RNA–Protein interactions for RNA: ENST00000515460.5

NUP54-218, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 849 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-218ENST00000515460 ZBTB39O15060 712 aa8.38□□□□□ -1.07
NUP54-218ENST00000515460 SCNN1AP37088 669 aa8.38□□□□□ -1.07
NUP54-218ENST00000515460 C1QTNF8P60827 252 aa8.38□□□□□ -1.07
NUP54-218ENST00000515460 TTC39BQ5VTQ0 682 aaPredicted RBP8.38□□□□□ -1.07
NUP54-218ENST00000515460 MRPL18Q9H0U6 180 aaKnown RBP8.38□□□□□ -1.07
NUP54-218ENST00000515460 FAM13BQ9NYF5 915 aa8.38□□□□□ -1.07
NUP54-218ENST00000515460 CPS1P31327 1500 aa8.38□□□□□ -1.07
NUP54-218ENST00000515460 SHANK2Q9UPX8 1470 aa8.38□□□□□ -1.07
NUP54-218ENST00000515460 RAPGEF2Q9Y4G8 1499 aa8.38□□□□□ -1.07
NUP54-218ENST00000515460 LRP5O75197 1615 aa8.37□□□□□ -1.07
NUP54-218ENST00000515460 IQGAP2Q13576 1575 aa8.37□□□□□ -1.07
NUP54-218ENST00000515460 HOXD8P13378 290 aaPredicted RBP8.37□□□□□ -1.07
NUP54-218ENST00000515460 CDC25BP30305 580 aa8.37□□□□□ -1.07
NUP54-218ENST00000515460 ATP11AP98196 1134 aa8.37□□□□□ -1.07
NUP54-218ENST00000515460 SETDB1Q15047 1291 aa8.37□□□□□ -1.07
NUP54-218ENST00000515460 CEP135Q66GS9 1140 aa8.37□□□□□ -1.07
NUP54-218ENST00000515460 OR13H1Q8NG92 308 aa8.37□□□□□ -1.07
NUP54-218ENST00000515460 SPACA7Q96KW9 195 aa8.37□□□□□ -1.07
NUP54-218ENST00000515460 LACRTQ9GZZ8 138 aa8.37□□□□□ -1.07
NUP54-218ENST00000515460 STIM2Q9P246 746 aa8.37□□□□□ -1.07
NUP54-218ENST00000515460 FNDC3AQ9Y2H6 1198 aaKnown RBP8.37□□□□□ -1.07
NUP54-218ENST00000515460 PPME1Q9Y570 386 aa8.37□□□□□ -1.07
NUP54-218ENST00000515460 PHLDB1Q86UU1 1377 aa8.36□□□□□ -1.07
NUP54-218ENST00000515460 LINC01387J3KSC0 135 aa8.36□□□□□ -1.07
NUP54-218ENST00000515460 HYAL3O43820 417 aaPredicted RBP8.36□□□□□ -1.07
NUP54-218ENST00000515460 HYAL2Q12891 473 aa8.36□□□□□ -1.07
NUP54-218ENST00000515460 TXNDC11Q6PKC3 985 aa8.36□□□□□ -1.07
NUP54-218ENST00000515460 AGGF1Q8N302 714 aaeCLIP8.36□□□□□ -1.07
NUP54-218ENST00000515460 PSMG3-AS1Q96PY0 264 aa8.36□□□□□ -1.07
NUP54-218ENST00000515460 BCL11AQ9H165 835 aa8.36□□□□□ -1.07
NUP54-218ENST00000515460 C3P01024 1663 aa8.36□□□□□ -1.07
NUP54-218ENST00000515460 RAPGEF6Q8TEU7 1601 aa8.36□□□□□ -1.07
NUP54-218ENST00000515460 UGGT2Q9NYU1 1516 aa8.35□□□□□ -1.07
NUP54-218ENST00000515460 F8W735 103 aaPredicted RBP8.35□□□□□ -1.07
NUP54-218ENST00000515460 ATP2B4P23634 1241 aa8.35□□□□□ -1.07
NUP54-218ENST00000515460 LRP8Q14114 963 aa8.35□□□□□ -1.07
NUP54-218ENST00000515460 PRR23CQ6ZRP0 262 aa8.35□□□□□ -1.07
NUP54-218ENST00000515460 TMEM130Q8N3G9 435 aa8.35□□□□□ -1.07
NUP54-218ENST00000515460 KRTAP4-8Q9BYQ9 185 aa8.35□□□□□ -1.07
NUP54-218ENST00000515460 TRAPPC8Q9Y2L5 1435 aa8.35□□□□□ -1.07
NUP54-218ENST00000515460 GLB1P16278 677 aa8.34□□□□□ -1.07
NUP54-218ENST00000515460 ZNF772Q68DY9 489 aaPredicted RBP8.34□□□□□ -1.07
NUP54-218ENST00000515460 MAP4K3Q8IVH8 894 aa8.34□□□□□ -1.07
NUP54-218ENST00000515460 DZIP1LQ8IYY4 767 aaKnown RBP8.34□□□□□ -1.07
NUP54-218ENST00000515460 SRA1Q9HD15 236 aaKnown RBP8.34□□□□□ -1.07
NUP54-218ENST00000515460 SLAIN2Q9P270 581 aa8.34□□□□□ -1.07
NUP54-218ENST00000515460 SEPT3Q9UH03 358 aa8.34□□□□□ -1.07
NUP54-218ENST00000515460 ZFYVE16Q7Z3T8 1539 aa8.34□□□□□ -1.08
NUP54-218ENST00000515460 SMNDC1O75940 238 aaKnown RBP eCLIP8.33□□□□□ -1.08
NUP54-218ENST00000515460 CYP2E1P05181 493 aaPredicted RBP8.33□□□□□ -1.08
NUP54-218ENST00000515460 RICTORQ6R327 1708 aa8.33□□□□□ -1.08
NUP54-218ENST00000515460 ATCAYQ86WG3 371 aa8.33□□□□□ -1.08
NUP54-218ENST00000515460 ABTB2Q8N961 1025 aa8.33□□□□□ -1.08
NUP54-218ENST00000515460 GALNT11Q8NCW6 608 aa8.33□□□□□ -1.08
NUP54-218ENST00000515460 MUC3BQ9H195 1237 aa8.33□□□□□ -1.08
NUP54-218ENST00000515460 RASSF4Q9H2L5 321 aa8.33□□□□□ -1.08
NUP54-218ENST00000515460 ABI2Q9NYB9 513 aaPredicted RBP8.33□□□□□ -1.08
NUP54-218ENST00000515460 TCOF1Q13428 1488 aaKnown RBP8.32□□□□□ -1.08
NUP54-218ENST00000515460 NCAPG2Q86XI2 1143 aa8.32□□□□□ -1.08
NUP54-218ENST00000515460 CACTIN-AS1Q8N1I8 211 aa8.32□□□□□ -1.08
NUP54-218ENST00000515460 DCAF11Q8TEB1 546 aa8.32□□□□□ -1.08
NUP54-218ENST00000515460 C1orf115Q9H7X2 142 aa8.32□□□□□ -1.08
NUP54-218ENST00000515460 NEO1Q92859 1461 aa8.32□□□□□ -1.08
NUP54-218ENST00000515460 RGS12O14924 1447 aa8.31□□□□□ -1.08
NUP54-218ENST00000515460 CDC27P30260 824 aa8.31□□□□□ -1.08
NUP54-218ENST00000515460 ADAMTSL4Q6UY14 1074 aa8.31□□□□□ -1.08
NUP54-218ENST00000515460 NUDT16Q96DE0 195 aaKnown RBP8.31□□□□□ -1.08
NUP54-218ENST00000515460 CARD10Q9BWT7 1032 aa8.31□□□□□ -1.08
NUP54-218ENST00000515460 SH2B1Q9NRF2 756 aaPredicted RBP8.31□□□□□ -1.08
NUP54-218ENST00000515460 DENND4BO75064 1496 aaPredicted RBP8.31□□□□□ -1.08
NUP54-218ENST00000515460 EP400Q96L91 3159 aa8.3□□□□□ -1.08
NUP54-218ENST00000515460 FSTP19883 344 aa8.3□□□□□ -1.08
NUP54-218ENST00000515460 CD68P34810 354 aaPredicted RBP8.3□□□□□ -1.08
NUP54-218ENST00000515460 MEX3CQ5U5Q3 659 aaKnown RBP8.3□□□□□ -1.08
NUP54-218ENST00000515460 ELP3Q9H9T3 547 aa8.3□□□□□ -1.08
NUP54-218ENST00000515460 TMEM63CQ9P1W3 806 aa8.3□□□□□ -1.08
NUP54-218ENST00000515460 RNF112Q9ULX5 631 aa8.3□□□□□ -1.08
NUP54-218ENST00000515460 WISP1O95388 367 aa8.29□□□□□ -1.08
NUP54-218ENST00000515460 ACAD11Q709F0 780 aa8.29□□□□□ -1.08
NUP54-218ENST00000515460 ZNF438Q7Z4V0 828 aa8.29□□□□□ -1.08
NUP54-218ENST00000515460 PBX4Q9BYU1 374 aa8.29□□□□□ -1.08
NUP54-218ENST00000515460 KCNK4Q9NYG8 393 aa8.29□□□□□ -1.08
NUP54-218ENST00000515460 KANSL3Q9P2N6 904 aa8.29□□□□□ -1.08
NUP54-218ENST00000515460 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP8.29□□□□□ -1.08
NUP54-218ENST00000515460 LRP6O75581 1613 aa8.29□□□□□ -1.08
NUP54-218ENST00000515460 FHOD3Q2V2M9 1422 aa8.29□□□□□ -1.08
NUP54-218ENST00000515460 PRXQ9BXM0 1461 aa8.28□□□□□ -1.08
NUP54-218ENST00000515460 CDK12Q9NYV4 1490 aaPredicted RBP8.28□□□□□ -1.08
NUP54-218ENST00000515460 ZC3HAV1Q7Z2W4 902 aaKnown RBP8.28□□□□□ -1.08
NUP54-218ENST00000515460 CEP120Q8N960 986 aa8.28□□□□□ -1.08
NUP54-218ENST00000515460 UBL7Q96S82 380 aaPredicted RBP8.28□□□□□ -1.08
NUP54-218ENST00000515460 CNTN3Q9P232 1028 aa8.28□□□□□ -1.08
NUP54-218ENST00000515460 FAM177BA6PVY3 158 aa8.27□□□□□ -1.09
NUP54-218ENST00000515460 FSCN2O14926 492 aa8.27□□□□□ -1.09
NUP54-218ENST00000515460 DDX3YO15523 660 aaKnown RBP8.27□□□□□ -1.09
NUP54-218ENST00000515460 KIF4AO95239 1232 aa8.27□□□□□ -1.09
NUP54-218ENST00000515460 DNM1Q05193 864 aaKnown RBP8.27□□□□□ -1.09
NUP54-218ENST00000515460 PDE12Q6L8Q7 609 aaKnown RBP8.27□□□□□ -1.09
NUP54-218ENST00000515460 FAM117BQ6P1L5 589 aa8.27□□□□□ -1.09
NUP54-218ENST00000515460 EDEM1Q92611 657 aa8.27□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 391 ms