RNA–Protein interactions for RNA: ENST00000515516.1

TCOF1-215, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 5

Gene TCOF1, Length 661 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-215ENST00000515516 F8W031 263 aaPredicted RBP17.13■□□□□ 0.33
TCOF1-215ENST00000515516 MYO1BO43795 1136 aa17.13■□□□□ 0.33
TCOF1-215ENST00000515516 TTLL12Q14166 644 aaPredicted RBP17.13■□□□□ 0.33
TCOF1-215ENST00000515516 ANKRD44Q8N8A2 993 aa17.13■□□□□ 0.33
TCOF1-215ENST00000515516 SCAF8Q9UPN6 1271 aaKnown RBP17.13■□□□□ 0.33
TCOF1-215ENST00000515516 CAVIN4Q5BKX8 364 aa17.12■□□□□ 0.33
TCOF1-215ENST00000515516 JAG2Q9Y219 1238 aa17.12■□□□□ 0.33
TCOF1-215ENST00000515516 FRAT2O75474 233 aaPredicted RBP17.11■□□□□ 0.33
TCOF1-215ENST00000515516 UBTFL1P0CB47 393 aaPredicted RBP17.11■□□□□ 0.33
TCOF1-215ENST00000515516 GYG1P46976 350 aa17.11■□□□□ 0.33
TCOF1-215ENST00000515516 RBM5P52756 815 aaKnown RBP eCLIP17.11■□□□□ 0.33
TCOF1-215ENST00000515516 LRRC24Q50LG9 513 aa17.11■□□□□ 0.33
TCOF1-215ENST00000515516 PRAMEF18Q5VWM3 479 aa17.11■□□□□ 0.33
TCOF1-215ENST00000515516 CERS5Q8N5B7 392 aa17.11■□□□□ 0.33
TCOF1-215ENST00000515516 FAM84BQ96KN1 310 aaPredicted RBP17.11■□□□□ 0.33
TCOF1-215ENST00000515516 FAM155AB1AL88 458 aaPredicted RBP17.1■□□□□ 0.33
TCOF1-215ENST00000515516 KIF23Q02241 960 aaPredicted RBP17.1■□□□□ 0.33
TCOF1-215ENST00000515516 CFAP100Q494V2 611 aa17.1■□□□□ 0.33
TCOF1-215ENST00000515516 MTMR14Q8NCE2 650 aa17.1■□□□□ 0.33
TCOF1-215ENST00000515516 TDRD7Q8NHU6 1098 aaKnown RBP17.1■□□□□ 0.33
TCOF1-215ENST00000515516 TSKSQ9UJT2 592 aa17.1■□□□□ 0.33
TCOF1-215ENST00000515516 UBE2Q2LH0YL09 131 aa17.09■□□□□ 0.33
TCOF1-215ENST00000515516 PDE8BO95263 885 aa17.09■□□□□ 0.33
TCOF1-215ENST00000515516 SLC10A3P09131 477 aa17.09■□□□□ 0.33
TCOF1-215ENST00000515516 RARSP54136 660 aaKnown RBP17.09■□□□□ 0.33
TCOF1-215ENST00000515516 MFSD14BQ5SR56 506 aa17.09■□□□□ 0.33
TCOF1-215ENST00000515516 ARMC9Q7Z3E5 817 aa17.09■□□□□ 0.33
TCOF1-215ENST00000515516 REM2Q8IYK8 340 aaPredicted RBP17.09■□□□□ 0.33
TCOF1-215ENST00000515516 KLHDC4Q8TBB5 520 aa17.09■□□□□ 0.33
TCOF1-215ENST00000515516 ZBED3Q96IU2 234 aaPredicted RBP17.09■□□□□ 0.33
TCOF1-215ENST00000515516 FAM205AQ6ZU69 1335 aa17.09■□□□□ 0.33
TCOF1-215ENST00000515516 KIF16BQ96L93 1317 aa17.08■□□□□ 0.32
TCOF1-215ENST00000515516 IFIT1P09914 478 aaKnown RBP17.08■□□□□ 0.32
TCOF1-215ENST00000515516 DIEXFQ68CQ4 756 aaKnown RBP17.08■□□□□ 0.32
TCOF1-215ENST00000515516 ZIC5Q96T25 663 aa17.08■□□□□ 0.32
TCOF1-215ENST00000515516 THSD7BQ9C0I4 1608 aa17.07■□□□□ 0.32
TCOF1-215ENST00000515516 SPDYE2BA6NHP3 402 aa17.07■□□□□ 0.32
TCOF1-215ENST00000515516 EYA2O00167 538 aa17.07■□□□□ 0.32
TCOF1-215ENST00000515516 IPO8O15397 1037 aaKnown RBP17.07■□□□□ 0.32
TCOF1-215ENST00000515516 SPDYE6P0CI01 402 aa17.07■□□□□ 0.32
TCOF1-215ENST00000515516 PUM3Q15397 648 aaKnown RBP17.07■□□□□ 0.32
TCOF1-215ENST00000515516 MOB2Q70IA6 237 aa17.07■□□□□ 0.32
TCOF1-215ENST00000515516 FBXO33Q7Z6M2 555 aa17.07■□□□□ 0.32
TCOF1-215ENST00000515516 RASAL3Q86YV0 1011 aa17.07■□□□□ 0.32
TCOF1-215ENST00000515516 ARHGAP45Q92619 1136 aa17.07■□□□□ 0.32
TCOF1-215ENST00000515516 DEFB129Q9H1M3 183 aa17.07■□□□□ 0.32
TCOF1-215ENST00000515516 VEZTQ9HBM0 779 aa17.07■□□□□ 0.32
TCOF1-215ENST00000515516 TTF2Q9UNY4 1162 aaKnown RBP17.07■□□□□ 0.32
TCOF1-215ENST00000515516 PPP2R3BQ9Y5P8 575 aa17.07■□□□□ 0.32
TCOF1-215ENST00000515516 PSME4Q14997 1843 aa17.07■□□□□ 0.32
TCOF1-215ENST00000515516 CLRN2A0PK11 232 aa17.06■□□□□ 0.32
TCOF1-215ENST00000515516 CHAF1AQ13111 956 aaPredicted RBP17.06■□□□□ 0.32
TCOF1-215ENST00000515516 PRKG1Q13976 671 aa17.06■□□□□ 0.32
TCOF1-215ENST00000515516 TBC1D22AQ8WUA7 517 aa17.06■□□□□ 0.32
TCOF1-215ENST00000515516 PRMT6Q96LA8 375 aaPredicted RBP17.06■□□□□ 0.32
TCOF1-215ENST00000515516 SAGE1Q9NXZ1 904 aa17.06■□□□□ 0.32
TCOF1-215ENST00000515516 SLC5A1P13866 664 aa17.05■□□□□ 0.32
TCOF1-215ENST00000515516 SUPT20HL1Q3ZLR7 823 aa17.05■□□□□ 0.32
TCOF1-215ENST00000515516 MIER1Q8N108 512 aa17.05■□□□□ 0.32
TCOF1-215ENST00000515516 VGLL2Q8N8G2 317 aa17.05■□□□□ 0.32
TCOF1-215ENST00000515516 SERPINA10Q9UK55 444 aa17.05■□□□□ 0.32
TCOF1-215ENST00000515516 IQSEC3Q9UPP2 1182 aaPredicted RBP17.05■□□□□ 0.32
TCOF1-215ENST00000515516 PPP1R12BO60237 982 aaPredicted RBP17.04■□□□□ 0.32
TCOF1-215ENST00000515516 RFX5P48382 616 aaPredicted RBP17.04■□□□□ 0.32
TCOF1-215ENST00000515516 BCAMP50895 628 aa17.04■□□□□ 0.32
TCOF1-215ENST00000515516 PTPN12Q05209 780 aaKnown RBP17.04■□□□□ 0.32
TCOF1-215ENST00000515516 LPIN2Q92539 896 aa17.04■□□□□ 0.32
TCOF1-215ENST00000515516 CSRNP1Q96S65 589 aa17.04■□□□□ 0.32
TCOF1-215ENST00000515516 FBXO3Q9UK99 471 aa17.04■□□□□ 0.32
TCOF1-215ENST00000515516 ANGEL1Q9UNK9 670 aaKnown RBP17.04■□□□□ 0.32
TCOF1-215ENST00000515516 PCDHAC2Q9Y5I4 1007 aa17.04■□□□□ 0.32
TCOF1-215ENST00000515516 LRRFIP2Q9Y608 721 aaKnown RBP17.04■□□□□ 0.32
TCOF1-215ENST00000515516 COL1A1P02452 1464 aaPredicted RBP17.04■□□□□ 0.32
TCOF1-215ENST00000515516 TRPA1O75762 1119 aa17.03■□□□□ 0.32
TCOF1-215ENST00000515516 GNAI3P08754 354 aa17.03■□□□□ 0.32
TCOF1-215ENST00000515516 HNRNPUQ00839 825 aaKnown RBP eCLIP17.03■□□□□ 0.32
TCOF1-215ENST00000515516 TNFAIP1Q13829 316 aa17.03■□□□□ 0.32
TCOF1-215ENST00000515516 FRAT1Q92837 279 aaPredicted RBP17.03■□□□□ 0.32
TCOF1-215ENST00000515516 SIL1Q9H173 461 aa17.03■□□□□ 0.32
TCOF1-215ENST00000515516 RNF186Q9NXI6 227 aa17.03■□□□□ 0.32
TCOF1-215ENST00000515516 CEP126Q9P2H0 1117 aa17.03■□□□□ 0.32
TCOF1-215ENST00000515516 PAPPA2Q9BXP8 1791 aa17.02■□□□□ 0.32
TCOF1-215ENST00000515516 CIAO1O76071 339 aa17.02■□□□□ 0.32
TCOF1-215ENST00000515516 CRKP46108 304 aa17.02■□□□□ 0.32
TCOF1-215ENST00000515516 INTS3Q68E01 1043 aaKnown RBP17.02■□□□□ 0.32
TCOF1-215ENST00000515516 FGFR2P21802 821 aa17.01■□□□□ 0.31
TCOF1-215ENST00000515516 IL15P40933 162 aaPredicted RBP17.01■□□□□ 0.31
TCOF1-215ENST00000515516 TNNI2P48788 182 aa17.01■□□□□ 0.31
TCOF1-215ENST00000515516 RASA3Q14644 834 aa17.01■□□□□ 0.31
TCOF1-215ENST00000515516 DZIP1LQ8IYY4 767 aaKnown RBP17.01■□□□□ 0.31
TCOF1-215ENST00000515516 SLC10A4Q96EP9 437 aa17.01■□□□□ 0.31
TCOF1-215ENST00000515516 ABHD8Q96I13 439 aa17.01■□□□□ 0.31
TCOF1-215ENST00000515516 MEIS3Q99687 375 aa17.01■□□□□ 0.31
TCOF1-215ENST00000515516 GNL3LQ9NVN8 582 aaKnown RBP17.01■□□□□ 0.31
TCOF1-215ENST00000515516 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.01■□□□□ 0.31
TCOF1-215ENST00000515516 ZNF70Q9UC06 446 aaPredicted RBP17.01■□□□□ 0.31
TCOF1-215ENST00000515516 POLR2AP24928 1970 aaKnown RBP17■□□□□ 0.31
TCOF1-215ENST00000515516 HDLBPQ00341 1268 aaKnown RBP17■□□□□ 0.31
TCOF1-215ENST00000515516 MKRN3Q13064 507 aaKnown RBP17■□□□□ 0.31
TCOF1-215ENST00000515516 ATP2B3Q16720 1220 aa17■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms