RNA–Protein interactions for RNA: ENST00000520755.5

LSM1-203, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best) BASIC

Gene LSM1, Length 975 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-203ENST00000520755 GORABQ5T7V8 394 aa18.78■□□□□ 0.6
LSM1-203ENST00000520755 GPC2Q8N158 579 aa18.78■□□□□ 0.6
LSM1-203ENST00000520755 USP17L3A6NCW0 530 aa18.77■□□□□ 0.6
LSM1-203ENST00000520755 USP17L4A6NCW7 530 aa18.77■□□□□ 0.6
LSM1-203ENST00000520755 FRAT2O75474 233 aaPredicted RBP18.77■□□□□ 0.6
LSM1-203ENST00000520755 PHKA1P46020 1223 aa18.77■□□□□ 0.6
LSM1-203ENST00000520755 GTF2IP78347 998 aa18.77■□□□□ 0.6
LSM1-203ENST00000520755 TSHZ3Q63HK5 1081 aa18.77■□□□□ 0.6
LSM1-203ENST00000520755 USP17L1Q7RTZ2 530 aa18.77■□□□□ 0.6
LSM1-203ENST00000520755 TDRD7Q8NHU6 1098 aaKnown RBP18.77■□□□□ 0.6
LSM1-203ENST00000520755 JAG2Q9Y219 1238 aa18.77■□□□□ 0.6
LSM1-203ENST00000520755 MAST2Q6P0Q8 1798 aa18.76■□□□□ 0.59
LSM1-203ENST00000520755 IFIT2P09913 472 aaKnown RBP18.76■□□□□ 0.59
LSM1-203ENST00000520755 CCDC102BQ68D86 513 aa18.76■□□□□ 0.59
LSM1-203ENST00000520755 TTLL5Q6EMB2 1281 aa18.76■□□□□ 0.59
LSM1-203ENST00000520755 PLEKHM2Q8IWE5 1019 aa18.76■□□□□ 0.59
LSM1-203ENST00000520755 GNL3LQ9NVN8 582 aaKnown RBP18.76■□□□□ 0.59
LSM1-203ENST00000520755 ZBTB12Q9Y330 459 aaPredicted RBP18.76■□□□□ 0.59
LSM1-203ENST00000520755 SCN4AP35499 1836 aa18.76■□□□□ 0.59
LSM1-203ENST00000520755 MX1P20591 662 aa18.75■□□□□ 0.59
LSM1-203ENST00000520755 GMPSP49915 693 aaPredicted RBP18.75■□□□□ 0.59
LSM1-203ENST00000520755 CHAF1AQ13111 956 aaPredicted RBP18.75■□□□□ 0.59
LSM1-203ENST00000520755 MXD3Q9BW11 206 aa18.75■□□□□ 0.59
LSM1-203ENST00000520755 ZBTB47Q9UFB7 747 aaPredicted RBP18.75■□□□□ 0.59
LSM1-203ENST00000520755 VIL1P09327 827 aaKnown RBP18.74■□□□□ 0.59
LSM1-203ENST00000520755 DACT2Q5SW24 774 aa18.74■□□□□ 0.59
LSM1-203ENST00000520755 STRIP1Q5VSL9 837 aa18.74■□□□□ 0.59
LSM1-203ENST00000520755 RSBN1LQ6PCB5 846 aaPredicted RBP18.74■□□□□ 0.59
LSM1-203ENST00000520755 GPBP1L1Q9HC44 474 aaPredicted RBP18.74■□□□□ 0.59
LSM1-203ENST00000520755 STAP2Q9UGK3 403 aa18.74■□□□□ 0.59
LSM1-203ENST00000520755 PDE1AP54750 535 aa18.73■□□□□ 0.59
LSM1-203ENST00000520755 TTC39AQ5SRH9 613 aa18.73■□□□□ 0.59
LSM1-203ENST00000520755 ZNF784Q8NCA9 323 aaPredicted RBP18.73■□□□□ 0.59
LSM1-203ENST00000520755 PI4K2BQ8TCG2 481 aa18.73■□□□□ 0.59
LSM1-203ENST00000520755 RRAGCQ9HB90 399 aa18.73■□□□□ 0.59
LSM1-203ENST00000520755 NMRK2Q9NPI5 230 aa18.73■□□□□ 0.59
LSM1-203ENST00000520755 LMOD1P29536 600 aaPredicted RBP18.72■□□□□ 0.59
LSM1-203ENST00000520755 RGS3P49796 1198 aa18.72■□□□□ 0.59
LSM1-203ENST00000520755 SCNN1DP51172 638 aa18.72■□□□□ 0.59
LSM1-203ENST00000520755 CCDC158Q5M9N0 1113 aa18.72■□□□□ 0.59
LSM1-203ENST00000520755 L3MBTL3Q96JM7 780 aaPredicted RBP18.72■□□□□ 0.59
LSM1-203ENST00000520755 OSBPL3Q9H4L5 887 aa18.72■□□□□ 0.59
LSM1-203ENST00000520755 ECHDC1Q9NTX5 307 aa18.72■□□□□ 0.59
LSM1-203ENST00000520755 AOX1Q06278 1338 aa18.72■□□□□ 0.59
LSM1-203ENST00000520755 TTC41PQ6P2S7 1318 aa18.72■□□□□ 0.59
LSM1-203ENST00000520755 FAM205AQ6ZU69 1335 aa18.72■□□□□ 0.59
LSM1-203ENST00000520755 ARID4AP29374 1257 aaPredicted RBP18.71■□□□□ 0.59
LSM1-203ENST00000520755 SCARF1Q14162 830 aa18.71■□□□□ 0.59
LSM1-203ENST00000520755 DENND2AQ9ULE3 1009 aa18.71■□□□□ 0.59
LSM1-203ENST00000520755 ADAMTSL1Q8N6G6 1762 aa18.7■□□□□ 0.58
LSM1-203ENST00000520755 SEMA3EO15041 775 aa18.7■□□□□ 0.58
LSM1-203ENST00000520755 UQCRFS1P1P0C7P4 283 aa18.7■□□□□ 0.58
LSM1-203ENST00000520755 RPS12P25398 132 aaKnown RBP18.7■□□□□ 0.58
LSM1-203ENST00000520755 RASGRF1Q13972 1273 aa18.7■□□□□ 0.58
LSM1-203ENST00000520755 MFSD14BQ5SR56 506 aa18.7■□□□□ 0.58
LSM1-203ENST00000520755 CERS5Q8N5B7 392 aa18.7■□□□□ 0.58
LSM1-203ENST00000520755 AGBL3Q8NEM8 1001 aa18.7■□□□□ 0.58
LSM1-203ENST00000520755 GPRC5DQ9NZD1 345 aa18.7■□□□□ 0.58
LSM1-203ENST00000520755 HACL1Q9UJ83 578 aa18.7■□□□□ 0.58
LSM1-203ENST00000520755 MYO3BQ8WXR4 1341 aa18.7■□□□□ 0.58
LSM1-203ENST00000520755 SHTN1A0MZ66 631 aa18.69■□□□□ 0.58
LSM1-203ENST00000520755 IQCA1LA6NCM1 817 aa18.69■□□□□ 0.58
LSM1-203ENST00000520755 POTECB2RU33 542 aa18.69■□□□□ 0.58
LSM1-203ENST00000520755 VEGFAP15692 232 aaPredicted RBP18.69■□□□□ 0.58
LSM1-203ENST00000520755 ATP5JP18859 108 aa18.69■□□□□ 0.58
LSM1-203ENST00000520755 MCAMP43121 646 aa18.69■□□□□ 0.58
LSM1-203ENST00000520755 PI16Q6UXB8 463 aa18.69■□□□□ 0.58
LSM1-203ENST00000520755 KIAA0825Q8IV33 1275 aa18.69■□□□□ 0.58
LSM1-203ENST00000520755 MICALL2Q8IY33 904 aa18.69■□□□□ 0.58
LSM1-203ENST00000520755 DPF2Q92785 391 aa18.69■□□□□ 0.58
LSM1-203ENST00000520755 CNOT7Q9UIV1 285 aaKnown RBP18.69■□□□□ 0.58
LSM1-203ENST00000520755 F8W031 263 aaPredicted RBP18.68■□□□□ 0.58
LSM1-203ENST00000520755 GSPT1P15170 499 aaKnown RBP18.68■□□□□ 0.58
LSM1-203ENST00000520755 EPS15P42566 896 aa18.68■□□□□ 0.58
LSM1-203ENST00000520755 FKBP1AP62942 108 aaKnown RBP18.68■□□□□ 0.58
LSM1-203ENST00000520755 SPATA5Q8NB90 893 aa18.68■□□□□ 0.58
LSM1-203ENST00000520755 WDR66Q8TBY9 1149 aa18.68■□□□□ 0.58
LSM1-203ENST00000520755 TBC1D22AQ8WUA7 517 aa18.68■□□□□ 0.58
LSM1-203ENST00000520755 GPATCH3Q96I76 525 aa18.68■□□□□ 0.58
LSM1-203ENST00000520755 ZNF512BQ96KM6 892 aaPredicted RBP18.68■□□□□ 0.58
LSM1-203ENST00000520755 GMLQ99445 158 aa18.68■□□□□ 0.58
LSM1-203ENST00000520755 HMG20BQ9P0W2 317 aa18.68■□□□□ 0.58
LSM1-203ENST00000520755 NDUFB9Q9Y6M9 179 aa18.68■□□□□ 0.58
LSM1-203ENST00000520755 ZBTB22O15209 634 aa18.67■□□□□ 0.58
LSM1-203ENST00000520755 USP17L8P0C7I0 530 aa18.67■□□□□ 0.58
LSM1-203ENST00000520755 TTC22Q5TAA0 569 aa18.67■□□□□ 0.58
LSM1-203ENST00000520755 PPIL4Q8WUA2 492 aaKnown RBP eCLIP18.67■□□□□ 0.58
LSM1-203ENST00000520755 SNRKQ9NRH2 765 aa18.67■□□□□ 0.58
LSM1-203ENST00000520755 H7C1D1 291 aa18.66■□□□□ 0.58
LSM1-203ENST00000520755 GLRX3O76003 335 aaKnown RBP18.66■□□□□ 0.58
LSM1-203ENST00000520755 EPHX2P34913 555 aa18.66■□□□□ 0.58
LSM1-203ENST00000520755 BOLA2Q9H3K6 86 aa18.66■□□□□ 0.58
LSM1-203ENST00000520755 TAF1DQ9H5J8 278 aaPredicted RBP18.66■□□□□ 0.58
LSM1-203ENST00000520755 PDS5AQ29RF7 1337 aaKnown RBP18.66■□□□□ 0.58
LSM1-203ENST00000520755 MYH2Q9UKX2 1941 aa18.65■□□□□ 0.58
LSM1-203ENST00000520755 GRIK5Q16478 980 aa18.65■□□□□ 0.58
LSM1-203ENST00000520755 RBM26Q5T8P6 1007 aaKnown RBP18.65■□□□□ 0.58
LSM1-203ENST00000520755 SAMD7Q7Z3H4 446 aa18.65■□□□□ 0.58
LSM1-203ENST00000520755 OGFOD1Q8N543 542 aa18.65■□□□□ 0.58
LSM1-203ENST00000520755 EDC3Q96F86 508 aaKnown RBP18.65■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms