RNA–Protein interactions for RNA: ENST00000520561.1

CSMD1-208, Transcript of CUB and Sushi multiple domains 1, human

TSL 4

Gene CSMD1, Length 527 nt, Biotype processed transcript, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CSMD1-208	ENST00000520561	WWC3	Q9ULE0	1092 aa		10.84	□□□□□ -0.67
CSMD1-208	ENST00000520561	IQSEC3	Q9UPP2	1182 aa	Predicted RBP	10.84	□□□□□ -0.67
CSMD1-208	ENST00000520561	BCS1L	Q9Y276	419 aa		10.84	□□□□□ -0.67
CSMD1-208	ENST00000520561	AKAP11	Q9UKA4	1901 aa		10.84	□□□□□ -0.67
CSMD1-208	ENST00000520561	MAST2	Q6P0Q8	1798 aa		10.83	□□□□□ -0.68
CSMD1-208	ENST00000520561	CHML	P26374	656 aa		10.83	□□□□□ -0.68
CSMD1-208	ENST00000520561	CHAF1A	Q13111	956 aa	Predicted RBP	10.83	□□□□□ -0.68
CSMD1-208	ENST00000520561	ZSCAN25	Q6NSZ9	544 aa		10.83	□□□□□ -0.68
CSMD1-208	ENST00000520561	PI16	Q6UXB8	463 aa		10.83	□□□□□ -0.68
CSMD1-208	ENST00000520561	TICAM2	Q86XR7	235 aa		10.83	□□□□□ -0.68
CSMD1-208	ENST00000520561	PSMD1	Q99460	953 aa		10.83	□□□□□ -0.68
CSMD1-208	ENST00000520561	CD209	Q9NNX6	404 aa		10.83	□□□□□ -0.68
CSMD1-208	ENST00000520561	DOCK2	Q92608	1830 aa		10.83	□□□□□ -0.68
CSMD1-208	ENST00000520561	ARFGEF1	Q9Y6D6	1849 aa		10.83	□□□□□ -0.68
CSMD1-208	ENST00000520561	RAD50	Q92878	1312 aa		10.83	□□□□□ -0.68
CSMD1-208	ENST00000520561	PPIP5K2	O43314	1243 aa		10.82	□□□□□ -0.68
CSMD1-208	ENST00000520561	IDH1	O75874	414 aa	Known RBP	10.82	□□□□□ -0.68
CSMD1-208	ENST00000520561	CYP2E1	P05181	493 aa	Predicted RBP	10.82	□□□□□ -0.68
CSMD1-208	ENST00000520561	ZFY	P08048	801 aa	Predicted RBP	10.82	□□□□□ -0.68
CSMD1-208	ENST00000520561	IL1R1	P14778	569 aa		10.82	□□□□□ -0.68
CSMD1-208	ENST00000520561	ZGPAT	Q8N5A5	531 aa	Known RBP	10.82	□□□□□ -0.68
CSMD1-208	ENST00000520561	TDRD7	Q8NHU6	1098 aa	Known RBP	10.82	□□□□□ -0.68
CSMD1-208	ENST00000520561	ANTXR1	Q9H6X2	564 aa		10.82	□□□□□ -0.68
CSMD1-208	ENST00000520561	MYH7	P12883	1935 aa		10.82	□□□□□ -0.68
CSMD1-208	ENST00000520561	REC8	O95072	547 aa		10.81	□□□□□ -0.68
CSMD1-208	ENST00000520561	MFAP1	P55081	439 aa	Known RBP	10.81	□□□□□ -0.68
CSMD1-208	ENST00000520561	KIAA2012	Q0VF49	1180 aa		10.81	□□□□□ -0.68
CSMD1-208	ENST00000520561	MAP3K12	Q12852	859 aa		10.81	□□□□□ -0.68
CSMD1-208	ENST00000520561	AOC3	Q16853	763 aa		10.81	□□□□□ -0.68
CSMD1-208	ENST00000520561	WDR66	Q8TBY9	1149 aa		10.81	□□□□□ -0.68
CSMD1-208	ENST00000520561	ESYT1	Q9BSJ8	1104 aa		10.81	□□□□□ -0.68
CSMD1-208	ENST00000520561	VPS33B	Q9H267	617 aa		10.81	□□□□□ -0.68
CSMD1-208	ENST00000520561	TAOK3	Q9H2K8	898 aa		10.81	□□□□□ -0.68
CSMD1-208	ENST00000520561	PIH1D3	Q9NQM4	214 aa	Known RBP	10.81	□□□□□ -0.68
CSMD1-208	ENST00000520561	LRP2BP	Q9P2M1	347 aa		10.81	□□□□□ -0.68
CSMD1-208	ENST00000520561	ABCF2	Q9UG63	623 aa		10.81	□□□□□ -0.68
CSMD1-208	ENST00000520561	SALL1	Q9NSC2	1324 aa		10.81	□□□□□ -0.68
CSMD1-208	ENST00000520561	RNF113A	O15541	343 aa	Known RBP	10.8	□□□□□ -0.68
CSMD1-208	ENST00000520561	ECE2	O60344	883 aa		10.8	□□□□□ -0.68
CSMD1-208	ENST00000520561	IGSF3	O75054	1194 aa		10.8	□□□□□ -0.68
CSMD1-208	ENST00000520561	NMI	Q13287	307 aa	Predicted RBP	10.8	□□□□□ -0.68
CSMD1-208	ENST00000520561	DOK7	Q18PE1	504 aa		10.8	□□□□□ -0.68
CSMD1-208	ENST00000520561	SPTY2D1	Q68D10	685 aa	Predicted RBP	10.8	□□□□□ -0.68
CSMD1-208	ENST00000520561	CWC27	Q6UX04	472 aa	Known RBP	10.8	□□□□□ -0.68
CSMD1-208	ENST00000520561	TBC1D22A	Q8WUA7	517 aa		10.8	□□□□□ -0.68
CSMD1-208	ENST00000520561	FBXW7	Q969H0	707 aa		10.8	□□□□□ -0.68
CSMD1-208	ENST00000520561	DBNDD1	Q9H9R9	158 aa		10.8	□□□□□ -0.68
CSMD1-208	ENST00000520561	RAI14	Q9P0K7	980 aa		10.8	□□□□□ -0.68
CSMD1-208	ENST00000520561	FER1L6	Q2WGJ9	1857 aa		10.8	□□□□□ -0.68
CSMD1-208	ENST00000520561	LTBP3	Q9NS15	1303 aa		10.8	□□□□□ -0.68
CSMD1-208	ENST00000520561	PDE6A	P16499	860 aa		10.79	□□□□□ -0.68
CSMD1-208	ENST00000520561	IARS	P41252	1262 aa	Known RBP	10.79	□□□□□ -0.68
CSMD1-208	ENST00000520561	ERICH6	Q7L0X2	663 aa		10.79	□□□□□ -0.68
CSMD1-208	ENST00000520561	PODN	Q7Z5L7	613 aa		10.79	□□□□□ -0.68
CSMD1-208	ENST00000520561	DZIP1	Q86YF9	867 aa	Known RBP	10.79	□□□□□ -0.68
CSMD1-208	ENST00000520561	LARGE2	Q8N3Y3	721 aa		10.79	□□□□□ -0.68
CSMD1-208	ENST00000520561	APPBP2	Q92624	585 aa		10.79	□□□□□ -0.68
CSMD1-208	ENST00000520561	SYT17	Q9BSW7	474 aa		10.79	□□□□□ -0.68
CSMD1-208	ENST00000520561	ZNF277	Q9NRM2	450 aa	Predicted RBP	10.79	□□□□□ -0.68
CSMD1-208	ENST00000520561	JAG2	Q9Y219	1238 aa		10.79	□□□□□ -0.68
CSMD1-208	ENST00000520561	FAM205A	Q6ZU69	1335 aa		10.79	□□□□□ -0.68
CSMD1-208	ENST00000520561		A0A0D9SFI3	127 aa		10.78	□□□□□ -0.68
CSMD1-208	ENST00000520561	NFKBIE	O00221	500 aa		10.78	□□□□□ -0.68
CSMD1-208	ENST00000520561	SGSM2	O43147	1006 aa		10.78	□□□□□ -0.68
CSMD1-208	ENST00000520561	LDHB	P07195	334 aa	Known RBP	10.78	□□□□□ -0.68
CSMD1-208	ENST00000520561	ADD2	P35612	726 aa		10.78	□□□□□ -0.68
CSMD1-208	ENST00000520561	GTF2I	P78347	998 aa		10.78	□□□□□ -0.68
CSMD1-208	ENST00000520561	UBE3C	Q15386	1083 aa		10.78	□□□□□ -0.68
CSMD1-208	ENST00000520561	MCMDC2	Q4G0Z9	681 aa		10.78	□□□□□ -0.68
CSMD1-208	ENST00000520561	ZMYM1	Q5SVZ6	1142 aa		10.78	□□□□□ -0.68
CSMD1-208	ENST00000520561	SLC9C2	Q5TAH2	1124 aa		10.78	□□□□□ -0.68
CSMD1-208	ENST00000520561	TMED8	Q6PL24	325 aa	Predicted RBP	10.78	□□□□□ -0.68
CSMD1-208	ENST00000520561	KIAA1211	Q6ZU35	1233 aa		10.78	□□□□□ -0.68
CSMD1-208	ENST00000520561	NIM1K	Q8IY84	436 aa		10.78	□□□□□ -0.68
CSMD1-208	ENST00000520561	FAM227B	Q96M60	508 aa		10.78	□□□□□ -0.68
CSMD1-208	ENST00000520561	ANO2	Q9NQ90	1003 aa		10.78	□□□□□ -0.68
CSMD1-208	ENST00000520561	HELLS	Q9NRZ9	838 aa		10.78	□□□□□ -0.68
CSMD1-208	ENST00000520561	ZNF532	Q9HCE3	1301 aa		10.78	□□□□□ -0.68
CSMD1-208	ENST00000520561	GSTO1	P78417	241 aa		10.77	□□□□□ -0.69
CSMD1-208	ENST00000520561	MFSD14B	Q5SR56	506 aa		10.77	□□□□□ -0.69
CSMD1-208	ENST00000520561	NAA16	Q6N069	864 aa	Predicted RBP	10.77	□□□□□ -0.69
CSMD1-208	ENST00000520561	MAGEB6	Q8N7X4	407 aa		10.77	□□□□□ -0.69
CSMD1-208	ENST00000520561	MAST3	O60307	1309 aa		10.77	□□□□□ -0.69
CSMD1-208	ENST00000520561	CCDC171	Q6TFL3	1326 aa		10.77	□□□□□ -0.69
CSMD1-208	ENST00000520561	CCDC88A	Q3V6T2	1871 aa		10.76	□□□□□ -0.69
CSMD1-208	ENST00000520561	SEC24B	O95487	1268 aa		10.76	□□□□□ -0.69
CSMD1-208	ENST00000520561	CYP7A1	P22680	504 aa		10.76	□□□□□ -0.69
CSMD1-208	ENST00000520561	MCC	P23508	829 aa		10.76	□□□□□ -0.69
CSMD1-208	ENST00000520561	PRDX5	P30044	214 aa		10.76	□□□□□ -0.69
CSMD1-208	ENST00000520561	RASSF7	Q02833	373 aa		10.76	□□□□□ -0.69
CSMD1-208	ENST00000520561	STRIP1	Q5VSL9	837 aa		10.76	□□□□□ -0.69
CSMD1-208	ENST00000520561	TTLL5	Q6EMB2	1281 aa		10.76	□□□□□ -0.69
CSMD1-208	ENST00000520561	JDP2	Q8WYK2	163 aa		10.76	□□□□□ -0.69
CSMD1-208	ENST00000520561	SUGT1	Q9Y2Z0	365 aa		10.76	□□□□□ -0.69
CSMD1-208	ENST00000520561	MYO5A	Q9Y4I1	1855 aa	Known RBP	10.76	□□□□□ -0.69
CSMD1-208	ENST00000520561	PSME4	Q14997	1843 aa		10.75	□□□□□ -0.69
CSMD1-208	ENST00000520561	TCRBV5S4A2T	A0A5A2	114 aa		10.75	□□□□□ -0.69
CSMD1-208	ENST00000520561	USP17L3	A6NCW0	530 aa		10.75	□□□□□ -0.69
CSMD1-208	ENST00000520561	USP17L4	A6NCW7	530 aa		10.75	□□□□□ -0.69
CSMD1-208	ENST00000520561	EPB41L2	O43491	1005 aa	Known RBP	10.75	□□□□□ -0.69

Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms