622 aa7.15□□□□□ -1.26
CD44-220ENST00000525688 FBXO24O75426 580 aa7.14□□□□□ -1.27
CD44-220ENST00000525688 CELA3AP09093 270 aa7.14□□□□□ -1.27
CD44-220ENST00000525688 HSP90B1P14625 803 aaKnown RBP7.14□□□□□ -1.27
CD44-220ENST00000525688 PTPRAP18433 802 aa7.14□□□□□ -1.27
CD44-220ENST00000525688 CDK11BP21127 795 aaKnown RBP7.14□□□□□ -1.27
CD44-220ENST00000525688 EIF4A3P38919 411 aaKnown RBP7.14□□□□□ -1.27
CD44-220ENST00000525688 LIG3P49916 1009 aa7.14□□□□□ -1.27
CD44-220ENST00000525688 RPS26P62854 115 aaKnown RBP7.14□□□□□ -1.27
CD44-220ENST00000525688 ARID5AQ03989 594 aa7.14□□□□□ -1.27
CD44-220ENST00000525688 PAK2Q13177 524 aa7.14□□□□□ -1.27
CD44-220ENST00000525688 ELMSAN1Q6PJG2 1045 aa7.14□□□□□ -1.27
CD44-220ENST00000525688 VN1R5Q7Z5H4 357 aa7.14□□□□□ -1.27
CD44-220ENST00000525688 VPS37DQ86XT2 251 aa7.14□□□□□ -1.27
CD44-220ENST00000525688 MICALL1Q8N3F8 863 aa7.14□□□□□ -1.27
CD44-220ENST00000525688 SPATA32Q96LK8 384 aa7.14□□□□□ -1.27
CD44-220ENST00000525688 SPON2Q9BUD6 331 aa7.14□□□□□ -1.27
CD44-220ENST00000525688 TMEM39AQ9NV64 488 aa7.14□□□□□ -1.27
CD44-220ENST00000525688 ADAMTS1Q9UHI8 967 aa7.14□□□□□ -1.27
CD44-220ENST00000525688 CDK11AQ9UQ88 783 aaPredicted RBP7.14□□□□□ -1.27
CD44-220ENST00000525688 NEURL1BA8MQ27 555 aa7.13□□□□□ -1.27
CD44-220ENST00000525688 B3GALT4O96024 378 aa7.13□□□□□ -1.27
CD44-220ENST00000525688 GBP2P32456 591 aaPredicted RBP7.13□□□□□ -1.27
CD44-220ENST00000525688 ADAMTSL4Q6UY14 1074 aa7.13□□□□□ -1.27
CD44-220ENST00000525688 AGMOQ6ZNB7 445 aa7.13□□□□□ -1.27
CD44-220ENST00000525688 KIAA0825Q8IV33 1275 aa7.13□□□□□ -1.27
CD44-220ENST00000525688 GOLGA6L1Q8N7Z2 621 aa7.13□□□□□ -1.27
CD44-220ENST00000525688 GPRASP2Q96D09 838 aa7.13□□□□□ -1.27
CD44-220ENST00000525688 SMG9Q9H0W8 520 aaKnown RBP7.13□□□□□ -1.27
CD44-220ENST00000525688 GGA1Q9UJY5 639 aa7.13□□□□□ -1.27
CD44-220ENST00000525688 GDF2Q9UK05 429 aaPredicted RBP7.13□□□□□ -1.27
CD44-220ENST00000525688 IGF1RP08069 1367 aa7.12□□□□□ -1.27
CD44-220ENST00000525688 MINDY4BA8MYZ0 360 aa7.12□□□□□ -1.27
CD44-220ENST00000525688 GREM1O60565 184 aa7.12□□□□□ -1.27
CD44-220ENST00000525688 ATF4P18848 351 aaPredicted RBP7.12□□□□□ -1.27
CD44-220ENST00000525688 ATP2B1P20020 1258 aa7.12□□□□□ -1.27
CD44-220ENST00000525688 GARTP22102 1010 aa7.12□□□□□ -1.27
CD44-220ENST00000525688 LMNB2Q03252 620 aa7.12□□□□□ -1.27
CD44-220ENST00000525688 PPP2R3AQ06190 1150 aa7.12□□□□□ -1.27
CD44-220ENST00000525688 SLCO4C1Q6ZQN7 724 aa7.12□□□□□ -1.27
CD44-220ENST00000525688 NT5C1AQ9BXI3 368 aa7.12□□□□□ -1.27
CD44-220ENST00000525688 PAGE1O75459 146 aa7.11□□□□□ -1.27
CD44-220ENST00000525688 ALAS2P22557 587 aa7.11□□□□□ -1.27
CD44-220ENST00000525688 DNAJA1P31689 397 aaKnown RBP7.11□□□□□ -1.27
CD44-220ENST00000525688 SRSF11Q05519 484 aaKnown RBP7.11□□□□□ -1.27
CD44-220ENST00000525688 PCDH1Q08174 1060 aa7.11□□□□□ -1.27
CD44-220ENST00000525688 CAMK2GQ13555 558 aaPredicted RBP7.11□□□□□ -1.27
CD44-220ENST00000525688 ZNF423Q2M1K9 1284 aa7.11□□□□□ -1.27
CD44-220ENST00000525688 TTBK2Q6IQ55 1244 aa7.11□□□□□ -1.27
CD44-220ENST00000525688 PSAPL1Q6NUJ1 521 aa7.11□□□□□ -1.27
CD44-220ENST00000525688 ZNF296Q8WUU4 475 aaPredicted RBP7.11□□□□□ -1.27
CD44-220ENST00000525688 SEC16BQ96JE7 1060 aa7.11□□□□□ -1.27
CD44-220ENST00000525688 COL25A1Q9BXS0 654 aaPredicted RBP7.11□□□□□ -1.27
CD44-220ENST00000525688 GPN3Q9UHW5 284 aaPredicted RBP7.11□□□□□ -1.27
CD44-220ENST00000525688 TRIM33Q9UPN9 1127 aa7.11□□□□□ -1.27
CD44-220ENST00000525688 TLR6Q9Y2C9 796 aa7.11□□□□□ -1.27
CD44-220ENST00000525688 PF4P02776 101 aa7.1□□□□□ -1.27
CD44-220ENST00000525688 FGRP09769 529 aa7.1□□□□□ -1.27
CD44-220ENST00000525688 TFE3P19532 575 aaPredicted RBP7.1□□□□□ -1.27
CD44-220ENST00000525688 GRIK5Q16478 980 aa7.1□□□□□ -1.27
CD44-220ENST00000525688 MAP3K11Q16584 847 aa7.1□□□□□ -1.27
CD44-220ENST00000525688 RNFT1Q5M7Z0 435 aa7.1□□□□□ -1.27
CD44-220ENST00000525688 PCNX4Q63HM2 1172 aa7.1□□□□□ -1.27
CD44-220ENST00000525688 FBXL19Q6PCT2 694 aa7.1□□□□□ -1.27
CD44-220ENST00000525688 C20orf204Q6ZNR8 217 aa7.1□□□□□ -1.27
CD44-220ENST00000525688 CCDC84Q86UT8 332 aaPredicted RBP7.1□□□□□ -1.27
CD44-220ENST00000525688 MCF2L2Q86YR7 1114 aa7.1□□□□□ -1.27
CD44-220ENST00000525688 EAF1Q96JC9 268 aaPredicted RBP7.1□□□□□ -1.27
CD44-220ENST00000525688 PPP1R1BQ9UD71 204 aaPredicted RBP7.1□□□□□ -1.27
CD44-220ENST00000525688 STARD13Q9Y3M8 1113 aa7.1□□□□□ -1.27
CD44-220ENST00000525688 SAMM50Q9Y512 469 aa7.1□□□□□ -1.27
CD44-220ENST00000525688 SUPT16HQ9Y5B9 1047 aaKnown RBP7.1□□□□□ -1.27
CD44-220ENST00000525688 F6X3S4 739 aa7.09□□□□□ -1.27
CD44-220ENST00000525688 TERTO14746 1132 aaKnown RBP7.09□□□□□ -1.27
CD44-220ENST00000525688 EIF4EBP3O60516 100 aaPredicted RBP7.09□□□□□ -1.27
CD44-220ENST00000525688 RGS9O75916 674 aaPredicted RBP7.09□□□□□ -1.27
CD44-220ENST00000525688 ESRRAP11474 423 aaPredicted RBP7.09□□□□□ -1.27
CD44-220ENST00000525688 EPXP11678 715 aa7.09□□□□□ -1.27
CD44-220ENST00000525688 BMP6P22004 513 aa7.09□□□□□ -1.27
CD44-220ENST00000525688 NME2P22392 152 aa7.09□□□□□ -1.27
CD44-220ENST00000525688 CDC27P30260 824 aa7.09□□□□□ -1.27
CD44-220ENST00000525688 RBL2Q08999 1139 aa7.09□□□□□ -1.27
CD44-220ENST00000525688 NFX1Q12986 1120 aaKnown RBP7.09□□□□□ -1.27
CD44-220ENST00000525688 SCARA3Q6AZY7 606 aa7.09□□□□□ -1.27
CD44-220ENST00000525688 KANK3Q6NY19 840 aa7.09□□□□□ -1.27
CD44-220ENST00000525688 TRIM42Q8IWZ5 723 aa7.09□□□□□ -1.27
CD44-220ENST00000525688 PUS7Q96PZ0 661 aaKnown RBP7.09□□□□□ -1.27
CD44-220ENST00000525688 SOX17Q9H6I2 414 aaPredicted RBP7.09□□□□□ -1.27
CD44-220ENST00000525688 CYP8B1Q9UNU6 501 aa7.09□□□□□ -1.27
CD44-220ENST00000525688 ROBO2Q9HCK4 1378 aa7.08□□□□□ -1.28
CD44-220ENST00000525688 FAM177BA6PVY3 158 aa7.08□□□□□ -1.28
CD44-220ENST00000525688 COL9A2Q14055 689 aaPredicted RBP7.08□□□□□ -1.28
CD44-220ENST00000525688 LACRTQ9GZZ8 138 aa7.08□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms